ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags28b12 |
|---|---|
| Clone Library Name | barley_pub |
>TMED9_MOUSE (Q99KF1) Transmembrane emp24 domain-containing protein 9 precursor| (Glycoprotein 25L2) Length = 214 Score = 42.7 bits (99), Expect = 5e-04 Identities = 21/48 (43%), Positives = 29/48 (60%) Frame = -3 Query: 493 REEXMQNINRQTNSRMGWLSFLSLGICLSVAGLQLWHLKTFFERKKLL 350 REE + + TN R+ W S L I L++ Q+ HLK+FFE KKL+ Sbjct: 167 REERFRQTSESTNQRVLWWSVLQTLILLAIGVCQMRHLKSFFEAKKLV 214
>TMED9_HUMAN (Q9BVK6) Transmembrane emp24 domain-containing protein 9 precursor| (Glycoprotein 25L2) Length = 214 Score = 41.6 bits (96), Expect = 0.001 Identities = 20/48 (41%), Positives = 29/48 (60%) Frame = -3 Query: 493 REEXMQNINRQTNSRMGWLSFLSLGICLSVAGLQLWHLKTFFERKKLL 350 REE + + TN R+ W S L I +++ Q+ HLK+FFE KKL+ Sbjct: 167 REERFRQTSESTNQRVLWWSILQTLILVAIGVWQMRHLKSFFEAKKLV 214
>TMED9_BOVIN (Q3T133) Transmembrane emp24 domain-containing protein 9 precursor| Length = 235 Score = 41.6 bits (96), Expect = 0.001 Identities = 20/48 (41%), Positives = 29/48 (60%) Frame = -3 Query: 493 REEXMQNINRQTNSRMGWLSFLSLGICLSVAGLQLWHLKTFFERKKLL 350 REE + + TN R+ W S L I +++ Q+ HLK+FFE KKL+ Sbjct: 188 REERFRQTSESTNQRVLWWSILQTLILVAIGVWQMRHLKSFFEAKKLV 235
>TMEDA_RAT (Q63584) Transmembrane emp24 domain-containing protein 10 precursor| (Transmembrane protein Tmp21) (21 kDa transmembrane trafficking protein) Length = 219 Score = 40.0 bits (92), Expect = 0.004 Identities = 18/48 (37%), Positives = 32/48 (66%) Frame = -3 Query: 493 REEXMQNINRQTNSRMGWLSFLSLGICLSVAGLQLWHLKTFFERKKLL 350 REE M++ N TN+R+ + S S+ + +A Q+++L+ FF+ KKL+ Sbjct: 171 REEEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFFKAKKLI 218
>TMEDA_RABIT (Q28735) Transmembrane emp24 domain-containing protein 10 precursor| (Transmembrane protein Tmp21) (21 kDa transmembrane trafficking protein) (Integral membrane protein p23) Length = 219 Score = 40.0 bits (92), Expect = 0.004 Identities = 18/48 (37%), Positives = 32/48 (66%) Frame = -3 Query: 493 REEXMQNINRQTNSRMGWLSFLSLGICLSVAGLQLWHLKTFFERKKLL 350 REE M++ N TN+R+ + S S+ + +A Q+++L+ FF+ KKL+ Sbjct: 171 REEEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFFKAKKLI 218
>TMEDA_PONPY (Q5RE32) Transmembrane emp24 domain-containing protein 10 precursor| (Transmembrane protein Tmp21) (21 kDa transmembrane trafficking protein) Length = 219 Score = 40.0 bits (92), Expect = 0.004 Identities = 18/48 (37%), Positives = 32/48 (66%) Frame = -3 Query: 493 REEXMQNINRQTNSRMGWLSFLSLGICLSVAGLQLWHLKTFFERKKLL 350 REE M++ N TN+R+ + S S+ + +A Q+++L+ FF+ KKL+ Sbjct: 171 REEEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFFKAKKLI 218
>TMEDA_MOUSE (Q9D1D4) Transmembrane emp24 domain-containing protein 10 precursor| (Transmembrane protein Tmp21) (21 kDa transmembrane trafficking protein) Length = 219 Score = 40.0 bits (92), Expect = 0.004 Identities = 18/48 (37%), Positives = 32/48 (66%) Frame = -3 Query: 493 REEXMQNINRQTNSRMGWLSFLSLGICLSVAGLQLWHLKTFFERKKLL 350 REE M++ N TN+R+ + S S+ + +A Q+++L+ FF+ KKL+ Sbjct: 171 REEEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFFKAKKLI 218
>TMEDA_HUMAN (P49755) Transmembrane emp24 domain-containing protein 10 precursor| (Transmembrane protein Tmp21) (21 kDa transmembrane trafficking protein) (p24delta) (S31III125) (S31I125) (Tmp-21-I) Length = 219 Score = 40.0 bits (92), Expect = 0.004 Identities = 18/48 (37%), Positives = 32/48 (66%) Frame = -3 Query: 493 REEXMQNINRQTNSRMGWLSFLSLGICLSVAGLQLWHLKTFFERKKLL 350 REE M++ N TN+R+ + S S+ + +A Q+++L+ FF+ KKL+ Sbjct: 171 REEEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFFKAKKLI 218
>TMEDA_BOVIN (Q5E971) Transmembrane emp24 domain-containing protein 10 precursor| (Transmembrane protein Tmp21) (21 kDa transmembrane trafficking protein) Length = 219 Score = 40.0 bits (92), Expect = 0.004 Identities = 18/48 (37%), Positives = 32/48 (66%) Frame = -3 Query: 493 REEXMQNINRQTNSRMGWLSFLSLGICLSVAGLQLWHLKTFFERKKLL 350 REE M++ N TN+R+ + S S+ + +A Q+++L+ FF+ KKL+ Sbjct: 171 REEEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFFKAKKLI 218
>TMEDA_FUGRU (Q90515) Transmembrane emp24 domain-containing protein 10 precursor| (Transmembrane protein Tmp21) (S31III125) Length = 213 Score = 40.0 bits (92), Expect = 0.004 Identities = 18/48 (37%), Positives = 32/48 (66%) Frame = -3 Query: 493 REEXMQNINRQTNSRMGWLSFLSLGICLSVAGLQLWHLKTFFERKKLL 350 REE M++ N TN+R+ + S S+ + +A Q+++L+ FF+ KKL+ Sbjct: 165 REEEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFFKAKKLI 212
>TMEDA_MESAU (O35587) Transmembrane protein Tmp21 precursor (21 kDa| transmembrane trafficking protein) (Integral membrane protein p23) Length = 219 Score = 39.7 bits (91), Expect = 0.005 Identities = 18/48 (37%), Positives = 32/48 (66%) Frame = -3 Query: 493 REEXMQNINRQTNSRMGWLSFLSLGICLSVAGLQLWHLKTFFERKKLL 350 REE M++ N TN+R+ + S S+ + +A Q+++L+ FF+ KKL+ Sbjct: 171 REEEMRDTNESTNTRVLYFSIFSMLCLIGLATWQVFYLRRFFKAKKLI 218
>EMP24_YEAST (P32803) Endosomal P24B protein precursor (24 kDa endomembrane| protein) (Basic 24 kDa late endocytic intermediate component) Length = 203 Score = 36.6 bits (83), Expect = 0.039 Identities = 16/48 (33%), Positives = 27/48 (56%) Frame = -3 Query: 493 REEXMQNINRQTNSRMGWLSFLSLGICLSVAGLQLWHLKTFFERKKLL 350 RE +N TN R+ W S LG+ ++ + Q+++L+ FFE L+ Sbjct: 156 RERTHRNTAESTNDRVKWWSIFQLGVVIANSLFQIYYLRRFFEVTSLV 203
>TMED4_MOUSE (Q8R1V4) Transmembrane emp24 domain-containing protein 4 precursor| (p26) Length = 227 Score = 36.6 bits (83), Expect = 0.039 Identities = 19/48 (39%), Positives = 26/48 (54%) Frame = -3 Query: 493 REEXMQNINRQTNSRMGWLSFLSLGICLSVAGLQLWHLKTFFERKKLL 350 REE + + TN R+ W S I + Q+ HLK+FFE KKL+ Sbjct: 180 REERFRLTSESTNQRVLWWSIAQTVILILTGIWQMRHLKSFFEAKKLV 227
>TMED4_HUMAN (Q7Z7H5) Transmembrane emp24 domain-containing protein 4 precursor| Length = 227 Score = 36.6 bits (83), Expect = 0.039 Identities = 19/48 (39%), Positives = 26/48 (54%) Frame = -3 Query: 493 REEXMQNINRQTNSRMGWLSFLSLGICLSVAGLQLWHLKTFFERKKLL 350 REE + + TN R+ W S I + Q+ HLK+FFE KKL+ Sbjct: 180 REERFRLTSESTNQRVLWWSIAQTVILILTGIWQMRHLKSFFEAKKLV 227
>G25L_MOUSE (Q9D2R4) Glycoprotein 25L precursor (GP25L)| Length = 215 Score = 36.6 bits (83), Expect = 0.039 Identities = 19/48 (39%), Positives = 27/48 (56%) Frame = -3 Query: 493 REEXMQNINRQTNSRMGWLSFLSLGICLSVAGLQLWHLKTFFERKKLL 350 REE + + TN + W +F + I +SV Q+ HLK FF KKL+ Sbjct: 168 REENFRITSEDTNRNVLWWAFAQILIFISVGIFQMKHLKDFFIAKKLV 215
>G25L_CANFA (P27869) Glycoprotein 25L precursor (GP25L)| Length = 215 Score = 35.0 bits (79), Expect = 0.11 Identities = 18/48 (37%), Positives = 27/48 (56%) Frame = -3 Query: 493 REEXMQNINRQTNSRMGWLSFLSLGICLSVAGLQLWHLKTFFERKKLL 350 REE + I+ TNS + W +F I +++ Q+ LK FF KKL+ Sbjct: 168 REENFRMISEDTNSNVLWWAFAQTLIFIAIGIFQMKSLKNFFIAKKLV 215
>ERP6_YEAST (P53198) Protein ERP6 precursor| Length = 216 Score = 32.3 bits (72), Expect = 0.73 Identities = 14/48 (29%), Positives = 28/48 (58%) Frame = -3 Query: 493 REEXMQNINRQTNSRMGWLSFLSLGICLSVAGLQLWHLKTFFERKKLL 350 REE ++I+ NSR W + + + + + Q+ L++FF ++K+L Sbjct: 169 REESFRDISESVNSRAMWWTVTQVTLLIIICVWQMKSLRSFFVKQKVL 216
>TMED2_CRIGR (P49020) Transmembrane emp24 domain trafficking protein 2 precursor| (COPI-coated vesicle membrane protein p24) (Fragment) Length = 196 Score = 31.2 bits (69), Expect = 1.6 Identities = 16/48 (33%), Positives = 29/48 (60%) Frame = -3 Query: 493 REEXMQNINRQTNSRMGWLSFLSLGICLSVAGLQLWHLKTFFERKKLL 350 RE + IN TNSR+ SF + +++ Q+++LK FFE ++++ Sbjct: 149 RERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRFFEVRRVV 196
>TMED2_RAT (Q63524) Transmembrane emp24 domain trafficking protein 2 precursor| (Membrane protein p24A) (RNP21.4) Length = 201 Score = 31.2 bits (69), Expect = 1.6 Identities = 16/48 (33%), Positives = 29/48 (60%) Frame = -3 Query: 493 REEXMQNINRQTNSRMGWLSFLSLGICLSVAGLQLWHLKTFFERKKLL 350 RE + IN TNSR+ SF + +++ Q+++LK FFE ++++ Sbjct: 154 RERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRFFEVRRVV 201
>TMED2_MOUSE (Q9R0Q3) Transmembrane emp24 domain trafficking protein 2 precursor| (Membrane protein p24A) (Sid 394) Length = 201 Score = 31.2 bits (69), Expect = 1.6 Identities = 16/48 (33%), Positives = 29/48 (60%) Frame = -3 Query: 493 REEXMQNINRQTNSRMGWLSFLSLGICLSVAGLQLWHLKTFFERKKLL 350 RE + IN TNSR+ SF + +++ Q+++LK FFE ++++ Sbjct: 154 RERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRFFEVRRVV 201
>TMED2_HUMAN (Q15363) Transmembrane emp24 domain trafficking protein 2 precursor| (Membrane protein p24A) Length = 201 Score = 31.2 bits (69), Expect = 1.6 Identities = 16/48 (33%), Positives = 29/48 (60%) Frame = -3 Query: 493 REEXMQNINRQTNSRMGWLSFLSLGICLSVAGLQLWHLKTFFERKKLL 350 RE + IN TNSR+ SF + +++ Q+++LK FFE ++++ Sbjct: 154 RERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRFFEVRRVV 201
>SEL9_CAEEL (O17528) Suppressor/enhancer of lin-12 protein 9 precursor| Length = 203 Score = 30.8 bits (68), Expect = 2.1 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%) Frame = -3 Query: 493 REEXMQNINRQTNSR-MGWLSFLSLGICLSVAGLQLWHLKTFFERKKLL 350 RE +NIN TNSR + W +F + + G Q+++LK FFE + ++ Sbjct: 156 RERVHRNINENTNSRVVMWAAFEAFVLVGMTVG-QIFYLKRFFEVRTMV 203
>YID7_YEAST (P40534) Hypothetical 75.0 kDa protein in NOT3-CKA1 intergenic| region Length = 656 Score = 30.0 bits (66), Expect = 3.6 Identities = 19/55 (34%), Positives = 29/55 (52%) Frame = +1 Query: 1 TNSKKNKNPNRGSSIWLAKLPTLAKRNSAHNSSNDVALLSSTKTKHVTSYEIIKK 165 T+S + N R S+ WL KRN N N++++LS T+ +S IIK+ Sbjct: 243 TSSTLSLNFLRNSTDWLQ-----LKRNFTANLQNEISILSGGSTEVTSSTSIIKR 292
>DRE2A_ARATH (O82132) Dehydration-responsive element-binding protein 2A (DREB2A| protein) Length = 335 Score = 29.6 bits (65), Expect = 4.7 Identities = 11/27 (40%), Positives = 17/27 (62%) Frame = +1 Query: 19 KNPNRGSSIWLAKLPTLAKRNSAHNSS 99 + PNRGS +WL PT + SA++ + Sbjct: 95 REPNRGSRLWLGTFPTAQEAASAYDEA 121
>ERP5_YEAST (P38819) Protein ERP5 precursor| Length = 212 Score = 28.9 bits (63), Expect = 8.1 Identities = 15/48 (31%), Positives = 25/48 (52%) Frame = -3 Query: 493 REEXMQNINRQTNSRMGWLSFLSLGICLSVAGLQLWHLKTFFERKKLL 350 +E +N + NS++ S L I L QL +LK FF ++K++ Sbjct: 165 KEAEFRNQSESANSKIMTWSVFQLLILLGTCAFQLRYLKNFFVKQKVV 212
>YE98_SCHPO (O13770) Hypothetical protein C17A5.08 precursor| Length = 210 Score = 28.9 bits (63), Expect = 8.1 Identities = 13/44 (29%), Positives = 26/44 (59%) Frame = -3 Query: 493 REEXMQNINRQTNSRMGWLSFLSLGICLSVAGLQLWHLKTFFER 362 RE + + T +R+ W S + ++++ LQ++ +KTFF+R Sbjct: 161 REHRNYSTVKSTQARIFWFSLAESIMVVALSALQVFIVKTFFKR 204 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,065,663 Number of Sequences: 219361 Number of extensions: 1273197 Number of successful extensions: 3691 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 3618 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3691 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3581144924 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
