| Clone Name | rbags28b20 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK068060.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013130B07, full insert sequence Length = 924 Score = 143 bits (72), Expect = 5e-31 Identities = 123/142 (86%) Strand = Plus / Minus Query: 216 gtcccctncggaggctgcactagtttccggttgtgtgatgtcnccatctctttcttaagc 275 ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 632 gtcccctctggaggctgcactagtttccggttgtgtgatgctgccatctctttcttaagt 573 Query: 276 tgtatcaagatgttctccattgtgtactcacggngccagttggacaacangctgaacttn 335 || ||||||| ||||||||||||||| ||| |||| || ||||||| ||||||||| Sbjct: 572 tgggtcaagatagcctccattgtgtactcgcggcgccaatttgacaacaggctgaacttc 513 Query: 336 ctttggtccaccaatccantct 357 |||||||| ||||||||| ||| Sbjct: 512 ctttggtcaaccaatccattct 491
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 129 bits (65), Expect = 7e-27 Identities = 111/128 (86%) Strand = Plus / Plus Query: 216 gtcccctncggaggctgcactagtttccggttgtgtgatgtcnccatctctttcttaagc 275 ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 25592762 gtcccctctggaggctgcactagtttccggttgtgtgatgctgccatctctttcttaagt 25592821 Query: 276 tgtatcaagatgttctccattgtgtactcacggngccagttggacaacangctgaacttn 335 || ||||||| ||||||||||||||| ||| |||| || ||||||| ||||||||| Sbjct: 25592822 tgggtcaagatagcctccattgtgtactcgcggcgccaatttgacaacaggctgaacttc 25592881 Query: 336 ctttggtc 343 |||||||| Sbjct: 25592882 ctttggtc 25592889
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 129 bits (65), Expect = 7e-27 Identities = 111/128 (86%) Strand = Plus / Plus Query: 216 gtcccctncggaggctgcactagtttccggttgtgtgatgtcnccatctctttcttaagc 275 ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 25520938 gtcccctctggaggctgcactagtttccggttgtgtgatgctgccatctctttcttaagt 25520997 Query: 276 tgtatcaagatgttctccattgtgtactcacggngccagttggacaacangctgaacttn 335 || ||||||| ||||||||||||||| ||| |||| || ||||||| ||||||||| Sbjct: 25520998 tgggtcaagatagcctccattgtgtactcgcggcgccaatttgacaacaggctgaacttc 25521057 Query: 336 ctttggtc 343 |||||||| Sbjct: 25521058 ctttggtc 25521065
>emb|AL732537.4|CNS08C9C Oryza sativa chromosome 12, . BAC OSJNBa0036L12 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 127003 Score = 129 bits (65), Expect = 7e-27 Identities = 111/128 (86%) Strand = Plus / Minus Query: 216 gtcccctncggaggctgcactagtttccggttgtgtgatgtcnccatctctttcttaagc 275 ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 80956 gtcccctctggaggctgcactagtttccggttgtgtgatgctgccatctctttcttaagt 80897 Query: 276 tgtatcaagatgttctccattgtgtactcacggngccagttggacaacangctgaacttn 335 || ||||||| ||||||||||||||| ||| |||| || ||||||| ||||||||| Sbjct: 80896 tgggtcaagatagcctccattgtgtactcgcggcgccaatttgacaacaggctgaacttc 80837 Query: 336 ctttggtc 343 |||||||| Sbjct: 80836 ctttggtc 80829
>gb|AF382210.1|AF382210 Sterkiella histriomuscorum E2 ubiquitin-conjugating enzyme variant (UEV) gene, complete cds Length = 787 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 278 tatcaagatgttctccattgtgta 301 ||||||||| |||||||||||||| Sbjct: 513 tatcaagattttctccattgtgta 490
>gb|AF139024.2|AF139024 Sterkiella histriomuscorum E2 ubiquitin-conjugating enzyme variant (UEV) mRNA, complete cds Length = 428 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 278 tatcaagatgttctccattgtgta 301 ||||||||| |||||||||||||| Sbjct: 362 tatcaagattttctccattgtgta 339
>gb|AC008686.8| Homo sapiens chromosome 19 clone CTB-5E10, complete sequence Length = 150192 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 260 catctctttcttaagctgta 279 |||||||||||||||||||| Sbjct: 6059 catctctttcttaagctgta 6078
>gb|U95739.1|HSU95739 Human chromosome 16p11.2-p12 BAC clone CIT987SK-224D6 complete sequence Length = 69015 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 260 catctctttcttaagctgta 279 |||||||||||||||||||| Sbjct: 46130 catctctttcttaagctgta 46149
>emb|AL671900.5| Mouse DNA sequence from clone RP23-282O5 on chromosome X, complete sequence Length = 185389 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 aagtttaagtacataatcgt 118 |||||||||||||||||||| Sbjct: 102700 aagtttaagtacataatcgt 102719 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,880,123 Number of Sequences: 3902068 Number of extensions: 1880123 Number of successful extensions: 25228 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 25209 Number of HSP's gapped (non-prelim): 19 length of query: 387 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 365 effective length of database: 17,147,199,772 effective search space: 6258727916780 effective search space used: 6258727916780 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)