ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags28b20 |
|---|---|
| Clone Library Name | barley_pub |
>MMS2_SCHPO (O74983) Ubiquitin-conjugating enzyme spm2 (Ubiquitin-conjugating| enzyme variant MMS2 homolog) (UEV MMS2) Length = 139 Score = 57.4 bits (137), Expect = 8e-09 Identities = 27/59 (45%), Positives = 36/59 (61%) Frame = -3 Query: 385 RXKMXCVXXXXGLVDQXKFSXLSNWXREYTMENILIQLKKEMXTSHNRKLVQPPXGTVY 209 R + V G V+ K L +W REY+ME +L+ LKKEM +S NRKL QPP G+ + Sbjct: 80 RINLPGVDGETGKVNPHKIDCLRHWKREYSMETVLLDLKKEMASSSNRKLPQPPEGSTF 138
>MMS2_YEAST (P53152) Ubiquitin-conjugating enzyme variant MMS2 (UEV MMS2)| Length = 137 Score = 50.1 bits (118), Expect = 1e-06 Identities = 25/59 (42%), Positives = 33/59 (55%) Frame = -3 Query: 385 RXKMXCVXXXXGLVDQXKFSXLSNWXREYTMENILIQLKKEMXTSHNRKLVQPPXGTVY 209 + + CV G V Q F L +W R YTME +L+ L+KEM T N+KL QP G + Sbjct: 80 KINLPCVNPTTGEV-QTDFHTLRDWKRAYTMETLLLDLRKEMATPANKKLRQPKEGETF 137
>UB2V1_HUMAN (Q13404) Ubiquitin-conjugating enzyme E2 variant 1 (UEV-1) (CROC-1)| (Ubiquitin-conjugating enzyme variant Kua) (TRAF6-regulated IKK activator 1 beta Uev1A) Length = 221 Score = 43.1 bits (100), Expect = 2e-04 Identities = 20/59 (33%), Positives = 31/59 (52%) Frame = -3 Query: 385 RXKMXCVXXXXGLVDQXKFSXLSNWXREYTMENILIQLKKEMXTSHNRKLVQPPXGTVY 209 + M V G+VD S L+ W Y+++ +L +L++ M + N KL QPP G Y Sbjct: 161 KINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQCY 219
>UB2V2_MOUSE (Q9D2M8) Ubiquitin-conjugating enzyme E2 variant 2 (Ubc-like| protein MMS2) Length = 144 Score = 42.4 bits (98), Expect = 3e-04 Identities = 19/59 (32%), Positives = 30/59 (50%) Frame = -3 Query: 385 RXKMXCVXXXXGLVDQXKFSXLSNWXREYTMENILIQLKKEMXTSHNRKLVQPPXGTVY 209 + M + G+VD L+ W Y+++ IL +L++ M + N KL QPP G Y Sbjct: 84 KINMNGINNSSGMVDARSIPVLAKWQNSYSIKVILQELRRLMMSKENMKLPQPPEGQTY 142
>UB2V2_RAT (Q7M767) Ubiquitin-conjugating enzyme E2 variant 2| (Ubiquitin-conjugating enzyme variant MMS2) Length = 144 Score = 42.0 bits (97), Expect = 4e-04 Identities = 18/59 (30%), Positives = 30/59 (50%) Frame = -3 Query: 385 RXKMXCVXXXXGLVDQXKFSXLSNWXREYTMENILIQLKKEMXTSHNRKLVQPPXGTVY 209 + M + G+VD L+ W Y+++ +L +L++ M + N KL QPP G Y Sbjct: 84 KINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQTY 142
>UB2V2_HUMAN (Q15819) Ubiquitin-conjugating enzyme E2 variant 2 (MMS2)| (Enterocyte differentiation-associated factor EDAF-1) (Enterocyte differentiation-promoting factor) (EDPF-1) (Vitamin D3-inducible protein) (DDVit 1) Length = 144 Score = 42.0 bits (97), Expect = 4e-04 Identities = 18/59 (30%), Positives = 30/59 (50%) Frame = -3 Query: 385 RXKMXCVXXXXGLVDQXKFSXLSNWXREYTMENILIQLKKEMXTSHNRKLVQPPXGTVY 209 + M + G+VD L+ W Y+++ +L +L++ M + N KL QPP G Y Sbjct: 84 KINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQTY 142
>UB2V1_MOUSE (Q9CZY3) Ubiquitin-conjugating enzyme E2 variant 1 (UEV-1) (CROC-1)| Length = 147 Score = 41.6 bits (96), Expect = 5e-04 Identities = 20/59 (33%), Positives = 31/59 (52%) Frame = -3 Query: 385 RXKMXCVXXXXGLVDQXKFSXLSNWXREYTMENILIQLKKEMXTSHNRKLVQPPXGTVY 209 R M V G+VD + L+ W ++++ IL +L++ M + N KL QPP G Y Sbjct: 87 RVNMSGVSSSNGVVDPRATAVLAKWQNSHSIKVILQELRRLMMSKENMKLPQPPEGQCY 145
>OR1C1_HUMAN (Q15619) Olfactory receptor 1C1 (Olfactory receptor TPCR27)| (Olfactory receptor OR1-42) Length = 314 Score = 30.0 bits (66), Expect = 1.4 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = -3 Query: 115 IMYLNFDGVLVCVCASLSLTVLAGPWRYTTWVNLC 11 + ++N D +L+CV A + P YT +NLC Sbjct: 105 VSFVNMDSLLLCVMAYDRYVAICHPLHYTARMNLC 139
>Y2333_GEOSL (Q74AM0) UPF0182 protein GSU2333| Length = 894 Score = 28.1 bits (61), Expect = 5.3 Identities = 15/45 (33%), Positives = 24/45 (53%) Frame = -3 Query: 148 YRIRSQHLVQTIMYLNFDGVLVCVCASLSLTVLAGPWRYTTWVNL 14 YR++ +VQ + L+ + A+L L++LAG W W NL Sbjct: 91 YRLQRDEMVQMVKPLS-------ILAALVLSLLAGRWGALQWQNL 128
>MYOD1_CAEEL (P22980) Myoblast determination protein 1 homolog (MyoD protein 1)| (Helix-loop-helix protein 1) Length = 324 Score = 27.7 bits (60), Expect = 7.0 Identities = 14/32 (43%), Positives = 16/32 (50%) Frame = -1 Query: 255 HHTTGN*CSLRRGRSTERAHRIATVIPRTLAV 160 HH GN LRR S +R RI IP A+ Sbjct: 271 HHKLGNAVDLRRRNSLDRLSRIVASIPNEEAM 302
>KPC1_YEAST (P24583) Protein kinase C-like 1 (EC 2.7.11.13) (PKC 1)| Length = 1151 Score = 27.3 bits (59), Expect = 9.1 Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 2/40 (5%) Frame = +3 Query: 36 RHGPANTVKES--EAHTHTRTPSKFKYIIVCTKCCDLMRY 149 RHG KE E H H F I+ C C D +RY Sbjct: 398 RHGAIINRKEEIFEQHGHHFVQKSFYNIMCCAYCGDFLRY 437
>ATM_SCHPO (O74630) Serine/threonine-protein kinase tel1 (EC 2.7.11.1)| (DNA-damage checkpoint kinase tel1) (Telomere length regulation protein 1) (ATM homolog) Length = 2812 Score = 27.3 bits (59), Expect = 9.1 Identities = 12/33 (36%), Positives = 21/33 (63%) Frame = -3 Query: 331 FSXLSNWXREYTMENILIQLKKEMXTSHNRKLV 233 F LSNW +E T++ L+ + + T+H+ KL+ Sbjct: 1656 FDSLSNWTKEETLK--LLNMMGKSSTTHSLKLL 1686
>KPC1_CANAL (P43057) Protein kinase C-like 1 (EC 2.7.11.13) (PKC 1)| Length = 1097 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 2/40 (5%) Frame = +3 Query: 36 RHGPANTVKES--EAHTHTRTPSKFKYIIVCTKCCDLMRY 149 RHG KE E H H +F I+ C C + +RY Sbjct: 399 RHGAIRQKKEEVFEKHGHQFVQKQFYNIMSCALCGEFLRY 438 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,183,542 Number of Sequences: 219361 Number of extensions: 990767 Number of successful extensions: 1818 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 1777 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1816 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 1386249648 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
