ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags27m21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VG48_SHV21 (Q01033) Hypothetical gene 48 protein 31 1.3
2FRU_DROME (Q8IN81) Sex determination protein fruitless 30 1.7
3UNC18_CAEEL (P34815) Putative acetylcholine regulator unc-18 (Un... 30 2.9
4LARGE_CHICK (Q66PG3) Glycosyltransferase-like protein LARGE1 (EC... 28 8.3

>VG48_SHV21 (Q01033) Hypothetical gene 48 protein|
          Length = 797

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -1

Query: 272 LNLVRHPECLEGLLPLKRDTXESLRDLADVTWTXKELLFAC-CR*QTLSEEG 120
           LNL+   EC +GL  L R   E ++D  DV  + +E+ + C  R   L EEG
Sbjct: 77  LNLI---ECTQGLKFLIRSLYEKIKDQCDVKSSIREIFYDCKARLLLLLEEG 125



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>FRU_DROME (Q8IN81) Sex determination protein fruitless|
          Length = 955

 Score = 30.4 bits (67), Expect = 1.7
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +2

Query: 104 CTEKQFPLQIGSVICSRQRGAPWXSTXHLPGHATTPXCPSSVAKAPP 244
           C  K   L + ++ CSRQ+      + H P H +   CP+  A +PP
Sbjct: 712 CEYKCKELNMRAIRCSRQQHMMSHYSPHHPHHRSLIDCPAEAAYSPP 758



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>UNC18_CAEEL (P34815) Putative acetylcholine regulator unc-18 (Uncoordinated|
           protein 18)
          Length = 591

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = -1

Query: 281 LSLLNLVRHPECLEGLLPLKRDTXESLRDLADVTWTXKELLFACCR*QTLSEEGI 117
           +SL  +V H    + + PLK+    S  ++  V      +L +CC+   + EEGI
Sbjct: 1   MSLKQIVGHKLLNDVIRPLKKGDGRSAWNVLIVDTLAMRMLSSCCKMHNIMEEGI 55



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>LARGE_CHICK (Q66PG3) Glycosyltransferase-like protein LARGE1 (EC 2.4.-.-)|
           (Acetylglucosaminyltransferase-like 1A)
          Length = 756

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
 Frame = +1

Query: 112 EAIPSSDRVCHLQQAKRSSLXVHVTSARSRND---SXVSLFSGKSPSKHSG 255
           E+ P S R     Q  R SL V +      N      +SL  G+SPS H G
Sbjct: 46  ESQPHSPRYTASSQRDRESLEVRMREVEEENRVLRKQLSLAQGRSPSHHRG 96


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,156,570
Number of Sequences: 219361
Number of extensions: 963648
Number of successful extensions: 2448
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2448
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2169600302
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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