ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags28b20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK068060.1| Oryza sativa (japonica cultivar-group) cDNA clon... 143 5e-31
2dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 129 7e-27
3gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 129 7e-27
4emb|AL732537.4|CNS08C9C Oryza sativa chromosome 12, . BAC OSJNBa... 129 7e-27
5gb|AF382210.1|AF382210 Sterkiella histriomuscorum E2 ubiquitin-c... 40 5.2
6gb|AF139024.2|AF139024 Sterkiella histriomuscorum E2 ubiquitin-c... 40 5.2
7gb|AC008686.8| Homo sapiens chromosome 19 clone CTB-5E10, comple... 40 5.2
8gb|U95739.1|HSU95739 Human chromosome 16p11.2-p12 BAC clone CIT9... 40 5.2
9emb|AL671900.5| Mouse DNA sequence from clone RP23-282O5 on chro... 40 5.2

>dbj|AK068060.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013130B07, full
           insert sequence
          Length = 924

 Score =  143 bits (72), Expect = 5e-31
 Identities = 123/142 (86%)
 Strand = Plus / Minus

                                                                       
Query: 216 gtcccctncggaggctgcactagtttccggttgtgtgatgtcnccatctctttcttaagc 275
           |||||||  |||||||||||||||||||||||||||||||   |||||||||||||||| 
Sbjct: 632 gtcccctctggaggctgcactagtttccggttgtgtgatgctgccatctctttcttaagt 573

                                                                       
Query: 276 tgtatcaagatgttctccattgtgtactcacggngccagttggacaacangctgaacttn 335
           ||  |||||||   ||||||||||||||| ||| |||| || ||||||| ||||||||| 
Sbjct: 572 tgggtcaagatagcctccattgtgtactcgcggcgccaatttgacaacaggctgaacttc 513

                                 
Query: 336 ctttggtccaccaatccantct 357
           |||||||| ||||||||| |||
Sbjct: 512 ctttggtcaaccaatccattct 491



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  129 bits (65), Expect = 7e-27
 Identities = 111/128 (86%)
 Strand = Plus / Plus

                                                                            
Query: 216      gtcccctncggaggctgcactagtttccggttgtgtgatgtcnccatctctttcttaagc 275
                |||||||  |||||||||||||||||||||||||||||||   |||||||||||||||| 
Sbjct: 25592762 gtcccctctggaggctgcactagtttccggttgtgtgatgctgccatctctttcttaagt 25592821

                                                                            
Query: 276      tgtatcaagatgttctccattgtgtactcacggngccagttggacaacangctgaacttn 335
                ||  |||||||   ||||||||||||||| ||| |||| || ||||||| ||||||||| 
Sbjct: 25592822 tgggtcaagatagcctccattgtgtactcgcggcgccaatttgacaacaggctgaacttc 25592881

                        
Query: 336      ctttggtc 343
                ||||||||
Sbjct: 25592882 ctttggtc 25592889



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  129 bits (65), Expect = 7e-27
 Identities = 111/128 (86%)
 Strand = Plus / Plus

                                                                            
Query: 216      gtcccctncggaggctgcactagtttccggttgtgtgatgtcnccatctctttcttaagc 275
                |||||||  |||||||||||||||||||||||||||||||   |||||||||||||||| 
Sbjct: 25520938 gtcccctctggaggctgcactagtttccggttgtgtgatgctgccatctctttcttaagt 25520997

                                                                            
Query: 276      tgtatcaagatgttctccattgtgtactcacggngccagttggacaacangctgaacttn 335
                ||  |||||||   ||||||||||||||| ||| |||| || ||||||| ||||||||| 
Sbjct: 25520998 tgggtcaagatagcctccattgtgtactcgcggcgccaatttgacaacaggctgaacttc 25521057

                        
Query: 336      ctttggtc 343
                ||||||||
Sbjct: 25521058 ctttggtc 25521065



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>emb|AL732537.4|CNS08C9C Oryza sativa chromosome 12, . BAC OSJNBa0036L12 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 127003

 Score =  129 bits (65), Expect = 7e-27
 Identities = 111/128 (86%)
 Strand = Plus / Minus

                                                                         
Query: 216   gtcccctncggaggctgcactagtttccggttgtgtgatgtcnccatctctttcttaagc 275
             |||||||  |||||||||||||||||||||||||||||||   |||||||||||||||| 
Sbjct: 80956 gtcccctctggaggctgcactagtttccggttgtgtgatgctgccatctctttcttaagt 80897

                                                                         
Query: 276   tgtatcaagatgttctccattgtgtactcacggngccagttggacaacangctgaacttn 335
             ||  |||||||   ||||||||||||||| ||| |||| || ||||||| ||||||||| 
Sbjct: 80896 tgggtcaagatagcctccattgtgtactcgcggcgccaatttgacaacaggctgaacttc 80837

                     
Query: 336   ctttggtc 343
             ||||||||
Sbjct: 80836 ctttggtc 80829



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>gb|AF382210.1|AF382210 Sterkiella histriomuscorum E2 ubiquitin-conjugating enzyme variant
           (UEV) gene, complete cds
          Length = 787

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 278 tatcaagatgttctccattgtgta 301
           ||||||||| ||||||||||||||
Sbjct: 513 tatcaagattttctccattgtgta 490



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>gb|AF139024.2|AF139024 Sterkiella histriomuscorum E2 ubiquitin-conjugating enzyme variant
           (UEV) mRNA, complete cds
          Length = 428

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 278 tatcaagatgttctccattgtgta 301
           ||||||||| ||||||||||||||
Sbjct: 362 tatcaagattttctccattgtgta 339



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>gb|AC008686.8| Homo sapiens chromosome 19 clone CTB-5E10, complete sequence
          Length = 150192

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 260  catctctttcttaagctgta 279
            ||||||||||||||||||||
Sbjct: 6059 catctctttcttaagctgta 6078



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>gb|U95739.1|HSU95739 Human chromosome 16p11.2-p12 BAC clone CIT987SK-224D6 complete sequence
          Length = 69015

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 260   catctctttcttaagctgta 279
             ||||||||||||||||||||
Sbjct: 46130 catctctttcttaagctgta 46149



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>emb|AL671900.5| Mouse DNA sequence from clone RP23-282O5 on chromosome X, complete
              sequence
          Length = 185389

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 99     aagtttaagtacataatcgt 118
              ||||||||||||||||||||
Sbjct: 102700 aagtttaagtacataatcgt 102719


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,880,123
Number of Sequences: 3902068
Number of extensions: 1880123
Number of successful extensions: 25228
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 25209
Number of HSP's gapped (non-prelim): 19
length of query: 387
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 365
effective length of database: 17,147,199,772
effective search space: 6258727916780
effective search space used: 6258727916780
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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