ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags27n02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DQ201168.1| Hordeum vulgare subsp. vulgare cultivar Morex MADS box protein VRT-2 mRNA, complete cds Length = 1042 Score = 745 bits (376), Expect = 0.0 Identities = 397/402 (98%), Gaps = 2/402 (0%) Strand = Plus / Minus Query: 1 gcatgagca-cggtgcccatacgcttcacn-taaaataatacacatagccgcggcaggtg 58 ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 1017 gcatgagcaacggtgcccatacgcttcaccataaaataatacacatagccgcggcaggtg 958 Query: 59 catacatggtttgcacgaatgatacatgtcgctaagagagcaagaggatacgctacaagt 118 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 957 catacatggtttgcacgaatgatacatgtcgctaagagagcaagaggatacgctacaagt 898 Query: 119 acagttactgaatacccaggcaaaggtggacaactgcgccgtgcgcattgcagacataaa 178 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 897 acagttactgaatacccaggcaaaggtggacaactgcgccgtgcgcattgcagacataaa 838 Query: 179 acaacgacaatttgatcgggttaaactgatctggcttctactataggatcattccagtca 238 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 837 acaacgacaatttgatcgggttaaactgatctggcttctactataggatcattccagtca 778 Query: 239 gcctatcttggagtgagtctncatagcattggacatcttctctctactaaggaactccct 298 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 777 gcctatcttggagtgagtctccatagcattggacatcttctctctactaaggaactccct 718 Query: 299 catggactcatagtggtctgtctccccgcggaccttacttccaaggtaacgctagtttaa 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 717 catggactcatagtggtctgtctccccgcggaccttacttccaaggtaacgctagtttaa 658 Query: 359 gggatatatcagaaccgtcgtcattgttctgcgagcttgccg 400 ||||||||||||||||||||||||||| |||||||||||||| Sbjct: 657 gggatatatcagaaccgtcgtcattgtcctgcgagcttgccg 616
>gb|DQ201167.1| Hordeum vulgare subsp. vulgare cultivar Dicktoo MADS box protein VRT-2, precursor RNA, partial cds Length = 970 Score = 745 bits (376), Expect = 0.0 Identities = 397/402 (98%), Gaps = 2/402 (0%) Strand = Plus / Minus Query: 1 gcatgagca-cggtgcccatacgcttcacn-taaaataatacacatagccgcggcaggtg 58 ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 931 gcatgagcaacggtgcccatacgcttcaccataaaataatacacatagccgcggcaggtg 872 Query: 59 catacatggtttgcacgaatgatacatgtcgctaagagagcaagaggatacgctacaagt 118 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 871 catacatggtttgcacgaatgatacatgtcgctaagagagcaagaggatacgctacaagt 812 Query: 119 acagttactgaatacccaggcaaaggtggacaactgcgccgtgcgcattgcagacataaa 178 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 811 acagttactgaatacccaggcaaaggtggacaactgcgccgtgcgcattgcagacataaa 752 Query: 179 acaacgacaatttgatcgggttaaactgatctggcttctactataggatcattccagtca 238 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 751 acaacgacaatttgatcgggttaaactgatctggcttctactataggatcattccagtca 692 Query: 239 gcctatcttggagtgagtctncatagcattggacatcttctctctactaaggaactccct 298 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 691 gcctatcttggagtgagtctccatagcattggacatcttctctctactaaggaactccct 632 Query: 299 catggactcatagtggtctgtctccccgcggaccttacttccaaggtaacgctagtttaa 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 631 catggactcatagtggtctgtctccccgcggaccttacttccaaggtaacgctagtttaa 572 Query: 359 gggatatatcagaaccgtcgtcattgttctgcgagcttgccg 400 ||||||||||||||||||||||||||| |||||||||||||| Sbjct: 571 gggatatatcagaaccgtcgtcattgtcctgcgagcttgccg 530
>gb|DQ201166.1| Hordeum vulgare subsp. vulgare cultivar Dicktoo MADS box protein VRT-2 mRNA, complete cds Length = 1047 Score = 745 bits (376), Expect = 0.0 Identities = 397/402 (98%), Gaps = 2/402 (0%) Strand = Plus / Minus Query: 1 gcatgagca-cggtgcccatacgcttcacn-taaaataatacacatagccgcggcaggtg 58 ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 1008 gcatgagcaacggtgcccatacgcttcaccataaaataatacacatagccgcggcaggtg 949 Query: 59 catacatggtttgcacgaatgatacatgtcgctaagagagcaagaggatacgctacaagt 118 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 948 catacatggtttgcacgaatgatacatgtcgctaagagagcaagaggatacgctacaagt 889 Query: 119 acagttactgaatacccaggcaaaggtggacaactgcgccgtgcgcattgcagacataaa 178 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 888 acagttactgaatacccaggcaaaggtggacaactgcgccgtgcgcattgcagacataaa 829 Query: 179 acaacgacaatttgatcgggttaaactgatctggcttctactataggatcattccagtca 238 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 828 acaacgacaatttgatcgggttaaactgatctggcttctactataggatcattccagtca 769 Query: 239 gcctatcttggagtgagtctncatagcattggacatcttctctctactaaggaactccct 298 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 768 gcctatcttggagtgagtctccatagcattggacatcttctctctactaaggaactccct 709 Query: 299 catggactcatagtggtctgtctccccgcggaccttacttccaaggtaacgctagtttaa 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 708 catggactcatagtggtctgtctccccgcggaccttacttccaaggtaacgctagtttaa 649 Query: 359 gggatatatcagaaccgtcgtcattgttctgcgagcttgccg 400 ||||||||||||||||||||||||||| |||||||||||||| Sbjct: 648 gggatatatcagaaccgtcgtcattgtcctgcgagcttgccg 607
>gb|DQ022679.1| Triticum aestivum MADS box protein VRT-2 mRNA, complete cds Length = 1068 Score = 141 bits (71), Expect = 2e-30 Identities = 100/110 (90%) Strand = Plus / Minus Query: 181 aacgacaatttgatcgggttaaactgatctggcttctactataggatcattccagtcagc 240 |||||||| | |||| |||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 920 aacgacaactcgatcaggttaaactgatctggcttctactatgggatcattccagtcagc 861 Query: 241 ctatcttggagtgagtctncatagcattggacatcttctctctactaagg 290 ||||||| |||||| ||| ||||||||| ||||||||||||||| |||| Sbjct: 860 ctatcttcgagtgattctccatagcatttcacatcttctctctaccaagg 811 Score = 117 bits (59), Expect = 3e-23 Identities = 74/79 (93%) Strand = Plus / Minus Query: 318 gtctccccgcggaccttacttccaaggtaacgctagtttaagggatatatcagaaccgtc 377 |||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 798 gtctccccacggtccttacttccaaggtaacgctagtttcagggatatatcagaaccgtc 739 Query: 378 gtcattgttctgcgagctt 396 ||||||| |||||||||| Sbjct: 738 atcattgtcctgcgagctt 720
>gb|DQ110011.1| Lolium perenne MADS16 mRNA, complete cds Length = 1121 Score = 99.6 bits (50), Expect = 7e-18 Identities = 62/66 (93%) Strand = Plus / Minus Query: 331 ccttacttccaaggtaacgctagtttaagggatatatcagaaccgtcgtcattgttctgc 390 |||||||||||||| ||||||||||| || ||||||||||||||||||||||||| |||| Sbjct: 760 ccttacttccaaggcaacgctagtttcagcgatatatcagaaccgtcgtcattgtcctgc 701 Query: 391 gagctt 396 |||||| Sbjct: 700 gagctt 695 Score = 44.1 bits (22), Expect = 0.34 Identities = 43/50 (86%) Strand = Plus / Minus Query: 200 taaactgatctggcttctactataggatcattccagtcagcctatcttgg 249 |||| |||||||| ||||| ||| ||| |||||||||||| ||| ||||| Sbjct: 884 taaattgatctggtttctaatatgggaccattccagtcagtctagcttgg 835
>gb|AY345223.2| Oryza sativa (japonica cultivar-group) transcription factor MADS55 mRNA, complete cds Length = 738 Score = 58.0 bits (29), Expect = 2e-05 Identities = 50/57 (87%) Strand = Plus / Minus Query: 340 caaggtaacgctagtttaagggatatatcagaaccgtcgtcattgttctgcgagctt 396 ||||| ||| ||||||| ||||||||||||||||| || ||||| | |||||||||| Sbjct: 737 caaggcaaccctagtttcagggatatatcagaaccatcatcattatcctgcgagctt 681
>dbj|AK111859.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024G19, full insert sequence Length = 1218 Score = 58.0 bits (29), Expect = 2e-05 Identities = 50/57 (87%) Strand = Plus / Minus Query: 340 caaggtaacgctagtttaagggatatatcagaaccgtcgtcattgttctgcgagctt 396 ||||| ||| ||||||| ||||||||||||||||| || ||||| | |||||||||| Sbjct: 796 caaggcaaccctagtttcagggatatatcagaaccatcatcattatcctgcgagctt 740
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 350 ctagtttaagggatatatcagaaccgtcgtcattgttctgcgagctt 396 ||||||| ||||||||||||||||| || ||||| | |||||||||| Sbjct: 5964415 ctagtttcagggatatatcagaaccatcatcattatcctgcgagctt 5964461
>dbj|AP004741.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0024N18 Length = 128739 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 350 ctagtttaagggatatatcagaaccgtcgtcattgttctgcgagctt 396 ||||||| ||||||||||||||||| || ||||| | |||||||||| Sbjct: 86067 ctagtttcagggatatatcagaaccatcatcattatcctgcgagctt 86113
>emb|CT573502.2| Medicago truncatula chromosome 5 clone mte1-69f21, COMPLETE SEQUENCE Length = 89977 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 111 ctacaagtacagttactgaat 131 ||||||||||||||||||||| Sbjct: 38776 ctacaagtacagttactgaat 38756
>ref|XM_426415.1| PREDICTED: Gallus gallus similar to SH3 and multiple ankyrin repeat domains 2 isoform 1; cortactin SH3 domain-binding protein; cortactin binding protein 1; GKAP/SAPAP interacting protein (LOC428858), mRNA Length = 10242 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 ggtgcatacatggtttgcac 74 |||||||||||||||||||| Sbjct: 6327 ggtgcatacatggtttgcac 6346
>emb|CR450724.10| Zebrafish DNA sequence from clone DKEY-168I4 in linkage group 18, complete sequence Length = 197565 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 ataaaacaacgacaatttga 193 |||||||||||||||||||| Sbjct: 169922 ataaaacaacgacaatttga 169903
>gb|AC087867.5| Genomic sequence for Mus musculus, clone RP23-183P4, complete sequence Length = 217281 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 cagttactgaatacccaggc 139 |||||||||||||||||||| Sbjct: 111746 cagttactgaatacccaggc 111727
>emb|AL589692.10| Mouse DNA sequence from clone RP23-385C21 on chromosome 15, complete sequence Length = 180223 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 cagttactgaatacccaggc 139 |||||||||||||||||||| Sbjct: 33475 cagttactgaatacccaggc 33456
>emb|AL583893.17| Mouse DNA sequence from clone RP23-189A18 on chromosome 15, complete sequence Length = 184558 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 cagttactgaatacccaggc 139 |||||||||||||||||||| Sbjct: 53521 cagttactgaatacccaggc 53540
>gb|M94148.1|MUSAIC2A13 Mus musculus IL-3 receptor B subunit (AIC2A) gene, exon 14 and 3' end Length = 3774 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 cagttactgaatacccaggc 139 |||||||||||||||||||| Sbjct: 2970 cagttactgaatacccaggc 2951 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,398,271 Number of Sequences: 3902068 Number of extensions: 2398271 Number of successful extensions: 36748 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 36718 Number of HSP's gapped (non-prelim): 27 length of query: 400 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 378 effective length of database: 17,147,199,772 effective search space: 6481641513816 effective search space used: 6481641513816 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
