>BRCA1_MACMU (Q6J6I9) Breast cancer type 1 susceptibility protein homolog|
          Length = 1863

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
 Frame = +3

Query: 108 SICNSLIIYYCGSNRA*SRMQKRAPDYYNVKRNNIEKVAFICHETKSWMLLEPRGFHHGW 287
           S  ++L +  CG+N   S +Q          R N+EK  F C+++K   L   R  H+ W
Sbjct: 264 SSVSNLHVEPCGTNTHASSLQHENSLLLTKDRMNVEKAEF-CNKSKQPGL--ARSQHNRW 320

Query: 288 QHDDEILRQDNRTPQEEHQ---SKRVLREEASISMQMLTC 398
               E    D +TP  E +   +   L E    + Q L C
Sbjct: 321 TGSKETC-NDRQTPSTEKKVDLNANALYERKEWNKQKLPC 359

>MYCB2_HUMAN (O75592) Probable ubiquitin ligase protein MYCBP2 (EC 6.3.2.-) (Myc|
            binding protein 2) (Protein associated with Myc)
            (Pam/highwire/rpm-1 protein)
          Length = 4641

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +3

Query: 237  ETKSWMLLEPRGFHHGWQHDDE--ILRQDNRTPQEEHQSKRVLREEASISMQ 386
            E ++W L   RG +   +H+DE  +L Q+++TP     S +   + AS S Q
Sbjct: 2614 EGEAWSLARDRGGNQYLRHEDEQALLDQNSQTPPPSPFSVQAFNKGASCSAQ 2665

>ROGF1_ARATH (Q93ZY2) Rop guanine nucleotide exchange factor 1 (RopGEF1) (Kinase|
           partner protein-like) (KPP-like)
          Length = 548

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 159 SRMQKRAPDYYNVKRNNIEKVAFICHETKSW 251
           SR  +RAP  Y+VKRN   +   +    K+W
Sbjct: 499 SRSPRRAPPLYSVKRNGTREKGIVGETEKAW 529

>PTPRZ_HUMAN (P23471) Receptor-type tyrosine-protein phosphatase zeta precursor|
           (EC 3.1.3.48) (R-PTP-zeta)
          Length = 2314

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 20/51 (39%), Positives = 31/51 (60%)
 Frame = -1

Query: 327 VFCCLDAGFHHRVASHDGNPLVPRASNSSFHDK*MPLFQYCFFLHCNSQVL 175
           VF  +D  F   ++S+DG PL+P  S++SF  +   LF++   LH  SQ+L
Sbjct: 799 VFPSVDVSFESILSSYDGAPLLP-FSSASFSSE---LFRH---LHTVSQIL 842

>DRD1_XENLA (P42289) D(1A) dopamine receptor|
          Length = 451

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 372 SISMQMLTCCSLFHWVLSC-SPFCAESPSNSLSSPF 476
           S+ M +  CC L  ++L+C  PFC  S + S + PF
Sbjct: 274 SVIMGVFVCCWLPFFILNCIVPFCDPSLTTSGTEPF 309

>NUD13_ARATH (Q52K88) Nudix hydrolase 13, mitochondrial precursor (EC 3.6.1.-)|
           (AtNUDT13)
          Length = 202

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 255 LLEPRGFHHGWQHDDEILRQDNRTPQEEHQSKRVLREE 368
           L+ P+G   GW+ D+ +L   +R   EE   K +LRE+
Sbjct: 60  LVFPKG---GWEDDETVLEAASREAMEEAGVKGILRED 94


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,033,110
Number of Sequences: 219361
Number of extensions: 1210757
Number of successful extensions: 3428
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3427
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)