ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags27m14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_479469.1| Oryza sativa (japonica cultivar-group), mRNA 192 8e-46
2dbj|AK067432.1| Oryza sativa (japonica cultivar-group) cDNA clon... 192 8e-46
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 119 1e-23
4dbj|AP004300.3| Oryza sativa (japonica cultivar-group) genomic D... 119 1e-23
5gb|BT019198.1| Zea mays clone Contig871.F mRNA sequence 88 4e-14
6gb|AC161032.19| Medicago truncatula clone mth2-21b7, complete se... 68 3e-08
7dbj|AK066938.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 1e-07
8gb|AY112404.1| Zea mays CL69005_1 mRNA sequence 62 2e-06
9gb|AY106770.1| Zea mays PCO089904 mRNA sequence 62 2e-06
10gb|AY109177.1| Zea mays PCO089905 mRNA sequence 58 3e-05
11gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 56 1e-04
12gb|AC148339.1| Oryza sativa (japonica cultivar-group) chromosome... 56 1e-04
13dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
14dbj|AK063910.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
15ref|NM_116481.2| Arabidopsis thaliana ATP binding / ATPase/ nucl... 46 0.12
16gb|AC146592.1| Oryza sativa (japonica cultivar-group) chromosome... 46 0.12
17gb|AY090948.1| Arabidopsis thaliana unknown protein (At4g02480) ... 46 0.12
18emb|AL161494.2|ATCHRIV6 Arabidopsis thaliana DNA chromosome 4, c... 46 0.12
19dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.12
20gb|AF069298.1|T14P8 Arabidopsis thaliana BAC T14P8 46 0.12
21gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 46 0.12
22gb|AC126782.23| Medicago truncatula clone mth2-14p11, complete s... 42 1.9
23emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete g... 42 1.9
24dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, co... 42 1.9
25gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete... 42 1.9
26gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, co... 42 1.9
27gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, compl... 42 1.9
28dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, com... 42 1.9
29dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic... 42 1.9
30emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA2... 42 1.9
31emb|AJ938182.1| Staphylococcus aureus RF122 complete genome 42 1.9
32gb|K00981.1|NEUQA2MUD N.crassa qa-2 gene mutant 158-106, 5' flank 42 1.9
33dbj|AB029459.1| Salix gilgiana SgPG3 mRNA for polygalacturonase,... 42 1.9
34gb|CP000109.1| Thiomicrospira crunogena XCL-2, complete genome 40 7.4
35gb|BT016450.1| Zea mays clone Contig283 mRNA sequence 40 7.4
36gb|AC135431.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.4
37ref|XM_588859.2| PREDICTED: Bos taurus similar to colony stimula... 40 7.4
38gb|AC165174.2| Zea mays clone ZMMBBb-127F19, complete sequence 40 7.4
39gb|AC134303.2| Homo sapiens chromosome 19 clone LLNLR-265H6, com... 40 7.4
40emb|Z81491.1|CED1086 Caenorhabditis elegans Cosmid D1086, comple... 40 7.4
41gb|AC116129.13| Mus musculus chromosome 1, clone RP23-98F11, com... 40 7.4
42emb|X14603.1|NCQA Neurospora crassa qa gene cluster 40 7.4
43emb|AL732581.5| Mouse DNA sequence from clone RP24-262H17 on chr... 40 7.4
44gb|AC011499.5| Homo sapiens chromosome 19 clone CTB-54O9, comple... 40 7.4
45gb|AC108101.2| Homo sapiens chromosome 5 clone RP11-125H10, comp... 40 7.4
46gb|AC092280.2| Homo sapiens chromosome 5 clone CTD-2028M21, comp... 40 7.4
47gb|AC011466.6| Homo sapiens chromosome 19 clone CTC-453G23, comp... 40 7.4
48dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
49gb|AC093320.24| Mus musculus strain C57BL/6J chromosome 1 clone ... 40 7.4
50dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete... 40 7.4
51emb|BX648568.1|HSM808716 Homo sapiens mRNA; cDNA DKFZp779L0366 (... 40 7.4
52gb|AC006229.17|AC006229 Homo sapiens chromosome 4 clone C0011D19... 40 7.4
53gb|AY555142.1| Zea mays BAC clone c573F08, complete sequence 40 7.4
54gb|AY104413.1| Zea mays PCO098503 mRNA sequence 40 7.4
55gb|AY664414.1| Zea mays cultivar B73 locus 9008, complete sequence 40 7.4
56gb|K00977.1|NEUQA2WT N.crassa wild type qa-2 gene, 5' flank 40 7.4
57gb|K00982.1|NEUQA2MUE N.crassa qa-2 gene mutant 158-33, 5' flank 40 7.4
58gb|K00980.1|NEUQA2MUC N.crassa qa-2 gene mutants 162-4 and 162-5... 40 7.4
59gb|K00979.1|NEUQA2MUB N.crassa qa-2 gene mutant 158-6, 5' flank 40 7.4
60gb|K00978.1|NEUQA2MUA N.crassa qa-2 gene mutant 158-99, 5' flank 40 7.4 
>ref|XM_479469.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3673

 Score =  192 bits (97), Expect = 8e-46
 Identities = 222/264 (84%)
 Strand = Plus / Minus

                                                                        
Query: 273  ctacatgaagtagcttagaggtgtcttctttctagatccgccttcaccgtaaagctcgtt 332
            ||||||||||||||||||||  |||||||| || || |||||||| || || || |||||
Sbjct: 3408 ctacatgaagtagcttagagaagtcttcttcctggacccgccttctccatatagatcgtt 3349

                                                                        
Query: 333  ccactgaacaagctcgttcatatttgtcgaatcagatgatatacttgcacatacctgctc 392
            |||||||| ||||||  |||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 3348 ccactgaataagctcagtcatatttctcgaatcagatgttatacttgcacatacctgctc 3289

                                                                        
Query: 393  gtgtgcctgtttgagatcactcatatttagaggacggacatcactgctagaatacttagg 452
             ||||| ||||||| |||  ||||  |||| | ||| |||||||||||||||      ||
Sbjct: 3288 atgtgcatgtttgaaatcgttcattcttagggaacgaacatcactgctagaacgaggggg 3229

                                                                        
Query: 453  aggcaatggtttgttttctgcttctgctaagagtctctccttcttctctttgtcaaggat 512
            ||| |||||||| ||||||||||||||| |   |||||||||||||||| | ||||||||
Sbjct: 3228 aggtaatggtttattttctgcttctgctgatgctctctccttcttctctctttcaaggat 3169

                                    
Query: 513  ttnccttatgggacgatgtgcagc 536
             | ||||||||| | |||||||||
Sbjct: 3168 ctcccttatggggcaatgtgcagc 3145
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>dbj|AK067432.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013100B13, full
            insert sequence
          Length = 3673

 Score =  192 bits (97), Expect = 8e-46
 Identities = 222/264 (84%)
 Strand = Plus / Minus

                                                                        
Query: 273  ctacatgaagtagcttagaggtgtcttctttctagatccgccttcaccgtaaagctcgtt 332
            ||||||||||||||||||||  |||||||| || || |||||||| || || || |||||
Sbjct: 3408 ctacatgaagtagcttagagaagtcttcttcctggacccgccttctccatatagatcgtt 3349

                                                                        
Query: 333  ccactgaacaagctcgttcatatttgtcgaatcagatgatatacttgcacatacctgctc 392
            |||||||| ||||||  |||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 3348 ccactgaataagctcagtcatatttctcgaatcagatgttatacttgcacatacctgctc 3289

                                                                        
Query: 393  gtgtgcctgtttgagatcactcatatttagaggacggacatcactgctagaatacttagg 452
             ||||| ||||||| |||  ||||  |||| | ||| |||||||||||||||      ||
Sbjct: 3288 atgtgcatgtttgaaatcgttcattcttagggaacgaacatcactgctagaacgaggggg 3229

                                                                        
Query: 453  aggcaatggtttgttttctgcttctgctaagagtctctccttcttctctttgtcaaggat 512
            ||| |||||||| ||||||||||||||| |   |||||||||||||||| | ||||||||
Sbjct: 3228 aggtaatggtttattttctgcttctgctgatgctctctccttcttctctctttcaaggat 3169

                                    
Query: 513  ttnccttatgggacgatgtgcagc 536
             | ||||||||| | |||||||||
Sbjct: 3168 ctcccttatggggcaatgtgcagc 3145
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  119 bits (60), Expect = 1e-23
 Identities = 102/116 (87%)
 Strand = Plus / Minus

                                                                            
Query: 273      ctacatgaagtagcttagaggtgtcttctttctagatccgccttcaccgtaaagctcgtt 332
                ||||||||||||||||||||  |||||||| || || |||||||| || || || |||||
Sbjct: 28381445 ctacatgaagtagcttagagaagtcttcttcctggacccgccttctccatatagatcgtt 28381386

                                                                        
Query: 333      ccactgaacaagctcgttcatatttgtcgaatcagatgatatacttgcacatacct 388
                |||||||| ||||||  |||||||| |||||||||||| |||||||||||||||||
Sbjct: 28381385 ccactgaataagctcagtcatatttctcgaatcagatgttatacttgcacatacct 28381330



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 79/97 (81%)
 Strand = Plus / Minus

                                                                            
Query: 384      tacctgctcgtgtgcctgtttgagatcactcatatttagaggacggacatcactgctaga 443
                ||||||||| ||||| ||||||| |||  ||||  |||| | ||| ||||||||||||||
Sbjct: 28381033 tacctgctcatgtgcatgtttgaaatcgttcattcttagggaacgaacatcactgctaga 28380974

                                                     
Query: 444      atacttaggaggcaatggtttgttttctgcttctgct 480
                |      ||||| |||||||| |||||||||||||||
Sbjct: 28380973 acgagggggaggtaatggtttattttctgcttctgct 28380937



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                              
Query: 491      ccttcttctctttgtcaaggatttnccttatgggacgatgtgcagc 536
                ||||||||||| | |||||||| | ||||||||| | |||||||||
Sbjct: 28380645 ccttcttctctctttcaaggatctcccttatggggcaatgtgcagc 28380600
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>dbj|AP004300.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0470D12
          Length = 157248

 Score =  119 bits (60), Expect = 1e-23
 Identities = 102/116 (87%)
 Strand = Plus / Minus

                                                                          
Query: 273    ctacatgaagtagcttagaggtgtcttctttctagatccgccttcaccgtaaagctcgtt 332
              ||||||||||||||||||||  |||||||| || || |||||||| || || || |||||
Sbjct: 107008 ctacatgaagtagcttagagaagtcttcttcctggacccgccttctccatatagatcgtt 106949

                                                                      
Query: 333    ccactgaacaagctcgttcatatttgtcgaatcagatgatatacttgcacatacct 388
              |||||||| ||||||  |||||||| |||||||||||| |||||||||||||||||
Sbjct: 106948 ccactgaataagctcagtcatatttctcgaatcagatgttatacttgcacatacct 106893



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 79/97 (81%)
 Strand = Plus / Minus

                                                                          
Query: 384    tacctgctcgtgtgcctgtttgagatcactcatatttagaggacggacatcactgctaga 443
              ||||||||| ||||| ||||||| |||  ||||  |||| | ||| ||||||||||||||
Sbjct: 106596 tacctgctcatgtgcatgtttgaaatcgttcattcttagggaacgaacatcactgctaga 106537

                                                   
Query: 444    atacttaggaggcaatggtttgttttctgcttctgct 480
              |      ||||| |||||||| |||||||||||||||
Sbjct: 106536 acgagggggaggtaatggtttattttctgcttctgct 106500



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                            
Query: 491    ccttcttctctttgtcaaggatttnccttatgggacgatgtgcagc 536
              ||||||||||| | |||||||| | ||||||||| | |||||||||
Sbjct: 106208 ccttcttctctctttcaaggatctcccttatggggcaatgtgcagc 106163
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>gb|BT019198.1| Zea mays clone Contig871.F mRNA sequence
          Length = 1247

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 73/83 (87%)
 Strand = Plus / Minus

                                                                       
Query: 466 ttttctgcttctgctaagagtctctccttcttctctttgtcaaggatttnccttatggga 525
           ||||||||||| ||||||  |||||||||||||||| | ||||| |||| ||||||||||
Sbjct: 864 ttttctgcttcagctaaggttctctccttcttctctctttcaagaatttcccttatggga 805

                                  
Query: 526 cgatgtgcagcggtaatacacag 548
           |||||||| || || ||||||||
Sbjct: 804 cgatgtgctgcagttatacacag 782



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 116/141 (82%)
 Strand = Plus / Minus

                                                                        
Query: 273  ctacatgaagtagcttagaggtgtcttctttctagatccgccttcaccgtaaagctcgtt 332
            |||||| |||||||| |  |||||||| |  || || |||||||| ||||| || |||||
Sbjct: 1057 ctacataaagtagctcaacggtgtcttgtgcctcgacccgccttctccgtagaggtcgtt 998

                                                                        
Query: 333  ccactgaacaagctcgttcatatttgtcgaatcagatgatatacttgcacatacctgctc 392
            ||| || || ||||| ||||||||| | ||||| ||||||||||| ||||| ||||||||
Sbjct: 997  ccattggacgagctcattcatattttttgaatccgatgatatactcgcacaaacctgctc 938

                                 
Query: 393  gtgtgcctgtttgagatcact 413
             ||||| || |||| ||||||
Sbjct: 937  atgtgcgtgcttgaaatcact 917
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>gb|AC161032.19| Medicago truncatula clone mth2-21b7, complete sequence
          Length = 130355

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 97/118 (82%)
 Strand = Plus / Minus

                                                                         
Query: 273   ctacatgaagtagcttagaggtgtcttctttctagatccgccttcaccgtaaagctcgtt 332
             ||||||||||||||||| || | || | ||||| ||||||||||| || || || || ||
Sbjct: 21918 ctacatgaagtagcttaaagatttcatttttctcgatccgccttctccatagagatcatt 21859

                                                                       
Query: 333   ccactgaacaagctcgttcatatttgtcgaatcagatgatatacttgcacatacctgc 390
             ||| ||    |||||||||||||||||||| || ||||| | ||||||||| ||||||
Sbjct: 21858 ccattgttgtagctcgttcatatttgtcgactctgatgacacacttgcacacacctgc 21801
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>dbj|AK066938.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013093A20, full
            insert sequence
          Length = 2902

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 114/141 (80%)
 Strand = Plus / Minus

                                                                        
Query: 273  ctacatgaagtagcttagaggtgtcttctttctagatccgccttcaccgtaaagctcgtt 332
            ||||||||||||||||||||  ||||| || || ||||| ||||| || ||||| || ||
Sbjct: 2331 ctacatgaagtagcttagagtagtctttttccttgatccaccttctccataaagatcatt 2272

                                                                        
Query: 333  ccactgaacaagctcgttcatatttgtcgaatcagatgatatacttgcacatacctgctc 392
            ||| |||| ||| || ||||| || || ||||| || || | ||||||||| ||||| ||
Sbjct: 2271 ccattgaataagttcattcatgttagttgaatccgaagacacacttgcacagacctgttc 2212

                                 
Query: 393  gtgtgcctgtttgagatcact 413
             || || ||||||| ||||||
Sbjct: 2211 atgagcatgtttgaaatcact 2191
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>gb|AY112404.1| Zea mays CL69005_1 mRNA sequence
          Length = 631

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 112/141 (79%)
 Strand = Plus / Plus

                                                                       
Query: 273 ctacatgaagtagcttagaggtgtcttctttctagatccgccttcaccgtaaagctcgtt 332
           |||||| |||||||| |  |||||||| |  || || |||||||| ||||| || |||||
Sbjct: 261 ctacataaagtagctcaacggtgtcttgtgcctcgacccgccttctccgtagaggtcgtt 320

                                                                       
Query: 333 ccactgaacaagctcgttcatatttgtcgaatcagatgatatacttgcacatacctgctc 392
           ||| || || ||||| ||||||      ||||| ||||||||||| ||||| ||||||||
Sbjct: 321 ccattggacgagctcattcatannnnnngaatccgatgatatactcgcacaaacctgctc 380

                                
Query: 393 gtgtgcctgtttgagatcact 413
            ||||| || |||| ||||||
Sbjct: 381 atgtgcgtgcttgaaatcact 401



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 511 atttnccttatgggacgatgtgcagcggtaatacacag 548
           |||| |||||||||||||||||| || || ||||||||
Sbjct: 499 atttcccttatgggacgatgtgctgcagttatacacag 536
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>gb|AY106770.1| Zea mays PCO089904 mRNA sequence
          Length = 616

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 67/79 (84%)
 Strand = Plus / Minus

                                                                       
Query: 275 acatgaagtagcttagaggtgtcttctttctagatccgccttcaccgtaaagctcgttcc 334
           ||||||||||||| || | | ||||||| || || |||||||||||||| || |||||||
Sbjct: 188 acatgaagtagctcagcgctttcttcttccttgacccgccttcaccgtacaggtcgttcc 129

                              
Query: 335 actgaacaagctcgttcat 353
           | ||||  |||||||||||
Sbjct: 128 attgaaggagctcgttcat 110
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>gb|AY109177.1| Zea mays PCO089905 mRNA sequence
          Length = 1098

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 80/97 (82%)
 Strand = Plus / Minus

                                                                       
Query: 275 acatgaagtagcttagaggtgtcttctttctagatccgccttcaccgtaaagctcgttcc 334
           ||||||||||||| || | | || |||| || || |||||||||||||| || |||||||
Sbjct: 445 acatgaagtagctcagcgctttcctcttcctcgacccgccttcaccgtacaggtcgttcc 386

                                                
Query: 335 actgaacaagctcgttcatatttgtcgaatcagatga 371
           | || | |||||||||||| |||| ||| || |||||
Sbjct: 385 attggagaagctcgttcatgtttgccgagtcggatga 349
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 94/116 (81%)
 Strand = Plus / Plus

                                                                            
Query: 273      ctacatgaagtagcttagaggtgtcttctttctagatccgccttcaccgtaaagctcgtt 332
                ||||||||||||||||||||  ||||| || || ||||| ||||| || ||||| || ||
Sbjct: 12811218 ctacatgaagtagcttagagtagtctttttccttgatccaccttctccataaagatcatt 12811277

                                                                        
Query: 333      ccactgaacaagctcgttcatatttgtcgaatcagatgatatacttgcacatacct 388
                ||| |||| ||| || ||||| || || ||||| || || | ||||||||| ||||
Sbjct: 12811278 ccattgaataagttcattcatgttagttgaatccgaagacacacttgcacagacct 12811333
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>gb|AC148339.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone B1339A06,
             complete sequence
          Length = 132243

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 94/116 (81%)
 Strand = Plus / Plus

                                                                         
Query: 273   ctacatgaagtagcttagaggtgtcttctttctagatccgccttcaccgtaaagctcgtt 332
             ||||||||||||||||||||  ||||| || || ||||| ||||| || ||||| || ||
Sbjct: 49434 ctacatgaagtagcttagagtagtctttttccttgatccaccttctccataaagatcatt 49493

                                                                     
Query: 333   ccactgaacaagctcgttcatatttgtcgaatcagatgatatacttgcacatacct 388
             ||| |||| ||| || ||||| || || ||||| || || | ||||||||| ||||
Sbjct: 49494 ccattgaataagttcattcatgttagttgaatccgaagacacacttgcacagacct 49549
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 94/116 (81%)
 Strand = Plus / Plus

                                                                            
Query: 273      ctacatgaagtagcttagaggtgtcttctttctagatccgccttcaccgtaaagctcgtt 332
                ||||||||||||||||||||  ||||| || || ||||| ||||| || ||||| || ||
Sbjct: 12807981 ctacatgaagtagcttagagtagtctttttccttgatccaccttctccataaagatcatt 12808040

                                                                        
Query: 333      ccactgaacaagctcgttcatatttgtcgaatcagatgatatacttgcacatacct 388
                ||| |||| ||| || ||||| || || ||||| || || | ||||||||| ||||
Sbjct: 12808041 ccattgaataagttcattcatgttagttgaatccgaagacacacttgcacagacct 12808096
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>dbj|AK063910.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-A05, full
           insert sequence
          Length = 1227

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 95/118 (80%)
 Strand = Plus / Minus

                                                                       
Query: 275 acatgaagtagcttagaggtgtcttctttctagatccgccttcaccgtaaagctcgttcc 334
           ||||||||||||| || | | ||||||| || || ||||| || || || || |||||||
Sbjct: 726 acatgaagtagctcagtgctttcttcttcctcgaaccgccctcgccatataggtcgttcc 667

                                                                     
Query: 335 actgaacaagctcgttcatatttgtcgaatcagatgatatacttgcacatacctgctc 392
           | |||| ||| || ||||| ||||  ||||||||||| |  |||||||| ||||||||
Sbjct: 666 attgaagaagttcattcatgtttgctgaatcagatgaaacgcttgcacaaacctgctc 609
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>ref|NM_116481.2| Arabidopsis thaliana ATP binding / ATPase/ nucleoside-triphosphatase/
            nucleotide binding AT4G02480 mRNA, complete cds
          Length = 4287

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                        
Query: 273  ctacatgaagtagcttagaggtgtcttctttctagatccgccttcaccgtaaagctcgtt 332
            ||||||||||||||| |  |  |||||||| || ||||| |||||||| || ||||||||
Sbjct: 3964 ctacatgaagtagctcaacgacgtcttcttcctcgatcctccttcaccatacagctcgtt 3905

               
Query: 333  cca 335
            |||
Sbjct: 3904 cca 3902
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>gb|AC146592.1| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0010P23 PCR product, complete sequence
          Length = 19234

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 92/115 (80%)
 Strand = Plus / Plus

                                                                         
Query: 275   acatgaagtagcttagaggtgtcttctttctagatccgccttcaccgtaaagctcgttcc 334
             ||||||||||||| || | | ||||||| || || ||||| || || || || |||||||
Sbjct: 15428 acatgaagtagctcagtgctttcttcttcctcgaaccgccctcgccatataggtcgttcc 15487

                                                                    
Query: 335   actgaacaagctcgttcatatttgtcgaatcagatgatatacttgcacatacctg 389
             | |||| ||| || ||||| ||||  ||||||||||| |  |||||||| |||||
Sbjct: 15488 attgaagaagttcattcatgtttgctgaatcagatgaaacgcttgcacaaacctg 15542
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>gb|AY090948.1| Arabidopsis thaliana unknown protein (At4g02480) mRNA, complete cds
          Length = 4184

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                        
Query: 273  ctacatgaagtagcttagaggtgtcttctttctagatccgccttcaccgtaaagctcgtt 332
            ||||||||||||||| |  |  |||||||| || ||||| |||||||| || ||||||||
Sbjct: 3926 ctacatgaagtagctcaacgacgtcttcttcctcgatcctccttcaccatacagctcgtt 3867

               
Query: 333  cca 335
            |||
Sbjct: 3866 cca 3864
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>emb|AL161494.2|ATCHRIV6 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 6
          Length = 194892

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 53/63 (84%)
 Strand = Plus / Plus

                                                                          
Query: 273    ctacatgaagtagcttagaggtgtcttctttctagatccgccttcaccgtaaagctcgtt 332
              ||||||||||||||| |  |  |||||||| || ||||| |||||||| || ||||||||
Sbjct: 117732 ctacatgaagtagctcaacgacgtcttcttcctcgatcctccttcaccatacagctcgtt 117791

                 
Query: 333    cca 335
              |||
Sbjct: 117792 cca 117794
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 92/115 (80%)
 Strand = Plus / Plus

                                                                            
Query: 275      acatgaagtagcttagaggtgtcttctttctagatccgccttcaccgtaaagctcgttcc 334
                ||||||||||||| || | | ||||||| || || ||||| || || || || |||||||
Sbjct: 25685218 acatgaagtagctcagtgctttcttcttcctcgaaccgccctcgccatataggtcgttcc 25685277

                                                                       
Query: 335      actgaacaagctcgttcatatttgtcgaatcagatgatatacttgcacatacctg 389
                | |||| ||| || ||||| ||||  ||||||||||| |  |||||||| |||||
Sbjct: 25685278 attgaagaagttcattcatgtttgctgaatcagatgaaacgcttgcacaaacctg 25685332
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>gb|AF069298.1|T14P8 Arabidopsis thaliana BAC T14P8
          Length = 94536

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                         
Query: 273   ctacatgaagtagcttagaggtgtcttctttctagatccgccttcaccgtaaagctcgtt 332
             ||||||||||||||| |  |  |||||||| || ||||| |||||||| || ||||||||
Sbjct: 28882 ctacatgaagtagctcaacgacgtcttcttcctcgatcctccttcaccatacagctcgtt 28823

                
Query: 333   cca 335
             |||
Sbjct: 28822 cca 28820
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 92/115 (80%)
 Strand = Plus / Plus

                                                                            
Query: 275      acatgaagtagcttagaggtgtcttctttctagatccgccttcaccgtaaagctcgttcc 334
                ||||||||||||| || | | ||||||| || || ||||| || || || || |||||||
Sbjct: 26003888 acatgaagtagctcagtgctttcttcttcctcgaaccgccctcgccatataggtcgttcc 26003947

                                                                       
Query: 335      actgaacaagctcgttcatatttgtcgaatcagatgatatacttgcacatacctg 389
                | |||| ||| || ||||| ||||  ||||||||||| |  |||||||| |||||
Sbjct: 26003948 attgaagaagttcattcatgtttgctgaatcagatgaaacgcttgcacaaacctg 26004002
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>gb|AC126782.23| Medicago truncatula clone mth2-14p11, complete sequence
          Length = 135659

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 63/77 (81%)
 Strand = Plus / Plus

                                                                         
Query: 313   ccttcaccgtaaagctcgttccactgaacaagctcgttcatatttgtcgaatcagatgat 372
             |||||||| || || || |||||||| ||||||||  ||||||||   || ||||| || 
Sbjct: 87934 ccttcaccatagagttcattccactgtacaagctctgtcatatttactgattcagaggaa 87993

                              
Query: 373   atacttgcacatacctg 389
             | |||||||||||||||
Sbjct: 87994 acacttgcacatacctg 88010
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>emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete genome
          Length = 2799802

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 43      atcaattaagtgaactgtatt 63
               |||||||||||||||||||||
Sbjct: 1247677 atcaattaagtgaactgtatt 1247697
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>dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome
          Length = 2878529

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 43      atcaattaagtgaactgtatt 63
               |||||||||||||||||||||
Sbjct: 1295599 atcaattaagtgaactgtatt 1295619
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>gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete genome
          Length = 2809422

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 43      atcaattaagtgaactgtatt 63
               |||||||||||||||||||||
Sbjct: 1258663 atcaattaagtgaactgtatt 1258683
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>gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, complete genome
          Length = 2821361

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 43      atcaattaagtgaactgtatt 63
               |||||||||||||||||||||
Sbjct: 1154897 atcaattaagtgaactgtatt 1154917
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>gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, complete genome
          Length = 2872769

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 43      atcaattaagtgaactgtatt 63
               |||||||||||||||||||||
Sbjct: 1234843 atcaattaagtgaactgtatt 1234863
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>dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2
          Length = 2820462

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 43      atcaattaagtgaactgtatt 63
               |||||||||||||||||||||
Sbjct: 1219068 atcaattaagtgaactgtatt 1219088
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>dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome
          Length = 2814816

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 43      atcaattaagtgaactgtatt 63
               |||||||||||||||||||||
Sbjct: 1219270 atcaattaagtgaactgtatt 1219290
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>emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA252, complete genome
          Length = 2902619

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 43      atcaattaagtgaactgtatt 63
               |||||||||||||||||||||
Sbjct: 1261109 atcaattaagtgaactgtatt 1261129
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>emb|AJ938182.1| Staphylococcus aureus RF122 complete genome
          Length = 2742531

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 43      atcaattaagtgaactgtatt 63
               |||||||||||||||||||||
Sbjct: 1186628 atcaattaagtgaactgtatt 1186648
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>gb|K00981.1|NEUQA2MUD N.crassa qa-2 gene mutant 158-106, 5' flank
          Length = 505

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 459 tggtttgttttctgcttctgc 479
           |||||||||||||||||||||
Sbjct: 228 tggtttgttttctgcttctgc 208
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>dbj|AB029459.1| Salix gilgiana SgPG3 mRNA for polygalacturonase, complete cds
          Length = 1397

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 177  gcctatgaatgaagaaaccaa 197
            |||||||||||||||||||||
Sbjct: 1305 gcctatgaatgaagaaaccaa 1285
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>gb|CP000109.1| Thiomicrospira crunogena XCL-2, complete genome
          Length = 2427734

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 350     tcatatttgtcgaatcagat 369
               ||||||||||||||||||||
Sbjct: 1316382 tcatatttgtcgaatcagat 1316363
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>gb|BT016450.1| Zea mays clone Contig283 mRNA sequence
          Length = 1470

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 325 agctcgttccactgaacaag 344
           ||||||||||||||||||||
Sbjct: 736 agctcgttccactgaacaag 755
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>gb|AC135431.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0683B12,
             complete sequence
          Length = 187523

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 457   aatggtttgttttctgcttc 476
             ||||||||||||||||||||
Sbjct: 17583 aatggtttgttttctgcttc 17564
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>ref|XM_588859.2| PREDICTED: Bos taurus similar to colony stimulating factor 3
           receptor isoform a precursor (LOC511511), mRNA
          Length = 2898

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 244 ttctgttctatgtacagact 263
           ||||||||||||||||||||
Sbjct: 872 ttctgttctatgtacagact 853
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>gb|AC165174.2| Zea mays clone ZMMBBb-127F19, complete sequence
          Length = 187659

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 486    tctctccttcttctctttgt 505
              ||||||||||||||||||||
Sbjct: 108601 tctctccttcttctctttgt 108620
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>gb|AC134303.2| Homo sapiens chromosome 19 clone LLNLR-265H6, complete sequence
          Length = 42236

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 142   gaactggcattacagaacaa 161
             ||||||||||||||||||||
Sbjct: 30228 gaactggcattacagaacaa 30209
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>emb|Z81491.1|CED1086 Caenorhabditis elegans Cosmid D1086, complete sequence
          Length = 41270

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 153   acagaacaattgactcaaaa 172
             ||||||||||||||||||||
Sbjct: 31810 acagaacaattgactcaaaa 31791
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>gb|AC116129.13| Mus musculus chromosome 1, clone RP23-98F11, complete sequence
          Length = 216320

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 179   ctatgaatgaagaaaccaac 198
             ||||||||||||||||||||
Sbjct: 58408 ctatgaatgaagaaaccaac 58389
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>emb|X14603.1|NCQA Neurospora crassa qa gene cluster
          Length = 18120

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 460  ggtttgttttctgcttctgc 479
            ||||||||||||||||||||
Sbjct: 2576 ggtttgttttctgcttctgc 2557
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>emb|AL732581.5| Mouse DNA sequence from clone RP24-262H17 on chromosome 4, complete
             sequence
          Length = 137493

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 365   cagatgatatacttgcacat 384
             ||||||||||||||||||||
Sbjct: 91528 cagatgatatacttgcacat 91547
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>gb|AC011499.5| Homo sapiens chromosome 19 clone CTB-54O9, complete sequence
          Length = 199776

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 142   gaactggcattacagaacaa 161
             ||||||||||||||||||||
Sbjct: 15431 gaactggcattacagaacaa 15412
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>gb|AC108101.2| Homo sapiens chromosome 5 clone RP11-125H10, complete sequence
          Length = 144841

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 461   gtttgttttctgcttctgct 480
             ||||||||||||||||||||
Sbjct: 92432 gtttgttttctgcttctgct 92451
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>gb|AC092280.2| Homo sapiens chromosome 5 clone CTD-2028M21, complete sequence
          Length = 101502

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 461   gtttgttttctgcttctgct 480
             ||||||||||||||||||||
Sbjct: 86956 gtttgttttctgcttctgct 86975
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>gb|AC011466.6| Homo sapiens chromosome 19 clone CTC-453G23, complete sequence
          Length = 167272

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 486    tctctccttcttctctttgt 505
              ||||||||||||||||||||
Sbjct: 150478 tctctccttcttctctttgt 150497
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 457     aatggtttgttttctgcttc 476
               ||||||||||||||||||||
Sbjct: 4922998 aatggtttgttttctgcttc 4922979
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>gb|AC093320.24| Mus musculus strain C57BL/6J chromosome 1 clone rp23-45n11, complete
             sequence
          Length = 245536

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 179   ctatgaatgaagaaaccaac 198
             ||||||||||||||||||||
Sbjct: 72587 ctatgaatgaagaaaccaac 72606
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>dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete genome
          Length = 2593857

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 45      caattaagtgaactgtattc 64
               ||||||||||||||||||||
Sbjct: 2063040 caattaagtgaactgtattc 2063021
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>emb|BX648568.1|HSM808716 Homo sapiens mRNA; cDNA DKFZp779L0366 (from clone DKFZp779L0366)
          Length = 4765

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 486  tctctccttcttctctttgt 505
            ||||||||||||||||||||
Sbjct: 2103 tctctccttcttctctttgt 2084
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>gb|AC006229.17|AC006229 Homo sapiens chromosome 4 clone C0011D19, complete sequence
          Length = 186373

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 486    tctctccttcttctctttgt 505
              ||||||||||||||||||||
Sbjct: 158223 tctctccttcttctctttgt 158204
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>gb|AY555142.1| Zea mays BAC clone c573F08, complete sequence
          Length = 181627

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 486    tctctccttcttctctttgt 505
              ||||||||||||||||||||
Sbjct: 179686 tctctccttcttctctttgt 179705



 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 486    tctctccttcttctctttgt 505
              ||||||||||||||||||||
Sbjct: 151495 tctctccttcttctctttgt 151476
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>gb|AY104413.1| Zea mays PCO098503 mRNA sequence
          Length = 1571

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 325 agctcgttccactgaacaag 344
           ||||||||||||||||||||
Sbjct: 884 agctcgttccactgaacaag 903
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>gb|AY664414.1| Zea mays cultivar B73 locus 9008, complete sequence
          Length = 339089

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 486    tctctccttcttctctttgt 505
              ||||||||||||||||||||
Sbjct: 196605 tctctccttcttctctttgt 196586
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>gb|K00977.1|NEUQA2WT N.crassa wild type qa-2 gene, 5' flank
          Length = 559

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 460 ggtttgttttctgcttctgc 479
           ||||||||||||||||||||
Sbjct: 270 ggtttgttttctgcttctgc 251
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>gb|K00982.1|NEUQA2MUE N.crassa qa-2 gene mutant 158-33, 5' flank
          Length = 505

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 460 ggtttgttttctgcttctgc 479
           ||||||||||||||||||||
Sbjct: 227 ggtttgttttctgcttctgc 208
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>gb|K00980.1|NEUQA2MUC N.crassa qa-2 gene mutants 162-4 and 162-5, 5' flank
          Length = 503

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 460 ggtttgttttctgcttctgc 479
           ||||||||||||||||||||
Sbjct: 227 ggtttgttttctgcttctgc 208
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>gb|K00979.1|NEUQA2MUB N.crassa qa-2 gene mutant 158-6, 5' flank
          Length = 573

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 460 ggtttgttttctgcttctgc 479
           ||||||||||||||||||||
Sbjct: 227 ggtttgttttctgcttctgc 208
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>gb|K00978.1|NEUQA2MUA N.crassa qa-2 gene mutant 158-99, 5' flank
          Length = 589

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 460 ggtttgttttctgcttctgc 479
           ||||||||||||||||||||
Sbjct: 227 ggtttgttttctgcttctgc 208


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,791,932
Number of Sequences: 3902068
Number of extensions: 4791932
Number of successful extensions: 89689
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 89225
Number of HSP's gapped (non-prelim): 461
length of query: 548
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 525
effective length of database: 17,143,297,704
effective search space: 9000231294600
effective search space used: 9000231294600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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