>YFLS_BACSU (O34726) Putative malate transporter yflS|
          Length = 478

 Score =  125 bits (314), Expect = 9e-29
 Identities = 54/113 (47%), Positives = 80/113 (70%)
 Frame = -1

Query: 590 SWPAAFGVLQASYFFIHYLFASQTAHVGALYSAFLAMHLAAGVPAILSALALTYNSNLFG 411
           SW  AF +L   Y++ HY FAS TAH+ A+YSAFLA+ +AAG P +L+AL+L + SNLFG
Sbjct: 366 SWIVAFIILIVVYYYSHYFFASATAHISAMYSAFLAVVVAAGAPPLLAALSLAFISNLFG 425

Query: 410 ALTHYSSGQSAVYYGAGYVDLPDVFKLGFTAAAINALIWGVVGTFWWKFLGLY 252
           + THY SG + V++GAGY+     + +GF  + ++ ++W V+G  WWK LG++
Sbjct: 426 STTHYGSGAAPVFFGAGYIPQGKWWSIGFILSIVHIIVWLVIGGLWWKVLGIW 478

>SOT1_SPIOL (Q41364) 2-oxoglutarate/malate translocator, chloroplast precursor|
          Length = 569

 Score =  124 bits (311), Expect = 2e-28
 Identities = 56/114 (49%), Positives = 76/114 (66%)
 Frame = -1

Query: 593 LSWPAAFGVLQASYFFIHYLFASQTAHVGALYSAFLAMHLAAGVPAILSALALTYNSNLF 414
           LSW  +FGVL   YF+ HY FAS  AH+GA+++AFL++  A G P  L+A+ L++ SNL 
Sbjct: 456 LSWQMSFGVLVLLYFYSHYFFASGAAHIGAMFTAFLSVASALGTPPFLAAIVLSFLSNLM 515

Query: 413 GALTHYSSGQSAVYYGAGYVDLPDVFKLGFTAAAINALIWGVVGTFWWKFLGLY 252
           G LTHY  G + V+YGA YV LP  +  GF  + +N +IW  VG  WWK +GL+
Sbjct: 516 GGLTHYGIGSAPVFYGANYVPLPQWWGYGFLISIVNLIIWLGVGGLWWKAIGLW 569

>YBHI_ECOLI (P75763) Inner membrane protein ybhI|
          Length = 477

 Score = 66.6 bits (161), Expect = 5e-11
 Identities = 32/106 (30%), Positives = 55/106 (51%)
 Frame = -1

Query: 578 AFGVLQASYFFIHYLFASQTAHVGALYSAFLAMHLAAGVPAILSALALTYNSNLFGALTH 399
           AF V+      + Y FAS +A++ A+   F  +   +G P +L+ALAL ++++  G +TH
Sbjct: 366 AFFVIIFLSIIVRYFFASGSAYIVAMLPVFAMLANVSGAPLMLTALALLFSNSYGGMVTH 425

Query: 398 YSSGQSAVYYGAGYVDLPDVFKLGFTAAAINALIWGVVGTFWWKFL 261
           Y      V +G GY D+   + +G     +  L+   +G +WW  L
Sbjct: 426 YGGAAGPVIFGVGYNDIKSWWLVGAVLTILTFLVHITLGVWWWNML 471

>Y020_HAEIN (Q57048) Hypothetical protein HI0020|
          Length = 479

 Score = 64.7 bits (156), Expect = 2e-10
 Identities = 33/95 (34%), Positives = 49/95 (51%)
 Frame = -1

Query: 545 IHYLFASQTAHVGALYSAFLAMHLAAGVPAILSALALTYNSNLFGALTHYSSGQSAVYYG 366
           + YLFAS  A+V A+   F  +    G P  L AL L + ++  G++THY  G   + +G
Sbjct: 379 VRYLFASGGAYVAAMVPVFATVGHVTGAPTELLALGLVFANSYGGSVTHYGGGPGPIAFG 438

Query: 365 AGYVDLPDVFKLGFTAAAINALIWGVVGTFWWKFL 261
           AGY D+   +  G   A  + +I   +G  WWK L
Sbjct: 439 AGYNDIKSWWITGAIIAFGSLIIHLTIGMAWWKLL 473

>CITT_ECOLI (P0AE74) Citrate carrier (Citrate transporter) (Citrate/succinate|
           antiporter)
          Length = 487

 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
 Frame = -1

Query: 569 VLQASYFFIHYLFASQTAHVGALYSAFLAMHLAA-GVPAILSALALTYNSNLFGALTHYS 393
           VL   ++F HYLFAS +AH   +    LA+     GVP     + L  +  + G LT Y+
Sbjct: 383 VLVLVFYFAHYLFASLSAHTATMLPVILAVGKGIPGVPMEQLCILLVLSIGIMGCLTPYA 442

Query: 392 SGQSAVYYGAGYVDLPDVFKLGFTAAAINALIWGVVGTFWWKFLGLY 252
           +G   + YG GYV   D ++LG     I   +  +VG   W  L ++
Sbjct: 443 TGPGVIIYGCGYVKSKDYWRLGAIFGVIYISMLLLVG---WPILAMW 486

>CITT_ECO57 (P0AE75) Citrate carrier (Citrate transporter) (Citrate/succinate|
           antiporter)
          Length = 487

 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
 Frame = -1

Query: 569 VLQASYFFIHYLFASQTAHVGALYSAFLAMHLAA-GVPAILSALALTYNSNLFGALTHYS 393
           VL   ++F HYLFAS +AH   +    LA+     GVP     + L  +  + G LT Y+
Sbjct: 383 VLVLVFYFAHYLFASLSAHTATMLPVILAVGKGIPGVPMEQLCILLVLSIGIMGCLTPYA 442

Query: 392 SGQSAVYYGAGYVDLPDVFKLGFTAAAINALIWGVVGTFWWKFLGLY 252
           +G   + YG GYV   D ++LG     I   +  +VG   W  L ++
Sbjct: 443 TGPGVIIYGCGYVKSKDYWRLGAIFGVIYISMLLLVG---WPILAMW 486

>TTDT_ECOLI (P39414) Putative tartrate carrier (Tartrate transporter)|
           (Tartrate/succinate antiporter)
          Length = 487

 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
 Frame = -1

Query: 554 YFFIHYLFASQTAHVGALYSAFLAMHLAAG-VPAILSALALTYNSNLFGALTHYSSGQSA 378
           ++ + Y FAS TA+  AL    +A  LA   +P  +  L +     L   LT Y++G S 
Sbjct: 387 FYLLRYFFASATAYTSALAPMMIAAALAMPEIPLPVFCLMVGAAIGLGSILTPYATGPSP 446

Query: 377 VYYGAGYVDLPDVFKLGFTAAAINALIWGVVGTFW 273
           +YYG+GY+   D ++LG     I  ++  + G  W
Sbjct: 447 IYYGSGYLPTADYWRLGAIFGLIFLVLLVITGLLW 481

>Y608_HAEIN (Q57486) Hypothetical protein HI0608|
          Length = 461

 Score = 38.9 bits (89), Expect = 0.011
 Identities = 24/101 (23%), Positives = 49/101 (48%)
 Frame = -1

Query: 572 GVLQASYFFIHYLFASQTAHVGALYSAFLAMHLAAGVPAILSALALTYNSNLFGALTHYS 393
           G+L A++      F S TA    L   F+++  + G+P I  AL +   ++    L   +
Sbjct: 360 GLLVAAFIIFLTEFTSNTASAALLVPIFISIAQSLGMPEIGLALIIGIGASCAFMLP-VA 418

Query: 392 SGQSAVYYGAGYVDLPDVFKLGFTAAAINALIWGVVGTFWW 270
           +  +A+ +G+G V   ++ K+GF    +  ++   +G  +W
Sbjct: 419 TPPNAIVFGSGQVKQSEMVKVGFLLNLVCVVVIATMGYMFW 459

>TOP1_MYCPN (P78032) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)|
           (Omega-protein) (Relaxing enzyme) (Untwisting enzyme)
           (Swivelase)
          Length = 711

 Score = 33.1 bits (74), Expect = 0.63
 Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 11/90 (12%)
 Frame = +3

Query: 126 PLIIHFTKHLRRKMRSLRMVSHIGLSGALKNNFHQLTPEKPSI---KPQEFPPKC----- 281
           PL+  +TK    K         +G S      +++ +  KP++   K +E  P+C     
Sbjct: 630 PLLYRYTKRGNEKF--------VGCSNFPNCKYNEFSQNKPNLTLEKLEELCPECNSQLV 681

Query: 282 ---TNYSPNQSINRCCCKPQLEYIRKVNIS 362
              T ++PN++   C   P+  YI+K N S
Sbjct: 682 KRRTKFNPNKTFVGCSNFPRCRYIKKDNAS 711

>YKS7_YEAST (P34231) Protein YKL187C|
          Length = 750

 Score = 33.1 bits (74), Expect = 0.63
 Identities = 23/94 (24%), Positives = 44/94 (46%)
 Frame = -1

Query: 548 FIHYLFASQTAHVGALYSAFLAMHLAAGVPAILSALALTYNSNLFGALTHYSSGQSAVYY 369
           FI  L+ ++      L+   LA+H+  GV  +L+A+ ++        +    SG +   Y
Sbjct: 562 FIILLYFNRYMFKQPLWLIALALHVCVGVATVLAAIIISV------MIAIIKSGTADDKY 615

Query: 368 GAGYVDLPDVFKLGFTAAAINALIWGVVGTFWWK 267
           G  +   P    L +TA A++ +  G++   WW+
Sbjct: 616 GVVFKAGPAYTGLIWTAFALSFIATGLIIYTWWR 649

>EXPR_XANCP (P23314) Extracellular protease precursor (EC 3.4.21.-)|
          Length = 580

 Score = 33.1 bits (74), Expect = 0.63
 Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
 Frame = -1

Query: 491 FLAMHLAAGVPAILSALALTYNSNLFGALTHYSSGQSAVYYGAGYVDLPDVFKLGFTAAA 312
           + A    AG+PA  S+   T+ +    A+T+ ++G +   YGA  V +  + K G + + 
Sbjct: 220 YAANECGAGIPAASSSWHGTHVAGTVAAVTNNTTGVAGTAYGAKVVPVRVLGKCGGSLSD 279

Query: 311 I-NALIWGVVGT 279
           I +A++W   GT
Sbjct: 280 IADAIVWASGGT 291

>HXB4_CHICK (P14840) Homeobox protein Hox-B4 (Chox-Z)|
          Length = 245

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +3

Query: 195 GLSGALKNNFHQLTPEKPSIKPQEFPPKCTNYSPNQSINRCCCKPQLEY--IRKVNISS 365
           GL   L    H   P  PS      PP C+  S NQS +   CK  + Y  ++KV++S+
Sbjct: 87  GLQSHLSEPNHPCEPGTPSP-----PPSCSQNSLNQSPSNSSCKEPVVYPWMKKVHVST 140

>MEMP_RALEU (Q07252) Membrane protein|
          Length = 513

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 2/108 (1%)
 Frame = -1

Query: 575 FGVLQASYFFIHYLFASQTAHVGALYSAFLAM--HLAAGVPAILSALALTYNSNLFGALT 402
           F +L A    IH  FAS TA   AL    +A+   L   +  +   + L +  + FG + 
Sbjct: 405 FAILSAFLILIHLGFASATALTAALLPILIAVLQTLPGDINRVGMTMLLGFTVS-FGFIL 463

Query: 401 HYSSGQSAVYYGAGYVDLPDVFKLGFTAAAINALIWGVVGTFWWKFLG 258
             ++ Q+ V  G    +     ++G     I   +  +    +W++LG
Sbjct: 464 PINAPQNMVCLGTETFNGRQFARIGIPVTIIGYAMMLLFAATYWRWLG 511

>PCP2_RALSO (Q8XT56) Pyrrolidone-carboxylate peptidase 2 (EC 3.4.19.3)|
           (5-oxoprolyl-peptidase 2) (Pyroglutamyl-peptidase I 2)
           (PGP-I 2) (Pyrase 2)
          Length = 215

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = -1

Query: 473 AAGVPAILSALALTYNSN-LFGALTHYSSGQSAVYYGAGYVDLP 345
           AAGVPA +S  A TYN N LF  L H+ + ++    G G++ +P
Sbjct: 127 AAGVPAAVSQSAGTYNCNHLFYGLMHHIATRAPRMRG-GFIHVP 169

>YJDB_ECOLI (P30845) UPF0141 protein yjdB|
          Length = 547

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +2

Query: 125 PSYYTFHQAPPKKDEVTPNGEPHRAFWCTKEQFSSTY 235
           P+YY  ++ PP+  + TP  + +    CTKEQ  +TY
Sbjct: 387 PTYY--NRYPPQFRKFTPTCDTNEIQTCTKEQLVNTY 421

>JAG1A_BRARE (Q90Y57) Jagged-1a precursor (Jagged1a) (Jagged1)|
          Length = 1242

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
 Frame = -3

Query: 519 CTCWSSILGVSCHAPSSWC---SCYTLSTCSDV--QFKSLWSTNTL**W--AVCGLLWSW 361
           C C +   G +CH+  S C   +C    TCSD    FK L S      W  A C +  + 
Sbjct: 694 CECENGWKGKTCHSRESQCDEDTCNNGGTCSDEGDSFKCLCSPG----WEGATCNIAKNS 749

Query: 360 IC*PS*C 340
            C P+ C
Sbjct: 750 SCLPNPC 756


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,535,926
Number of Sequences: 219361
Number of extensions: 1982995
Number of successful extensions: 4796
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 4603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4794
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5253413348
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)