ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags28b13 |
|---|---|
| Clone Library Name | barley_pub |
>CREA_GIBFU (O94131) DNA-binding protein creA (Carbon catabolite repressor)| Length = 420 Score = 32.0 bits (71), Expect = 0.61 Identities = 17/47 (36%), Positives = 24/47 (51%) Frame = +2 Query: 50 LTAPPEHTHHNHTHKPGRGQTVHAASARLRQAEHTAEARSHYSKPRS 190 LTAPP H++ NH H P G +H++ L RSH ++ S Sbjct: 215 LTAPPHHSN-NHRHHPYFGHGMHSSRGHLPTLSSYHMGRSHSNEDPS 260
>OPA_DROME (P39768) Pair-rule protein odd-paired| Length = 609 Score = 31.6 bits (70), Expect = 0.80 Identities = 14/35 (40%), Positives = 16/35 (45%) Frame = +2 Query: 47 PLTAPPEHTHHNHTHKPGRGQTVHAASARLRQAEH 151 PL PP H HH H H+ AASA + H Sbjct: 522 PLGPPPSHHHHPHHHQAAPSPGAAAASASMLHHNH 556
>ZAP1_YEAST (P47043) Zinc-responsive transcriptional regulator ZAP1| Length = 880 Score = 30.8 bits (68), Expect = 1.4 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 3/67 (4%) Frame = +2 Query: 23 GSHHNTCTPLTAPPEHTHHN---HTHKPGRGQTVHAASARLRQAEHTAEARSHYSKPRST 193 GS++NT + +H HH H+HKP R V+ ++ + A TA+ ++ + Sbjct: 446 GSNNNTAGATSTDHQHHHHRIQFHSHKPNRNNIVN--NSGISAANTTADLTNNDLNDLIS 503 Query: 194 MRPSYRR 214 SY R Sbjct: 504 REYSYER 510
>ASR_ECOLI (P36560) Acid shock protein precursor| Length = 102 Score = 30.0 bits (66), Expect = 2.3 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 7/61 (11%) Frame = +2 Query: 44 TPLTAPPEHTHHNHTHKPGRGQTVHAA-------SARLRQAEHTAEARSHYSKPRSTMRP 202 T AP + THH HK Q AA A + E A+A ++K S +P Sbjct: 34 TTKAAPAKTTHHKKQHKAAPAQKAQAAKKHHKNTKAEQKAPEQKAQAAKKHAKKHSHQQP 93 Query: 203 S 205 + Sbjct: 94 A 94
>ASR_ECOL6 (Q8CW15) Acid shock protein precursor| Length = 102 Score = 30.0 bits (66), Expect = 2.3 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 7/61 (11%) Frame = +2 Query: 44 TPLTAPPEHTHHNHTHKPGRGQTVHA-------ASARLRQAEHTAEARSHYSKPRSTMRP 202 T AP + THH HK Q A A A + E A+A ++K S +P Sbjct: 34 TTKAAPAKTTHHKKQHKAAPAQKAQAAKKHHKNAKAEQKAPEQKAQAAKKHAKKHSHQQP 93 Query: 203 S 205 + Sbjct: 94 A 94
>ASR_ECO57 (Q8X783) Acid shock protein precursor| Length = 102 Score = 30.0 bits (66), Expect = 2.3 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 7/61 (11%) Frame = +2 Query: 44 TPLTAPPEHTHHNHTHKPGRGQTVHAA-------SARLRQAEHTAEARSHYSKPRSTMRP 202 T AP + THH HK Q AA A + E A+A ++K S +P Sbjct: 34 TTKAAPAKTTHHKKQHKAAPAQKAQAAKKHHKNTKAEQKAPEQKAQAAKKHAKKHSHQQP 93 Query: 203 S 205 + Sbjct: 94 A 94
>CAC1A_RABIT (P27884) Voltage-dependent P/Q-type calcium channel alpha-1A subunit| (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide isoform 4) (Brain calcium channel I) (BI) Length = 2424 Score = 29.6 bits (65), Expect = 3.0 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%) Frame = +2 Query: 68 HTHHNHTHKPGR--GQTVHAASARLRQAEHTAEAR 166 H HH+H H PGR G+ SAR R+ A R Sbjct: 2219 HHHHHHHHHPGRGPGRVSPGVSARRRRRGPVARVR 2253
>QIN_AVIS3 (P56260) Transforming protein Qin (Oncogene Qin)| Length = 387 Score = 29.6 bits (65), Expect = 3.0 Identities = 16/44 (36%), Positives = 20/44 (45%) Frame = +2 Query: 26 SHHNTCTPLTAPPEHTHHNHTHKPGRGQTVHAASARLRQAEHTA 157 SHHN+ P H HH+H H P Q A+A + E A Sbjct: 37 SHHNS-----HHPHHHHHHHHHHPPPPQQPQRAAAAEEEDEEKA 75
>FOXGB_CHICK (Q90964) Forkhead box protein G1B (Forkhead-related protein FKHL1)| (Transcription factor BF-1) (Brain factor 1) (BF1) (CBF-1) (Proto-oncogene C-QIN) (N-62-5) (CEQ 3-1) Length = 451 Score = 29.6 bits (65), Expect = 3.0 Identities = 16/44 (36%), Positives = 20/44 (45%) Frame = +2 Query: 26 SHHNTCTPLTAPPEHTHHNHTHKPGRGQTVHAASARLRQAEHTA 157 SHHN+ P H HH+H H P Q A+A + E A Sbjct: 37 SHHNS-----HHPHHHHHHHHHHPPPPQQPQRAAAAEEEDEEKA 75
>GA2L1_MOUSE (Q8JZP9) GAS2-like protein 1 (Growth arrest-specific 2-like 1)| Length = 678 Score = 29.3 bits (64), Expect = 3.9 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%) Frame = -3 Query: 382 PCLHRGSLXPRVVRQDQADQGEPDRRVGAEGEPV--SSPARRSENTTR 245 P R PR +D+ D+G P G G + SSPARR+ + +R Sbjct: 392 PASPRRPTAPRSQSRDRLDRGRPRVAPGGRGAQLSTSSPARRTRSQSR 439
>FRAS1_MOUSE (Q80T14) Extracellular matrix protein FRAS1 precursor| Length = 4010 Score = 29.3 bits (64), Expect = 3.9 Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 5/33 (15%) Frame = -3 Query: 184 GFGIMRASLCCVLCLSQARTC-----CVDCLPP 101 G G +A C+ C Q TC C CLPP Sbjct: 454 GLGFYQAGSLCLACQPQCSTCTNGLECSSCLPP 486
>RHO_MICLU (P52154) Transcription termination factor rho (EC 3.6.1.-)| (ATP-dependent helicase rho) Length = 690 Score = 29.3 bits (64), Expect = 3.9 Identities = 17/49 (34%), Positives = 22/49 (44%) Frame = -3 Query: 391 DQRPCLHRGSLXPRVVRQDQADQGEPDRRVGAEGEPVSSPARRSENTTR 245 + RP R S R D A QG+ R GA+GE + RR + R Sbjct: 149 EDRPQSERRSRGRRRAGDDDAQQGQDRRSDGAQGEDGADADRRGDREDR 197
>RT18B_HUMAN (Q9Y676) 28S ribosomal protein S18b, mitochondrial precursor| (MRP-S18-b) (Mrps18b) (MRP-S18-2) Length = 258 Score = 29.3 bits (64), Expect = 3.9 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%) Frame = +3 Query: 201 QATDEALLL---PSLLAQRVVFSERRAGELTGSPSAPTRRSGSPWSAW 335 +A D LL+ P + + + FS G ++ +P APT SG PW W Sbjct: 156 KARDHGLLIYHIPQVEPRDLDFSTSH-GAVSATPPAPTLVSGDPWYPW 202
>EDN2_HUMAN (P20800) Endothelin-2 precursor (ET-2) (Preproendothelin-2) (PPET2)| Length = 178 Score = 29.3 bits (64), Expect = 3.9 Identities = 19/59 (32%), Positives = 25/59 (42%) Frame = +3 Query: 213 EALLLPSLLAQRVVFSERRAGELTGSPSAPTRRSGSPWSAWS*RTTRG*REPRCRHGRW 389 EA +PS + VF + G TG R + S ++ R REPR H RW Sbjct: 117 EAGAVPSRKSPADVFQTGKTGATTGELLQRLRDISTVKSLFAKRQQEAMREPRSTHSRW 175
>CLIC1_MOUSE (Q9Z1Q5) Chloride intracellular channel protein 1 (Nuclear chloride| ion channel 27) (NCC27) Length = 240 Score = 29.3 bits (64), Expect = 3.9 Identities = 11/36 (30%), Positives = 17/36 (47%) Frame = -1 Query: 420 FKXWKVPETXTSVHAYTEALFXRESFVKTKPTKENL 313 ++ + +PE VH Y + RE F T P E + Sbjct: 193 YRGFTIPEAFRGVHRYLSNAYAREEFASTCPDDEEI 228
>CLIC1_HUMAN (O00299) Chloride intracellular channel protein 1 (Nuclear chloride| ion channel 27) (NCC27) (Chloride channel ABP) (Regulatory nuclear chloride ion channel protein) (hRNCC) Length = 240 Score = 29.3 bits (64), Expect = 3.9 Identities = 11/36 (30%), Positives = 17/36 (47%) Frame = -1 Query: 420 FKXWKVPETXTSVHAYTEALFXRESFVKTKPTKENL 313 ++ + +PE VH Y + RE F T P E + Sbjct: 193 YRGFTIPEAFRGVHRYLSNAYAREEFASTCPDDEEI 228
>HYCG_ECOLI (P16433) Formate hydrogenlyase subunit 7 (FHL subunit 7)| (Hydrogenase-3 component G) Length = 255 Score = 28.9 bits (63), Expect = 5.2 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%) Frame = -1 Query: 156 AVCSACRKRALAAWTVCPLPGLCV*LW-CVCSGGAVKGVHVLW 31 AV A R AL AW P P +C+ C SGG ++ +W Sbjct: 87 AVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVW 129
>SEN2_YEAST (P16658) tRNA-splicing endonuclease subunit SEN2 (EC 3.1.27.9)| (tRNA-intron endonuclease SEN2) (Splicing endonuclease protein 2) Length = 377 Score = 28.9 bits (63), Expect = 5.2 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%) Frame = +1 Query: 229 HHYWHNGWCSRSGGR--GSLRVHLRRPPGDQVLLGRLGLDERLAXE 360 HHY +GWC RSG + ++ R PP +GLD ++ + Sbjct: 267 HHYRSHGWCVRSGIKFGCDYLLYKRGPPFQHAEFCVMGLDHDVSKD 312
>MTP1_ARATH (Q9ZT63) Metal tolerance protein 1 (AtMTP1) (Zinc transporter| ZAT-1) (ZAT1p) [Contains: Metal tolerance protein 1 short form] Length = 398 Score = 28.9 bits (63), Expect = 5.2 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 2/34 (5%) Frame = +2 Query: 29 HHNTCTPLTAPPEHTHHNHT--HKPGRGQTVHAA 124 HHN +T H HH+H H G G+ H A Sbjct: 198 HHNHSHGVTVTTHHHHHDHEHGHSHGHGEDKHHA 231
>IST2_YEAST (P38250) Increased sodium tolerance protein 2| Length = 946 Score = 28.9 bits (63), Expect = 5.2 Identities = 14/54 (25%), Positives = 24/54 (44%) Frame = +2 Query: 26 SHHNTCTPLTAPPEHTHHNHTHKPGRGQTVHAASARLRQAEHTAEARSHYSKPR 187 S++NT T T HH+H H R V + + E ++ + + KP+ Sbjct: 880 SNNNTTTTTTTDATQPHHHHHHHRHRDAGVKNVTNNSKTTESSSSSSAAKEKPK 933
>VE1_BPV1 (P03116) Replication protein E1| Length = 605 Score = 28.5 bits (62), Expect = 6.7 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Frame = +1 Query: 34 QHMHTLDCTTRT-HTPQSHTQARQGADSPRSKCALATGRAHSRGSLALFQTQ 186 Q H DC T H ++ TQA +++C LATG + L F Q Sbjct: 354 QAKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEGSWKSILTFFNYQ 405
>GSH2_HUMAN (Q9BZM3) Homeobox protein GSH-2| Length = 304 Score = 28.5 bits (62), Expect = 6.7 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 1/56 (1%) Frame = +2 Query: 8 PXYDKGSHHNTCTPLTAPPEHTHHNH-THKPGRGQTVHAASARLRQAEHTAEARSH 172 P + HH+ PP+H HH+H +PG AA+A A + H Sbjct: 120 PRVNHAHHHHH------PPQHHHHHHQPQQPGSAAAAAAAAAAAAAAAALGHPQHH 169
>YJZ4_YEAST (P47095) Hypothetical protein YJR024c| Length = 244 Score = 28.5 bits (62), Expect = 6.7 Identities = 16/54 (29%), Positives = 26/54 (48%) Frame = +1 Query: 226 CHHYWHNGWCSRSGGRGSLRVHLRRPPGDQVLLGRLGLDERLAXEESLGVGMDA 387 C ++HN WC+ +GG + ++ P + L G+ + E L V MDA Sbjct: 24 CKQFFHNNWCTGTGG----GISIKDPNTNYYYLAPSGVQKEKMIPEDLFV-MDA 72
>VE1_BPV2 (P11298) Replication protein E1 (EC 3.6.1.-) (ATP-dependent| helicase E1) Length = 604 Score = 28.5 bits (62), Expect = 6.7 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Frame = +1 Query: 34 QHMHTLDCTTRT-HTPQSHTQARQGADSPRSKCALATGRAHSRGSLALFQTQ 186 Q H DC T H ++ TQA +++C LATG + L F Q Sbjct: 353 QAKHVKDCATMVRHYLRAETQALSMPAYIKTRCKLATGEGSWKSILTFFNYQ 404
>FRAS1_HUMAN (Q86XX4) Extracellular matrix protein FRAS1 precursor| Length = 4007 Score = 28.5 bits (62), Expect = 6.7 Identities = 13/39 (33%), Positives = 15/39 (38%), Gaps = 5/39 (12%) Frame = -3 Query: 202 WAHGRSGFGIMRASLCCVLCLSQARTC-----CVDCLPP 101 W G G +A C+ C Q TC C C PP Sbjct: 449 WCVHSCGLGFYQAGSLCLACQPQCSTCTSGLECSSCQPP 487
>SI1L2_MOUSE (Q80TE4) Signal-induced proliferation-associated 1-like protein 2| Length = 1722 Score = 28.1 bits (61), Expect = 8.8 Identities = 14/48 (29%), Positives = 22/48 (45%) Frame = +1 Query: 82 SHTQARQGADSPRSKCALATGRAHSRGSLALFQTQIDHAPKLQTRPYY 225 SH+ Q + SP + C+ +TG S + AP T+PY+ Sbjct: 1341 SHSSGSQHSGSPSAHCSKSTGSLDSSKGYIVTHGGGQQAPGAVTKPYH 1388
>GAK_MOUSE (Q99KY4) Cyclin G-associated kinase (EC 2.7.11.1)| Length = 1305 Score = 28.1 bits (61), Expect = 8.8 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Frame = +3 Query: 177 PNPDRPCAQATDEALLLPSLLAQ-RVVFSERRAGELTGSPSAPTRRSGSPWSA 332 PNP + +Q D L L + + + + AG G+P APT++S SPW A Sbjct: 1069 PNPSQTKSQNLDPFADLSDLSSSLQGLPAGLPAGGFVGAP-APTQKSNSPWQA 1120
>T7L1A_BRARE (Q9YHE8) Transcription factor 7-like 1-A (HMG box transcription| factor 3-A) (TCF-3-A) (TCF-3) (zTcf-3) (Protein headless) Length = 560 Score = 28.1 bits (61), Expect = 8.8 Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 3/69 (4%) Frame = +2 Query: 8 PXYDKGSHHNTCTPL---TAPPEHTHHNHTHKPGRGQTVHAASARLRQAEHTAEARSHYS 178 P +H PL T P HHNH H P G++ + S + S Sbjct: 464 PAAPAATHSEQAQPLSLTTKPEGRAHHNHPHFPLPGKSSGSGSGSSMALHSLSRPIPFTS 523 Query: 179 KPRSTMRPS 205 P S + P+ Sbjct: 524 LPPSLLGPN 532
>CLIC1_RABIT (Q95MF9) Chloride intracellular channel protein 1| Length = 240 Score = 28.1 bits (61), Expect = 8.8 Identities = 11/35 (31%), Positives = 16/35 (45%) Frame = -1 Query: 417 KXWKVPETXTSVHAYTEALFXRESFVKTKPTKENL 313 + + +PE VH Y + RE F T P E + Sbjct: 194 RGFTIPEVFRGVHRYLSNAYAREEFASTCPDDEEI 228
>RHAD_YERPS (Q66FF5) Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)| Length = 274 Score = 28.1 bits (61), Expect = 8.8 Identities = 10/17 (58%), Positives = 12/17 (70%) Frame = +1 Query: 238 WHNGWCSRSGGRGSLRV 288 WH GW R+GG SLR+ Sbjct: 21 WHKGWDERNGGNISLRL 37
>RHAD_YERPE (Q8ZJ03) Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)| Length = 274 Score = 28.1 bits (61), Expect = 8.8 Identities = 10/17 (58%), Positives = 12/17 (70%) Frame = +1 Query: 238 WHNGWCSRSGGRGSLRV 288 WH GW R+GG SLR+ Sbjct: 21 WHKGWDERNGGNISLRL 37 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,774,460 Number of Sequences: 219361 Number of extensions: 1053425 Number of successful extensions: 4177 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 3761 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4091 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2286875994 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
