ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags27m23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_450515.1| Oryza sativa (japonica cultivar-group), mRNA 52 0.001
2dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
3dbj|AP005879.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
4dbj|AK071737.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
5emb|BX511019.6| Zebrafish DNA sequence from clone CH211-89O9 in ... 46 0.058
6gb|AY112206.1| Zea mays CL9766_1 mRNA sequence 44 0.23
7gb|AC112153.4| Mus musculus BAC clone RP24-93G11 from chromosome... 42 0.90
8gb|AC087710.8| Homo sapiens chromosome 8, clone RP11-11A18, comp... 42 0.90
9gb|AC024996.6| Homo sapiens chromosome 8, clone RP11-697C18, com... 42 0.90
10gb|AC156505.6| Mus musculus 10 BAC RP24-270N22 (Roswell Park Can... 42 0.90
11ref|NM_100320.2| Arabidopsis thaliana CRY2 (CRYPTOCHROME 2) AT1G... 40 3.6
12gb|AY576271.1| Arabidopsis thaliana strain CS6669 cryptochrome 2... 40 3.6
13gb|AY576270.1| Arabidopsis thaliana strain CS6042 cryptochrome 2... 40 3.6
14gb|AY576269.1| Arabidopsis thaliana strain CS6180 cryptochrome 2... 40 3.6
15gb|AY576268.1| Arabidopsis thaliana strain CS6175 cryptochrome 2... 40 3.6
16gb|AY576267.1| Arabidopsis thaliana strain CS1074 cryptochrome 2... 40 3.6
17gb|AY576266.1| Arabidopsis thaliana strain CS902 cryptochrome 2 ... 40 3.6
18gb|AY576265.1| Arabidopsis thaliana strain CS6694 cryptochrome 2... 40 3.6
19gb|AY576264.1| Arabidopsis thaliana strain CS6739 cryptochrome 2... 40 3.6
20gb|AY576263.1| Arabidopsis thaliana strain CS6788 cryptochrome 2... 40 3.6
21gb|AY576262.1| Arabidopsis thaliana strain CS6622 cryptochrome 2... 40 3.6
22gb|AY576261.1| Arabidopsis thaliana strain CS6764 cryptochrome 2... 40 3.6
23gb|AY576260.1| Arabidopsis thaliana strain CS1008 cryptochrome 2... 40 3.6
24gb|AY576259.1| Arabidopsis thaliana strain CS6098 cryptochrome 2... 40 3.6
25gb|AY576258.1| Arabidopsis thaliana strain CS6092 cryptochrome 2... 40 3.6
26gb|AY576257.1| Arabidopsis thaliana strain CS6630 cryptochrome 2... 40 3.6
27gb|AY576256.1| Arabidopsis thaliana strain CS6823 cryptochrome 2... 40 3.6
28gb|AY576255.1| Arabidopsis thaliana strain CS6703 cryptochrome 2... 40 3.6
29gb|AY576254.1| Arabidopsis thaliana strain CS6780 cryptochrome 2... 40 3.6
30gb|AY576253.1| Arabidopsis thaliana strain CS6865 cryptochrome 2... 40 3.6
31gb|AY576252.1| Arabidopsis thaliana strain CS6796 cryptochrome 2... 40 3.6
32gb|AY576251.1| Arabidopsis thaliana strain CS6770 cryptochrome 2... 40 3.6
33gb|AY576250.1| Arabidopsis thaliana strain CS6632 cryptochrome 2... 40 3.6
34gb|AY576249.1| Arabidopsis thaliana strain CS910 cryptochrome 2 ... 40 3.6
35gb|AY576248.1| Arabidopsis thaliana strain CS20 cryptochrome 2 (... 40 3.6
36gb|AY576247.1| Arabidopsis thaliana strain CS917 cryptochrome 2 ... 40 3.6
37gb|AY576246.1| Arabidopsis thaliana strain CS6867 cryptochrome 2... 40 3.6
38gb|AY576245.1| Arabidopsis thaliana strain CS6799 cryptochrome 2... 40 3.6
39gb|AY576244.1| Arabidopsis thaliana strain CS6924 cryptochrome 2... 40 3.6
40gb|AY576243.1| Arabidopsis thaliana strain CS6800 cryptochrome 2... 40 3.6
41gb|AY576242.1| Arabidopsis thaliana strain CS1202 cryptochrome 2... 40 3.6
42gb|AY576241.1| Arabidopsis thaliana strain CS1316 cryptochrome 2... 40 3.6
43gb|AC166104.4| Mus musculus BAC clone RP23-320G7 from chromosome... 40 3.6
44gb|AC100052.10| Mus musculus chromosome 8, clone RP23-32L24, com... 40 3.6
45gb|AC122833.2| Mus musculus BAC clone RP23-181J12 from 15, compl... 40 3.6
46gb|AC010196.5| Homo sapiens 12 BAC RP11-202H2 (Roswell Park Canc... 40 3.6
47emb|X99061.1|ATPHH1 A.thaliana PHH1 gene 40 3.6
48gb|AY057442.1| Arabidopsis thaliana ecotype Ler cryptochrome 2 (... 40 3.6
49gb|AY057441.1| Arabidopsis thaliana ecotype Cvi cryptochrome 2 (... 40 3.6
50gb|AC023114.5| Homo sapiens BAC clone RP11-266O8 from 15, comple... 40 3.6
51gb|U62549.1|ATU62549 Arabidopsis thaliana blue light photorecept... 40 3.6
52gb|AC022166.7| Homo sapiens chromosome 16 clone RP11-525K10, com... 40 3.6
53gb|AC108483.3| Homo sapiens chromosome 16 clone RP11-170P24, com... 40 3.6
54dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete ge... 40 3.6
55emb|CT009709.22| Mouse DNA sequence from clone RP23-113L3 on chr... 40 3.6
56gb|AC000104.1|F19P19 Sequence of BAC F19P19 from Arabidopsis tha... 40 3.6
57emb|AL807238.5| Mouse DNA sequence from clone RP23-476F6 on chro... 40 3.6 
>ref|XM_450515.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1103

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                           
Query: 204 ctactgtatctggnaatgcactgtgtggttnttccatataccactctc 251
           ||||| ||||||| ||||||| ||||| |  |||||||||||||||||
Sbjct: 862 ctactctatctggtaatgcaccgtgtgatccttccatataccactctc 815
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                               
Query: 204     ctactgtatctggnaatgcactgtgtggttnttccatataccactctc 251
               ||||| ||||||| ||||||| ||||| |  |||||||||||||||||
Sbjct: 9423874 ctactctatctggtaatgcaccgtgtgatccttccatataccactctc 9423921
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>dbj|AP005879.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBb0024J13
          Length = 127614

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                              
Query: 204    ctactgtatctggnaatgcactgtgtggttnttccatataccactctc 251
              ||||| ||||||| ||||||| ||||| |  |||||||||||||||||
Sbjct: 107288 ctactctatctggtaatgcaccgtgtgatccttccatataccactctc 107335
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>dbj|AK071737.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023109A10, full
           insert sequence
          Length = 1103

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                           
Query: 204 ctactgtatctggnaatgcactgtgtggttnttccatataccactctc 251
           ||||| ||||||| ||||||| ||||| |  |||||||||||||||||
Sbjct: 862 ctactctatctggtaatgcaccgtgtgatccttccatataccactctc 815
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>emb|BX511019.6| Zebrafish DNA sequence from clone CH211-89O9 in linkage group 1,
             complete sequence
          Length = 180744

 Score = 46.1 bits (23), Expect = 0.058
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 158   cattctttcttcctattttgggc 180
             |||||||||||||||||||||||
Sbjct: 73812 cattctttcttcctattttgggc 73790
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>gb|AY112206.1| Zea mays CL9766_1 mRNA sequence
          Length = 674

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                           
Query: 204 ctactgtatctggnaatgcactgtgtggttnttccatataccactctc 251
           ||||| ||||||| ||  ||||||||| |  |||||||||||||||||
Sbjct: 184 ctactctatctggtaactcactgtgtgatccttccatataccactctc 231
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>gb|AC112153.4| Mus musculus BAC clone RP24-93G11 from chromosome 19, complete sequence
          Length = 180944

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 156    ttcattctttcttcctatttt 176
              |||||||||||||||||||||
Sbjct: 100236 ttcattctttcttcctatttt 100216
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>gb|AC087710.8| Homo sapiens chromosome 8, clone RP11-11A18, complete sequence
          Length = 167139

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 155   attcattctttcttcctattt 175
             |||||||||||||||||||||
Sbjct: 31996 attcattctttcttcctattt 31976
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>gb|AC024996.6| Homo sapiens chromosome 8, clone RP11-697C18, complete sequence
          Length = 177864

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 155   attcattctttcttcctattt 175
             |||||||||||||||||||||
Sbjct: 48966 attcattctttcttcctattt 48986
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>gb|AC156505.6| Mus musculus 10 BAC RP24-270N22 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 190789

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 156   ttcattctttcttcctatttt 176
             |||||||||||||||||||||
Sbjct: 59443 ttcattctttcttcctatttt 59423
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>ref|NM_100320.2| Arabidopsis thaliana CRY2 (CRYPTOCHROME 2) AT1G04400 (CRY2)
           transcript variant AT1G04400.1 mRNA, complete cds
          Length = 2350

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 160 ttctttcttcctattttggg 179
           ||||||||||||||||||||
Sbjct: 158 ttctttcttcctattttggg 139
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>gb|AY576271.1| Arabidopsis thaliana strain CS6669 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3149

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 160 ttctttcttcctattttggg 179
           ||||||||||||||||||||
Sbjct: 587 ttctttcttcctattttggg 568
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>gb|AY576270.1| Arabidopsis thaliana strain CS6042 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3149

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 160 ttctttcttcctattttggg 179
           ||||||||||||||||||||
Sbjct: 587 ttctttcttcctattttggg 568
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>gb|AY576269.1| Arabidopsis thaliana strain CS6180 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3149

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 160 ttctttcttcctattttggg 179
           ||||||||||||||||||||
Sbjct: 587 ttctttcttcctattttggg 568
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>gb|AY576268.1| Arabidopsis thaliana strain CS6175 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3149

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 160 ttctttcttcctattttggg 179
           ||||||||||||||||||||
Sbjct: 587 ttctttcttcctattttggg 568
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>gb|AY576267.1| Arabidopsis thaliana strain CS1074 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3149

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 160 ttctttcttcctattttggg 179
           ||||||||||||||||||||
Sbjct: 587 ttctttcttcctattttggg 568
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>gb|AY576266.1| Arabidopsis thaliana strain CS902 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3202

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 160 ttctttcttcctattttggg 179
           ||||||||||||||||||||
Sbjct: 592 ttctttcttcctattttggg 573
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>gb|AY576265.1| Arabidopsis thaliana strain CS6694 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3201

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 160 ttctttcttcctattttggg 179
           ||||||||||||||||||||
Sbjct: 592 ttctttcttcctattttggg 573
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>gb|AY576264.1| Arabidopsis thaliana strain CS6739 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3201

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 160 ttctttcttcctattttggg 179
           ||||||||||||||||||||
Sbjct: 592 ttctttcttcctattttggg 573
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>gb|AY576263.1| Arabidopsis thaliana strain CS6788 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3201

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 160 ttctttcttcctattttggg 179
           ||||||||||||||||||||
Sbjct: 592 ttctttcttcctattttggg 573
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>gb|AY576262.1| Arabidopsis thaliana strain CS6622 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3201

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 160 ttctttcttcctattttggg 179
           ||||||||||||||||||||
Sbjct: 592 ttctttcttcctattttggg 573
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>gb|AY576261.1| Arabidopsis thaliana strain CS6764 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3201

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 160 ttctttcttcctattttggg 179
           ||||||||||||||||||||
Sbjct: 592 ttctttcttcctattttggg 573
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>gb|AY576260.1| Arabidopsis thaliana strain CS1008 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3201

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 160 ttctttcttcctattttggg 179
           ||||||||||||||||||||
Sbjct: 592 ttctttcttcctattttggg 573
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>gb|AY576259.1| Arabidopsis thaliana strain CS6098 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3201

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 160 ttctttcttcctattttggg 179
           ||||||||||||||||||||
Sbjct: 592 ttctttcttcctattttggg 573
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>gb|AY576258.1| Arabidopsis thaliana strain CS6092 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3202

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 160 ttctttcttcctattttggg 179
           ||||||||||||||||||||
Sbjct: 592 ttctttcttcctattttggg 573
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>gb|AY576257.1| Arabidopsis thaliana strain CS6630 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3202

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 160 ttctttcttcctattttggg 179
           ||||||||||||||||||||
Sbjct: 592 ttctttcttcctattttggg 573
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>gb|AY576256.1| Arabidopsis thaliana strain CS6823 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3202

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 160 ttctttcttcctattttggg 179
           ||||||||||||||||||||
Sbjct: 592 ttctttcttcctattttggg 573
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>gb|AY576255.1| Arabidopsis thaliana strain CS6703 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3202

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 160 ttctttcttcctattttggg 179
           ||||||||||||||||||||
Sbjct: 592 ttctttcttcctattttggg 573
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>gb|AY576254.1| Arabidopsis thaliana strain CS6780 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3202

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 160 ttctttcttcctattttggg 179
           ||||||||||||||||||||
Sbjct: 592 ttctttcttcctattttggg 573
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>gb|AY576253.1| Arabidopsis thaliana strain CS6865 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3202

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 160 ttctttcttcctattttggg 179
           ||||||||||||||||||||
Sbjct: 592 ttctttcttcctattttggg 573
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>gb|AY576252.1| Arabidopsis thaliana strain CS6796 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3202

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 160 ttctttcttcctattttggg 179
           ||||||||||||||||||||
Sbjct: 592 ttctttcttcctattttggg 573
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>gb|AY576251.1| Arabidopsis thaliana strain CS6770 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3202

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 160 ttctttcttcctattttggg 179
           ||||||||||||||||||||
Sbjct: 592 ttctttcttcctattttggg 573
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>gb|AY576250.1| Arabidopsis thaliana strain CS6632 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3202

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 160 ttctttcttcctattttggg 179
           ||||||||||||||||||||
Sbjct: 592 ttctttcttcctattttggg 573
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>gb|AY576249.1| Arabidopsis thaliana strain CS910 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3202

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 160 ttctttcttcctattttggg 179
           ||||||||||||||||||||
Sbjct: 592 ttctttcttcctattttggg 573
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>gb|AY576248.1| Arabidopsis thaliana strain CS20 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3202

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 160 ttctttcttcctattttggg 179
           ||||||||||||||||||||
Sbjct: 592 ttctttcttcctattttggg 573
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>gb|AY576247.1| Arabidopsis thaliana strain CS917 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3202

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 160 ttctttcttcctattttggg 179
           ||||||||||||||||||||
Sbjct: 592 ttctttcttcctattttggg 573
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>gb|AY576246.1| Arabidopsis thaliana strain CS6867 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3202

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 160 ttctttcttcctattttggg 179
           ||||||||||||||||||||
Sbjct: 592 ttctttcttcctattttggg 573
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>gb|AY576245.1| Arabidopsis thaliana strain CS6799 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3202

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 160 ttctttcttcctattttggg 179
           ||||||||||||||||||||
Sbjct: 592 ttctttcttcctattttggg 573
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>gb|AY576244.1| Arabidopsis thaliana strain CS6924 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3202

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 160 ttctttcttcctattttggg 179
           ||||||||||||||||||||
Sbjct: 592 ttctttcttcctattttggg 573
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>gb|AY576243.1| Arabidopsis thaliana strain CS6800 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3202

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 160 ttctttcttcctattttggg 179
           ||||||||||||||||||||
Sbjct: 592 ttctttcttcctattttggg 573
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>gb|AY576242.1| Arabidopsis thaliana strain CS1202 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3202

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 160 ttctttcttcctattttggg 179
           ||||||||||||||||||||
Sbjct: 592 ttctttcttcctattttggg 573
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>gb|AY576241.1| Arabidopsis thaliana strain CS1316 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3202

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 160 ttctttcttcctattttggg 179
           ||||||||||||||||||||
Sbjct: 592 ttctttcttcctattttggg 573
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>gb|AC166104.4| Mus musculus BAC clone RP23-320G7 from chromosome 15, complete sequence
          Length = 209081

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 156    ttcattctttcttcctattt 175
              ||||||||||||||||||||
Sbjct: 110587 ttcattctttcttcctattt 110606
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>gb|AC100052.10| Mus musculus chromosome 8, clone RP23-32L24, complete sequence
          Length = 220425

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 39     tcctctctctgaattgataa 58
              ||||||||||||||||||||
Sbjct: 120615 tcctctctctgaattgataa 120634
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>gb|AC122833.2| Mus musculus BAC clone RP23-181J12 from 15, complete sequence
          Length = 200339

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 156    ttcattctttcttcctattt 175
              ||||||||||||||||||||
Sbjct: 153615 ttcattctttcttcctattt 153634
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>gb|AC010196.5| Homo sapiens 12 BAC RP11-202H2 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 163246

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     ttattattatgtcatgtata 20
             ||||||||||||||||||||
Sbjct: 74959 ttattattatgtcatgtata 74940
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>emb|X99061.1|ATPHH1 A.thaliana PHH1 gene
          Length = 3353

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 160 ttctttcttcctattttggg 179
           ||||||||||||||||||||
Sbjct: 642 ttctttcttcctattttggg 623
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>gb|AY057442.1| Arabidopsis thaliana ecotype Ler cryptochrome 2 (CRY2) gene, complete
            cds
          Length = 4649

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 160  ttctttcttcctattttggg 179
            ||||||||||||||||||||
Sbjct: 1894 ttctttcttcctattttggg 1875
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>gb|AY057441.1| Arabidopsis thaliana ecotype Cvi cryptochrome 2 (CRY2) gene, complete
            cds
          Length = 4659

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 160  ttctttcttcctattttggg 179
            ||||||||||||||||||||
Sbjct: 1901 ttctttcttcctattttggg 1882
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>gb|AC023114.5| Homo sapiens BAC clone RP11-266O8 from 15, complete sequence
          Length = 164242

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 162    ctttcttcctattttgggct 181
              ||||||||||||||||||||
Sbjct: 126164 ctttcttcctattttgggct 126183
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>gb|U62549.1|ATU62549 Arabidopsis thaliana blue light photoreceptor/photolyase homolog
           (PHH1) mRNA, complete cds
          Length = 2359

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 160 ttctttcttcctattttggg 179
           ||||||||||||||||||||
Sbjct: 158 ttctttcttcctattttggg 139
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>gb|AC022166.7| Homo sapiens chromosome 16 clone RP11-525K10, complete sequence
          Length = 163998

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 208    tgtatctggnaatgcactgtgtg 230
              ||||||||| |||||||||||||
Sbjct: 127420 tgtatctggtaatgcactgtgtg 127442
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>gb|AC108483.3| Homo sapiens chromosome 16 clone RP11-170P24, complete sequence
          Length = 163976

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 208    tgtatctggnaatgcactgtgtg 230
              ||||||||| |||||||||||||
Sbjct: 149843 tgtatctggtaatgcactgtgtg 149821
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>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome
          Length = 3544776

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 157     tcattctttcttcctatttt 176
               ||||||||||||||||||||
Sbjct: 2209064 tcattctttcttcctatttt 2209083
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>emb|CT009709.22| Mouse DNA sequence from clone RP23-113L3 on chromosome 16, complete
             sequence
          Length = 70995

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 159   attctttcttcctattttgg 178
             ||||||||||||||||||||
Sbjct: 16270 attctttcttcctattttgg 16289
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>gb|AC000104.1|F19P19 Sequence of BAC F19P19 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 107527

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 160   ttctttcttcctattttggg 179
             ||||||||||||||||||||
Sbjct: 44933 ttctttcttcctattttggg 44914
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>emb|AL807238.5| Mouse DNA sequence from clone RP23-476F6 on chromosome 4, complete
             sequence
          Length = 169745

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 156   ttcattctttcttcctattt 175
             ||||||||||||||||||||
Sbjct: 92135 ttcattctttcttcctattt 92154


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,999,250
Number of Sequences: 3902068
Number of extensions: 1999250
Number of successful extensions: 36316
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36242
Number of HSP's gapped (non-prelim): 74
length of query: 274
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 252
effective length of database: 17,147,199,772
effective search space: 4321094342544
effective search space used: 4321094342544
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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