ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags28b10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF262984.1|AF262984 Triticum aestivum cyclophilin A-3 (CyP3) ... 186 3e-44
2gb|AY456124.1| Triticum aestivum cyclophilin A (CYP18-3) gene, p... 186 3e-44
3gb|AF262983.1|AF262983 Triticum aestivum cyclophilin A-2 (CyP2) ... 182 4e-43
4gb|AY456122.1| Triticum aestivum cyclophilin A (CYP18-2) gene, c... 182 4e-43
5gb|AF262982.1|AF262982 Triticum aestivum cyclophilin A-1 (CyP1) ... 178 7e-42
6gb|AY456123.1| Triticum aestivum cyclophilin A (CYP18-1) gene, p... 178 7e-42
7gb|AF384147.1|AF384147 Triticum aestivum cyclophilin mRNA, parti... 163 4e-37
8ref|XM_463914.1| Oryza sativa (japonica cultivar-group), mRNA 111 1e-21
9ref|XM_506694.1| PREDICTED Oryza sativa (japonica cultivar-group... 111 1e-21
10gb|AF263543.1| Oryza sativa clone 15CAC microsatellite sequence 111 1e-21
11gb|DQ480736.1| Oryza sativa (indica cultivar-group) cyclophilinA... 111 1e-21
12dbj|AK061894.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 1e-21
13dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 111 1e-21
14dbj|AP004078.3| Oryza sativa (japonica cultivar-group) genomic D... 111 1e-21
15dbj|AP005851.2| Oryza sativa (japonica cultivar-group) genomic D... 111 1e-21
16dbj|AK098919.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 1e-21
17gb|L29469.1|RICCYP2G Oryza sativa cyclophilin 2 (Cyp2) gene, com... 111 1e-21
18dbj|D29701.1|RICYK13 Oryza sativa mRNA, partial homologous to cy... 101 1e-18
19gb|L29470.1|RICCYP2R Oryza sativa cyclophilin 2 (Cyp2) mRNA, com... 96 8e-17
20gb|BT016413.1| Zea mays clone Contig246 mRNA sequence 82 1e-12
21gb|BT017873.1| Zea mays clone EL01N0513A10.c mRNA sequence 82 1e-12
22gb|AY109901.1| Zea mays CL2214_-5 mRNA sequence 82 1e-12
23gb|BT016412.1| Zea mays clone Contig245 mRNA sequence 74 3e-10
24emb|X68678.1|ZMCYCL Z.mays gene for cyclophilin 74 3e-10
25gb|M55021.1|MZECYP Zea mays cyclophilin (CyP) mRNA, complete cds 74 3e-10
26gb|AF263542.1| Oryza sativa clone 19CAC microsatellite sequence 64 3e-07
27gb|AY351891.1| Nothofagus cunninghamii clone ncutas20 microsatel... 56 7e-05
28gb|AY391451.1| Danio rerio peptidylprolyl isomerase A (PPIA-1) m... 46 0.065
29gb|DQ445533.1| Graphocephala atropunctata isolate WHGA0927 putat... 46 0.065
30ref|NM_199957.1| Danio rerio peptidylprolyl isomerase A, like (p... 46 0.065
31gb|BC071370.1| Danio rerio peptidylprolyl isomerase A, like, mRN... 46 0.065
32gb|U36797.1|HMU36797 Hirudo medicinalis cyclophilin-A mRNA (hcyp... 46 0.065
33gb|BC059470.1| Danio rerio peptidylprolyl isomerase A, like, mRN... 46 0.065
34gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 44 0.26
35ref|NM_074348.4| Caenorhabditis elegans CYclophyliN family membe... 42 1.0
36emb|AL032663.1|CEY75B12B Caenorhabditis elegans YAC Y75B12B, com... 42 1.0
37gb|U27559.1|CEU27559 Caenorhabditis elegans cyclophilin (cyp-7) ... 42 1.0
38emb|CT571256.7| Mouse DNA sequence from clone RP24-135B13 on chr... 42 1.0
39gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 40 4.0
40emb|X80205.3|RSCHECTOR Rhodobacter sphaeroides aam1 gene (partia... 40 4.0
41emb|X80027.1|RSCHEYAW R.sphaeroides genes cheY, cheA, cheW and orfX 40 4.0
42emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete ... 40 4.0
43dbj|AK105186.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.0
44emb|CR381643.18| Zebrafish DNA sequence from clone DKEY-39N1 in ... 40 4.0
45gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 40 4.0 
>gb|AF262984.1|AF262984 Triticum aestivum cyclophilin A-3 (CyP3) mRNA, complete cds
          Length = 869

 Score =  186 bits (94), Expect = 3e-44
 Identities = 97/98 (98%)
 Strand = Plus / Minus

                                                                       
Query: 208 ctagagctggccgcagtcggcgatgacgacctgcttggagcagatgccgctgcgggagcc 267
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 586 ctagagctggccgcagtcggcgatgacgacctgcttggagcaggtgccgctgcgggagcc 527

                                                 
Query: 268 caccttctcgatgttcttgacgacgtccatgccctcga 305
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 526 caccttctcgatgttcttgacgacgtccatgccctcga 489



 Score =  168 bits (85), Expect = 7e-39
 Identities = 106/113 (93%)
 Strand = Plus / Minus

                                                                       
Query: 11  ggaagataaccatggcggccggacgcagatccagcagcctaaagagtccacctaaaaccc 70
           |||||||||||| ||| |||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 780 ggaagataaccaaggccgccggacgcagatccagcggcccaaagagtccacctaaaaccc 721

                                                                
Query: 71  tcctaaaccaaccacggagatctcatcggacggacaggggcaagacacgacac 123
           |||||||||||||||||||||||||||||||||||  ||| ||||||||||||
Sbjct: 720 tcctaaaccaaccacggagatctcatcggacggaccaggggaagacacgacac 668
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>gb|AY456124.1| Triticum aestivum cyclophilin A (CYP18-3) gene, partial cds
          Length = 494

 Score =  186 bits (94), Expect = 3e-44
 Identities = 97/98 (98%)
 Strand = Plus / Minus

                                                                       
Query: 208 ctagagctggccgcagtcggcgatgacgacctgcttggagcagatgccgctgcgggagcc 267
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 307 ctagagctggccgcagtcggcgatgacgacctgcttggagcaggtgccgctgcgggagcc 248

                                                 
Query: 268 caccttctcgatgttcttgacgacgtccatgccctcga 305
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 247 caccttctcgatgttcttgacgacgtccatgccctcga 210



 Score =  155 bits (78), Expect = 1e-34
 Identities = 99/106 (93%)
 Strand = Plus / Minus

                                                                       
Query: 18  aaccatggcggccggacgcagatccagcagcctaaagagtccacctaaaaccctcctaaa 77
           ||||| ||| |||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 494 aaccaaggccgccggacgcagatccagcggcccaaagagtccacctaaaaccctcctaaa 435

                                                         
Query: 78  ccaaccacggagatctcatcggacggacaggggcaagacacgacac 123
           ||||||||||||||||||||||||||||  ||| ||||||||||||
Sbjct: 434 ccaaccacggagatctcatcggacggaccaggggaagacacgacac 389
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>gb|AF262983.1|AF262983 Triticum aestivum cyclophilin A-2 (CyP2) mRNA, complete cds
          Length = 845

 Score =  182 bits (92), Expect = 4e-43
 Identities = 110/116 (94%)
 Strand = Plus / Minus

                                                                       
Query: 11  ggaagataaccatggcggccggacgcagatccagcagcctaaagagtccacctaaaaccc 70
           |||||||||||||||| ||||||| |||||||||| ||| ||||||||||||||||||||
Sbjct: 776 ggaagataaccatggccgccggacacagatccagcggccaaaagagtccacctaaaaccc 717

                                                                   
Query: 71  tcctaaaccaaccacggagatctcatcggacggacaggggcaagacacgacacgac 126
           |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 716 tcctaaaccaaccacggagatctcatcggacggacaaggggaagacacgacacgac 661



 Score =  178 bits (90), Expect = 7e-42
 Identities = 96/98 (97%)
 Strand = Plus / Minus

                                                                       
Query: 208 ctagagctggccgcagtcggcgatgacgacctgcttggagcagatgccgctgcgggagcc 267
           |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 586 ctagagctggccgcagtcggcgatgacgacttgcttggagcaggtgccgctgcgggagcc 527

                                                 
Query: 268 caccttctcgatgttcttgacgacgtccatgccctcga 305
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 526 caccttctcgatgttcttgacgacgtccatgccctcga 489
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>gb|AY456122.1| Triticum aestivum cyclophilin A (CYP18-2) gene, complete cds
          Length = 781

 Score =  182 bits (92), Expect = 4e-43
 Identities = 110/116 (94%)
 Strand = Plus / Minus

                                                                       
Query: 11  ggaagataaccatggcggccggacgcagatccagcagcctaaagagtccacctaaaaccc 70
           |||||||||||||||| ||||||| |||||||||| ||| ||||||||||||||||||||
Sbjct: 740 ggaagataaccatggccgccggacacagatccagcggccaaaagagtccacctaaaaccc 681

                                                                   
Query: 71  tcctaaaccaaccacggagatctcatcggacggacaggggcaagacacgacacgac 126
           |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 680 tcctaaaccaaccacggagatctcatcggacggacaaggggaagacacgacacgac 625



 Score =  178 bits (90), Expect = 7e-42
 Identities = 96/98 (97%)
 Strand = Plus / Minus

                                                                       
Query: 208 ctagagctggccgcagtcggcgatgacgacctgcttggagcagatgccgctgcgggagcc 267
           |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 550 ctagagctggccgcagtcggcgatgacgacttgcttggagcaggtgccgctgcgggagcc 491

                                                 
Query: 268 caccttctcgatgttcttgacgacgtccatgccctcga 305
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 490 caccttctcgatgttcttgacgacgtccatgccctcga 453
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>gb|AF262982.1|AF262982 Triticum aestivum cyclophilin A-1 (CyP1) mRNA, complete cds
          Length = 859

 Score =  178 bits (90), Expect = 7e-42
 Identities = 96/98 (97%)
 Strand = Plus / Minus

                                                                       
Query: 208 ctagagctggccgcagtcggcgatgacgacctgcttggagcagatgccgctgcgggagcc 267
           ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 578 ctagagctggccgcagtcggcgatgaccacctgcttggagcaggtgccgctgcgggagcc 519

                                                 
Query: 268 caccttctcgatgttcttgacgacgtccatgccctcga 305
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 518 caccttctcgatgttcttgacgacgtccatgccctcga 481



 Score =  174 bits (88), Expect = 1e-40
 Identities = 109/116 (93%)
 Strand = Plus / Minus

                                                                       
Query: 11  ggaagataaccatggcggccggacgcagatccagcagcctaaagagtccacctaaaaccc 70
           |||||||||||| |||||||||||  ||||||||||||| ||||||||||||||||||||
Sbjct: 784 ggaagataaccaaggcggccggacagagatccagcagcccaaagagtccacctaaaaccc 725

                                                                   
Query: 71  tcctaaaccaaccacggagatctcatcggacggacaggggcaagacacgacacgac 126
           |||||||||||||||||||||||||||||||||||  ||| |||||||||||||||
Sbjct: 724 tcctaaaccaaccacggagatctcatcggacggaccaggggaagacacgacacgac 669
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>gb|AY456123.1| Triticum aestivum cyclophilin A (CYP18-1) gene, partial cds
          Length = 519

 Score =  178 bits (90), Expect = 7e-42
 Identities = 96/98 (97%)
 Strand = Plus / Minus

                                                                       
Query: 208 ctagagctggccgcagtcggcgatgacgacctgcttggagcagatgccgctgcgggagcc 267
           ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 308 ctagagctggccgcagtcggcgatgaccacctgcttggagcaggtgccgctgcgggagcc 249

                                                 
Query: 268 caccttctcgatgttcttgacgacgtccatgccctcga 305
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 248 caccttctcgatgttcttgacgacgtccatgccctcga 211



 Score =  174 bits (88), Expect = 1e-40
 Identities = 109/116 (93%)
 Strand = Plus / Minus

                                                                       
Query: 11  ggaagataaccatggcggccggacgcagatccagcagcctaaagagtccacctaaaaccc 70
           |||||||||||| |||||||||||  ||||||||||||| ||||||||||||||||||||
Sbjct: 514 ggaagataaccaaggcggccggacagagatccagcagcccaaagagtccacctaaaaccc 455

                                                                   
Query: 71  tcctaaaccaaccacggagatctcatcggacggacaggggcaagacacgacacgac 126
           |||||||||||||||||||||||||||||||||||  ||| |||||||||||||||
Sbjct: 454 tcctaaaccaaccacggagatctcatcggacggaccaggggaagacacgacacgac 399
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>gb|AF384147.1|AF384147 Triticum aestivum cyclophilin mRNA, partial cds
          Length = 430

 Score =  163 bits (82), Expect = 4e-37
 Identities = 94/98 (95%)
 Strand = Plus / Minus

                                                                       
Query: 208 ctagagctggccgcagtcggcgatgacgacctgcttggagcagatgccgctgcgggagcc 267
           |||||||||||||||||||||||||||||||||||||| |  | ||||||||||||||||
Sbjct: 396 ctagagctggccgcagtcggcgatgacgacctgcttggcggtggtgccgctgcgggagcc 337

                                                 
Query: 268 caccttctcgatgttcttgacgacgtccatgccctcga 305
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 336 caccttctcgatgttcttgacgacgtccatgccctcga 299
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>ref|XM_463914.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 885

 Score =  111 bits (56), Expect = 1e-21
 Identities = 86/96 (89%)
 Strand = Plus / Minus

                                                                       
Query: 210 agagctggccgcagtcggcgatgacgacctgcttggagcagatgccgctgcgggagccca 269
           ||||||||||||||||||||||||||||| |||||| |  | | |||| |||||| ||||
Sbjct: 607 agagctggccgcagtcggcgatgacgaccggcttggcggtgctcccgccgcgggatccca 548

                                               
Query: 270 ccttctcgatgttcttgacgacgtccatgccctcga 305
           |||||||||||  |||||||||||||||||||||||
Sbjct: 547 ccttctcgatggccttgacgacgtccatgccctcga 512
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>ref|XM_506694.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0088N06.23
           mRNA
          Length = 887

 Score =  111 bits (56), Expect = 1e-21
 Identities = 86/96 (89%)
 Strand = Plus / Minus

                                                                       
Query: 210 agagctggccgcagtcggcgatgacgacctgcttggagcagatgccgctgcgggagccca 269
           ||||||||||||||||||||||||||||| |||||| |  | | |||| |||||| ||||
Sbjct: 608 agagctggccgcagtcggcgatgacgaccggcttggcggtgctcccgccgcgggatccca 549

                                               
Query: 270 ccttctcgatgttcttgacgacgtccatgccctcga 305
           |||||||||||  |||||||||||||||||||||||
Sbjct: 548 ccttctcgatggccttgacgacgtccatgccctcga 513
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>gb|AF263543.1| Oryza sativa clone 15CAC microsatellite sequence
          Length = 435

 Score =  111 bits (56), Expect = 1e-21
 Identities = 86/96 (89%)
 Strand = Plus / Minus

                                                                       
Query: 210 agagctggccgcagtcggcgatgacgacctgcttggagcagatgccgctgcgggagccca 269
           ||||||||||||||||||||||||||||| |||||| |  | | |||| |||||| ||||
Sbjct: 120 agagctggccgcagtcggcgatgacgaccggcttggcggtgctcccgccgcgggatccca 61

                                               
Query: 270 ccttctcgatgttcttgacgacgtccatgccctcga 305
           |||||||||||  |||||||||||||||||||||||
Sbjct: 60  ccttctcgatggccttgacgacgtccatgccctcga 25
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>gb|DQ480736.1| Oryza sativa (indica cultivar-group) cyclophilinA mRNA, complete
           cds
          Length = 588

 Score =  111 bits (56), Expect = 1e-21
 Identities = 86/96 (89%)
 Strand = Plus / Minus

                                                                       
Query: 210 agagctggccgcagtcggcgatgacgacctgcttggagcagatgccgctgcgggagccca 269
           ||||||||||||||||||||||||||||| |||||| |  | | |||| |||||| ||||
Sbjct: 524 agagctggccgcagtcggcgatgacgaccggcttggcggtgctcccgccgcgggatccca 465

                                               
Query: 270 ccttctcgatgttcttgacgacgtccatgccctcga 305
           |||||||||||  |||||||||||||||||||||||
Sbjct: 464 ccttctcgatggccttgacgacgtccatgccctcga 429
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>dbj|AK061894.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-G07, full
           insert sequence
          Length = 887

 Score =  111 bits (56), Expect = 1e-21
 Identities = 86/96 (89%)
 Strand = Plus / Minus

                                                                       
Query: 210 agagctggccgcagtcggcgatgacgacctgcttggagcagatgccgctgcgggagccca 269
           ||||||||||||||||||||||||||||| |||||| |  | | |||| |||||| ||||
Sbjct: 608 agagctggccgcagtcggcgatgacgaccggcttggcggtgctcccgccgcgggatccca 549

                                               
Query: 270 ccttctcgatgttcttgacgacgtccatgccctcga 305
           |||||||||||  |||||||||||||||||||||||
Sbjct: 548 ccttctcgatggccttgacgacgtccatgccctcga 513
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  111 bits (56), Expect = 1e-21
 Identities = 86/96 (89%)
 Strand = Plus / Minus

                                                                           
Query: 210     agagctggccgcagtcggcgatgacgacctgcttggagcagatgccgctgcgggagccca 269
               ||||||||||||||||||||||||||||| |||||| |  | | |||| |||||| ||||
Sbjct: 1116673 agagctggccgcagtcggcgatgacgaccggcttggcggtgctcccgccgcgggatccca 1116614

                                                   
Query: 270     ccttctcgatgttcttgacgacgtccatgccctcga 305
               |||||||||||  |||||||||||||||||||||||
Sbjct: 1116613 ccttctcgatggccttgacgacgtccatgccctcga 1116578
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>dbj|AP004078.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1020_C02
          Length = 124578

 Score =  111 bits (56), Expect = 1e-21
 Identities = 86/96 (89%)
 Strand = Plus / Minus

                                                                         
Query: 210   agagctggccgcagtcggcgatgacgacctgcttggagcagatgccgctgcgggagccca 269
             ||||||||||||||||||||||||||||| |||||| |  | | |||| |||||| ||||
Sbjct: 69197 agagctggccgcagtcggcgatgacgaccggcttggcggtgctcccgccgcgggatccca 69138

                                                 
Query: 270   ccttctcgatgttcttgacgacgtccatgccctcga 305
             |||||||||||  |||||||||||||||||||||||
Sbjct: 69137 ccttctcgatggccttgacgacgtccatgccctcga 69102
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>dbj|AP005851.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBb0088N06
          Length = 123454

 Score =  111 bits (56), Expect = 1e-21
 Identities = 86/96 (89%)
 Strand = Plus / Minus

                                                                          
Query: 210    agagctggccgcagtcggcgatgacgacctgcttggagcagatgccgctgcgggagccca 269
              ||||||||||||||||||||||||||||| |||||| |  | | |||| |||||| ||||
Sbjct: 105381 agagctggccgcagtcggcgatgacgaccggcttggcggtgctcccgccgcgggatccca 105322

                                                  
Query: 270    ccttctcgatgttcttgacgacgtccatgccctcga 305
              |||||||||||  |||||||||||||||||||||||
Sbjct: 105321 ccttctcgatggccttgacgacgtccatgccctcga 105286
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>dbj|AK098919.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002N03, full
           insert sequence
          Length = 885

 Score =  111 bits (56), Expect = 1e-21
 Identities = 86/96 (89%)
 Strand = Plus / Minus

                                                                       
Query: 210 agagctggccgcagtcggcgatgacgacctgcttggagcagatgccgctgcgggagccca 269
           ||||||||||||||||||||||||||||| |||||| |  | | |||| |||||| ||||
Sbjct: 607 agagctggccgcagtcggcgatgacgaccggcttggcggtgctcccgccgcgggatccca 548

                                               
Query: 270 ccttctcgatgttcttgacgacgtccatgccctcga 305
           |||||||||||  |||||||||||||||||||||||
Sbjct: 547 ccttctcgatggccttgacgacgtccatgccctcga 512
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>gb|L29469.1|RICCYP2G Oryza sativa cyclophilin 2 (Cyp2) gene, complete cds
          Length = 2323

 Score =  111 bits (56), Expect = 1e-21
 Identities = 86/96 (89%)
 Strand = Plus / Minus

                                                                        
Query: 210  agagctggccgcagtcggcgatgacgacctgcttggagcagatgccgctgcgggagccca 269
            ||||||||||||||||||||||||||||| |||||| |  | | |||| |||||| ||||
Sbjct: 1663 agagctggccgcagtcggcgatgacgaccggcttggcggtgctcccgccgcgggatccca 1604

                                                
Query: 270  ccttctcgatgttcttgacgacgtccatgccctcga 305
            |||||||||||  |||||||||||||||||||||||
Sbjct: 1603 ccttctcgatggccttgacgacgtccatgccctcga 1568
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>dbj|D29701.1|RICYK13 Oryza sativa mRNA, partial homologous to cyclophilin gene
          Length = 356

 Score =  101 bits (51), Expect = 1e-18
 Identities = 81/91 (89%)
 Strand = Plus / Minus

                                                                       
Query: 215 tggccgcagtcggcgatgacgacctgcttggagcagatgccgctgcgggagcccaccttc 274
           |||||||||||||||||||||||| |||||| |  | | |||| |||||| |||||||||
Sbjct: 260 tggccgcagtcggcgatgacgaccggcttggcggtgctcccgccgcgggatcccaccttc 201

                                          
Query: 275 tcgatgttcttgacgacgtccatgccctcga 305
           ||||||  |||||||||||||||||||||||
Sbjct: 200 tcgatggccttgacgacgtccatgccctcga 170
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>gb|L29470.1|RICCYP2R Oryza sativa cyclophilin 2 (Cyp2) mRNA, complete cds
          Length = 824

 Score = 95.6 bits (48), Expect = 8e-17
 Identities = 84/96 (87%)
 Strand = Plus / Minus

                                                                       
Query: 210 agagctggccgcagtcggcgatgacgacctgcttggagcagatgccgctgcgggagccca 269
           ||||||||||||||||||||||||| ||  |||||| |  | | |||| |||||| ||||
Sbjct: 552 agagctggccgcagtcggcgatgaccacgggcttggcggtgctcccgccgcgggatccca 493

                                               
Query: 270 ccttctcgatgttcttgacgacgtccatgccctcga 305
           |||||||||||  |||||||||||||||||||||||
Sbjct: 492 ccttctcgatggccttgacgacgtccatgccctcga 457
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>gb|BT016413.1| Zea mays clone Contig246 mRNA sequence
          Length = 868

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 50/53 (94%)
 Strand = Plus / Minus

                                                                
Query: 253 gccgctgcgggagcccaccttctcgatgttcttgacgacgtccatgccctcga 305
           ||||||||||||||||||||||||||||  ||||||||| |||||||||||||
Sbjct: 519 gccgctgcgggagcccaccttctcgatggccttgacgacctccatgccctcga 467
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>gb|BT017873.1| Zea mays clone EL01N0513A10.c mRNA sequence
          Length = 978

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 50/53 (94%)
 Strand = Plus / Minus

                                                                
Query: 253 gccgctgcgggagcccaccttctcgatgttcttgacgacgtccatgccctcga 305
           ||||||||||||||||||||||||||||  ||||||||| |||||||||||||
Sbjct: 635 gccgctgcgggagcccaccttctcgatggccttgacgacctccatgccctcga 583
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>gb|AY109901.1| Zea mays CL2214_-5 mRNA sequence
          Length = 636

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 50/53 (94%)
 Strand = Plus / Minus

                                                                
Query: 253 gccgctgcgggagcccaccttctcgatgttcttgacgacgtccatgccctcga 305
           ||||||||||||||||||||||||||||  ||||||||| |||||||||||||
Sbjct: 326 gccgctgcgggagcccaccttctcgatggccttgacgacctccatgccctcga 274
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>gb|BT016412.1| Zea mays clone Contig245 mRNA sequence
          Length = 858

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 49/53 (92%)
 Strand = Plus / Minus

                                                                
Query: 253 gccgctgcgggagcccaccttctcgatgttcttgacgacgtccatgccctcga 305
           |||| |||||| ||||||||||||||||  |||||||||||||||||||||||
Sbjct: 534 gccgttgcgggtgcccaccttctcgatggccttgacgacgtccatgccctcga 482
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>emb|X68678.1|ZMCYCL Z.mays gene for cyclophilin
          Length = 2598

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 49/53 (92%)
 Strand = Plus / Minus

                                                                 
Query: 253  gccgctgcgggagcccaccttctcgatgttcttgacgacgtccatgccctcga 305
            |||| |||||| ||||||||||||||||  |||||||||||||||||||||||
Sbjct: 1532 gccgttgcgggtgcccaccttctcgatggccttgacgacgtccatgccctcga 1480
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>gb|M55021.1|MZECYP Zea mays cyclophilin (CyP) mRNA, complete cds
          Length = 792

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 49/53 (92%)
 Strand = Plus / Minus

                                                                
Query: 253 gccgctgcgggagcccaccttctcgatgttcttgacgacgtccatgccctcga 305
           |||| |||||| ||||||||||||||||  |||||||||||||||||||||||
Sbjct: 495 gccgttgcgggtgcccaccttctcgatggccttgacgacgtccatgccctcga 443
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>gb|AF263542.1| Oryza sativa clone 19CAC microsatellite sequence
          Length = 429

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 35/36 (97%)
 Strand = Plus / Minus

                                               
Query: 210 agagctggccgcagtcggcgatgacgacctgcttgg 245
           ||||||||||||||||||||||||||||| ||||||
Sbjct: 99  agagctggccgcagtcggcgatgacgaccggcttgg 64
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>gb|AY351891.1| Nothofagus cunninghamii clone ncutas20 microsatellite sequence
          Length = 778

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                   
Query: 266 cccaccttctcgatgttcttgacgacgtccatgccctcga 305
           |||||||||||||||  |||||||||||||| ||||||||
Sbjct: 92  cccaccttctcgatggccttgacgacgtccaagccctcga 53
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>gb|AY391451.1| Danio rerio peptidylprolyl isomerase A (PPIA-1) mRNA, complete cds
          Length = 743

 Score = 46.1 bits (23), Expect = 0.065
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 209 tagagctggccgcagtcggcgatgacgacct 239
           |||||||||||||||| |||||| |||||||
Sbjct: 557 tagagctggccgcagttggcgatcacgacct 527
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>gb|DQ445533.1| Graphocephala atropunctata isolate WHGA0927 putative
           peptidyl-prolyl cis-trans isomerase mRNA, complete cds
          Length = 498

 Score = 46.1 bits (23), Expect = 0.065
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 281 ttcttgacgacgtccatgccctc 303
           |||||||||||||||||||||||
Sbjct: 422 ttcttgacgacgtccatgccctc 400
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>ref|NM_199957.1| Danio rerio peptidylprolyl isomerase A, like (ppial), mRNA
          Length = 822

 Score = 46.1 bits (23), Expect = 0.065
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 209 tagagctggccgcagtcggcgatgacgacct 239
           |||||||||||||||| |||||| |||||||
Sbjct: 634 tagagctggccgcagttggcgatcacgacct 604
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>gb|BC071370.1| Danio rerio peptidylprolyl isomerase A, like, mRNA (cDNA clone
           MGC:86688 IMAGE:6895545), complete cds
          Length = 784

 Score = 46.1 bits (23), Expect = 0.065
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 209 tagagctggccgcagtcggcgatgacgacct 239
           |||||||||||||||| |||||| |||||||
Sbjct: 566 tagagctggccgcagttggcgatcacgacct 536
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>gb|U36797.1|HMU36797 Hirudo medicinalis cyclophilin-A mRNA (hcyp),complete cds
          Length = 617

 Score = 46.1 bits (23), Expect = 0.065
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 209 tagagctggccgcagtcggcgat 231
           |||||||||||||||||||||||
Sbjct: 482 tagagctggccgcagtcggcgat 460
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>gb|BC059470.1| Danio rerio peptidylprolyl isomerase A, like, mRNA (cDNA clone
           MGC:73102 IMAGE:4786094), complete cds
          Length = 822

 Score = 46.1 bits (23), Expect = 0.065
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 209 tagagctggccgcagtcggcgatgacgacct 239
           |||||||||||||||| |||||| |||||||
Sbjct: 634 tagagctggccgcagttggcgatcacgacct 604
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>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                 
Query: 272     ttctcgatgttcttgacgacgtccatgccctcga 305
               |||| ||| |||| ||||||||||||||||||||
Sbjct: 2318118 ttcttgatcttctcgacgacgtccatgccctcga 2318085
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>ref|NM_074348.4| Caenorhabditis elegans CYclophyliN family member (cyn-7) (cyn-7)
           mRNA, complete cds
          Length = 644

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 209 tagagctggccgcagtcggcgatga 233
           |||||||| ||||||||||||||||
Sbjct: 545 tagagctgtccgcagtcggcgatga 521
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>emb|AL032663.1|CEY75B12B Caenorhabditis elegans YAC Y75B12B, complete sequence
          Length = 23906

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 209  tagagctggccgcagtcggcgatga 233
            |||||||| ||||||||||||||||
Sbjct: 3489 tagagctgtccgcagtcggcgatga 3513
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>gb|U27559.1|CEU27559 Caenorhabditis elegans cyclophilin (cyp-7) mRNA, complete cds
          Length = 525

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 209 tagagctggccgcagtcggcgatga 233
           |||||||| ||||||||||||||||
Sbjct: 524 tagagctgtccgcagtcggcgatga 500
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>emb|CT571256.7| Mouse DNA sequence from clone RP24-135B13 on chromosome 13, complete
             sequence
          Length = 183340

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 57    tccacctaaaaccctcctaaaccaaccac 85
             ||||||| ||||| |||||||||||||||
Sbjct: 53760 tccacctgaaaccatcctaaaccaaccac 53732
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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 282     tcttgacgacgtccatgccc 301
               ||||||||||||||||||||
Sbjct: 1068782 tcttgacgacgtccatgccc 1068801
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>emb|X80205.3|RSCHECTOR Rhodobacter sphaeroides aam1 gene (partial), ORF7, cheY5 gene, mcpB
             gene, tlpS gene, mcpA gene, cheD gene, cheY1 gene, cheA1
             gene, cheW1 gene, cheR1 gene, cheY2 gene, ORF2 and ORF3
             (partial)
          Length = 14713

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 282   tcttgacgacgtccatgccc 301
             ||||||||||||||||||||
Sbjct: 11791 tcttgacgacgtccatgccc 11772
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>emb|X80027.1|RSCHEYAW R.sphaeroides genes cheY, cheA, cheW and orfX
          Length = 2997

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 282  tcttgacgacgtccatgccc 301
            ||||||||||||||||||||
Sbjct: 2397 tcttgacgacgtccatgccc 2378
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>emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete genome; segment 17/29
          Length = 248550

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 216    ggccgcagtcggcgatgacg 235
              ||||||||||||||||||||
Sbjct: 116807 ggccgcagtcggcgatgacg 116788
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>dbj|AK105186.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-106-D12, full
           insert sequence
          Length = 682

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 274 ctcgatgttcttgacgacgtccatgccctcga 305
           |||||| |||||||| ||||||||||| ||||
Sbjct: 505 ctcgatcttcttgacaacgtccatgccgtcga 474
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>emb|CR381643.18| Zebrafish DNA sequence from clone DKEY-39N1 in linkage group 8, complete
              sequence
          Length = 217745

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 259    gcgggagcccaccttctcgatgtt 282
              |||||||||||||||| |||||||
Sbjct: 174848 gcgggagcccaccttcacgatgtt 174871
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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 274     ctcgatgttcttgacgacgtccatgccc 301
               |||||| ||||| |||||||||||||||
Sbjct: 2184952 ctcgatcttcttcacgacgtccatgccc 2184979


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,239,413
Number of Sequences: 3902068
Number of extensions: 1239413
Number of successful extensions: 24247
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24116
Number of HSP's gapped (non-prelim): 119
length of query: 305
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 283
effective length of database: 17,147,199,772
effective search space: 4852657535476
effective search space used: 4852657535476
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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