ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags27m14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PRL_CAPHI (Q28318) Prolactin precursor (PRL) 29 10.0
2ASD4_NEUCR (Q9HEV5) GATA type zinc finger protein Asd4 (Ascus de... 29 10.0

>PRL_CAPHI (Q28318) Prolactin precursor (PRL)|
          Length = 229

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = +3

Query: 21  MVSHWLEHQLSELYSDAESTYRFDRSRTNQILCYCYLSKLRTGITEQLTQKIAYE 185
           MVSH++ +  SE++++ +  Y   +      L  C+ S L T   ++  Q+  +E
Sbjct: 54  MVSHYIHNLSSEMFNEFDKRYAQGKGYITMALNSCHTSSLPTPEDKEQAQQTHHE 108



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>ASD4_NEUCR (Q9HEV5) GATA type zinc finger protein Asd4 (Ascus development|
           protein 4)
          Length = 426

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -1

Query: 425 PLNMSDLKQAHEQVCASISSDSTNMNELVQWNELY 321
           P+N   + Q HEQ+ A+ +S  T ++EL    ELY
Sbjct: 174 PMNGEHMPQTHEQLLAANASLKTRVSELEVIQELY 208


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,779,116
Number of Sequences: 219361
Number of extensions: 1193263
Number of successful extensions: 2172
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2172
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4430660157
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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