Clone Information

BLAST Search Result

Clone Name	rbags27l23
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RL13A_LUPLU (O49885) 60S ribosomal protein L13a	182	6e-46
2	R13AD_ARATH (Q9FKC0) 60S ribosomal protein L13a-4	181	8e-46
3	R13AC_ARATH (Q9SVR0) 60S ribosomal protein L13a-3	180	2e-45
4	R13AB_ARATH (Q9LRX8) 60S ribosomal protein L13a-2	178	9e-45
5	RL13A_PICMA (O65055) 60S ribosomal protein L13a	176	5e-44
6	R13AA_ARATH (Q9SFU1) 60S ribosomal protein L13a-1	175	8e-44
7	RL13A_CYAPA (P93099) 60S ribosomal protein L13a	134	2e-31
8	RL13A_BOVIN (Q3SZ90) 60S ribosomal protein L13a	129	6e-30
9	RL13A_PONPY (Q5RA38) 60S ribosomal protein L13a	127	2e-29
10	RL13A_HUMAN (P40429) 60S ribosomal protein L13a (23 kDa highly b...	127	2e-29
11	RL13A_MACFA (Q4R8Z2) 60S ribosomal protein L13a	125	5e-29
12	RL13A_RAT (P35427) 60S ribosomal protein L13a	124	2e-28
13	RL16_NEUCR (Q9P720) 60S ribosomal protein L16	123	3e-28
14	RL13A_MOUSE (P19253) 60S ribosomal protein L13a (Transplantation...	122	5e-28
15	RL13A_SALTR (Q91487) 60S ribosomal protein L13a (Transplantation...	119	7e-27
16	RL16B_YEAST (P26785) 60S ribosomal protein L16-B (YL15) (RP23)	111	1e-24
17	RL16A_YEAST (P26784) 60S ribosomal protein L16-A (L13A) (RP22)	110	2e-24
18	RL13A_SPOFR (Q962U0) 60S ribosomal protein L13A	108	7e-24
19	RL16A_SCHPO (O42848) 60S ribosomal protein L16-A	108	7e-24
20	RL16B_SCHPO (O42991) 60S ribosomal protein L16-B	107	2e-23
21	RL13A_DROME (Q9VNE9) 60S ribosomal protein L13A	107	2e-23
22	RL13A_CHOPR (Q8MUR4) 60S ribosomal protein L13A	105	1e-22
23	RL13A_CAEEL (Q27389) 60S ribosomal protein L13a	105	1e-22
24	RL16C_SCHPO (O43004) 60S ribosomal protein L16-C	99	5e-21
25	RL13A_PIG (Q95307) 60S ribosomal protein L13a (Fragment)	88	1e-17
26	RLSX_METTH (O26146) Fused L13/S9 ribosomal protein [Includes: 50...	45	9e-05
27	RL13_PYRHO (O59300) 50S ribosomal protein L13P	45	9e-05
28	RL13_PYRAB (Q9V196) 50S ribosomal protein L13P	45	1e-04
29	RL13_SULSO (P95991) 50S ribosomal protein L13P	44	2e-04
30	RL13_AERPE (Q9YB50) 50S ribosomal protein L13P	44	2e-04
31	RL13_ARCFU (O29137) 50S ribosomal protein L13P	43	6e-04
32	RL13_HALMA (P29198) 50S ribosomal protein L13P (Hmal13)	40	0.003
33	RL13_METJA (P54023) 50S ribosomal protein L13P	37	0.044
34	CO9A2_CHICK (P12108) Collagen alpha-2(IX) chain precursor	34	0.22
35	CCDC9_HUMAN (Q9Y3X0) Coiled-coil domain-containing protein 9	34	0.28
36	RL13_HALSA (Q9HQJ3) 50S ribosomal protein L13P	33	0.37
37	Y2023_MYCBO (P64918) Hypothetical protein Mb2023	30	4.1
38	Y2000_MYCTU (P64917) Hypothetical protein Rv2000/MT2056	30	4.1
39	PO3F1_HUMAN (Q03052) POU domain, class 3, transcription factor 1...	30	5.3
40	MADCA_MOUSE (Q61826) Mucosal addressin cell adhesion molecule 1 ...	29	7.0
41	CAPG_HUMAN (P40121) Macrophage capping protein (Actin-regulatory...	29	7.0
42	CAPG_MOUSE (P24452) Macrophage capping protein (Myc basic motif ...	29	7.0
43	DEND_RAT (P50617) Dendrin	29	7.0

>RL13A_LUPLU (O49885) 60S ribosomal protein L13a|
          Length = 205

 Score =  182 bits (461), Expect = 6e-46
 Identities = 85/121 (70%), Positives = 100/121 (82%)
 Frame = -1

Query: 526 WRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLGQ 347
           WRT+RGMIPHKT RGE ALARLK YEG+PPP+D+ KR+V+PDALKVLRLQ GH+YCLLGQ
Sbjct: 85  WRTVRGMIPHKTKRGEHALARLKVYEGIPPPFDKQKRLVVPDALKVLRLQKGHKYCLLGQ 144

Query: 346 LSKEVGWNYADTIXXXXXXXXXXXKVSYDRRKQLAKLRVKAEKAAEEKLGTQLEILAPIK 167
           LS EVGWNY DTI           +V Y+R+KQL KLRVKAE+ A+EKLG+QL+ILAP+K
Sbjct: 145 LSSEVGWNYYDTIKELEKKRKERSQVVYERKKQLNKLRVKAEQVAQEKLGSQLDILAPVK 204

Query: 166 Y 164
           Y
Sbjct: 205 Y 205

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>R13AD_ARATH (Q9FKC0) 60S ribosomal protein L13a-4|
          Length = 206

 Score =  181 bits (460), Expect = 8e-46
 Identities = 88/121 (72%), Positives = 97/121 (80%)
 Frame = -1

Query: 526 WRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLGQ 347
           WRT+RGMIPHKT RG AALARLK YEGVP PYD+ KRMVIPDALKVLRLQ GH+YCLLG+
Sbjct: 86  WRTVRGMIPHKTKRGAAALARLKVYEGVPTPYDKIKRMVIPDALKVLRLQAGHKYCLLGR 145

Query: 346 LSKEVGWNYADTIXXXXXXXXXXXKVSYDRRKQLAKLRVKAEKAAEEKLGTQLEILAPIK 167
           LS EVGWN+ DTI            V Y+R+KQL KLRVKAEK AEEKLG QL+ILAP+K
Sbjct: 146 LSSEVGWNHYDTIKELETKRKERAHVVYERKKQLNKLRVKAEKVAEEKLGAQLDILAPVK 205

Query: 166 Y 164
           Y
Sbjct: 206 Y 206

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>R13AC_ARATH (Q9SVR0) 60S ribosomal protein L13a-3|
          Length = 206

 Score =  180 bits (457), Expect = 2e-45
 Identities = 84/121 (69%), Positives = 99/121 (81%)
 Frame = -1

Query: 526 WRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLGQ 347
           WRT+RGMIPHKT RG AALARLK +EG+PPPYD+ KRMVIPDALKVLRLQ GH+YCLLG+
Sbjct: 86  WRTVRGMIPHKTKRGAAALARLKVFEGIPPPYDKIKRMVIPDALKVLRLQSGHKYCLLGR 145

Query: 346 LSKEVGWNYADTIXXXXXXXXXXXKVSYDRRKQLAKLRVKAEKAAEEKLGTQLEILAPIK 167
           LS EVGWN+ DTI           +V Y+R+KQL KLR KAEK AEE+LG+QL++LAP+K
Sbjct: 146 LSSEVGWNHYDTIKELETKRKERSQVMYERKKQLNKLRTKAEKVAEERLGSQLDVLAPVK 205

Query: 166 Y 164
           Y
Sbjct: 206 Y 206

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>R13AB_ARATH (Q9LRX8) 60S ribosomal protein L13a-2|
          Length = 206

 Score =  178 bits (451), Expect = 9e-45
 Identities = 85/121 (70%), Positives = 97/121 (80%)
 Frame = -1

Query: 526 WRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLGQ 347
           WRT+RGMIPHKT RG AALARLK +EGVPPPYD+ KRMVIPDALKVLRLQ GH+YCLLG+
Sbjct: 86  WRTVRGMIPHKTKRGAAALARLKVFEGVPPPYDKVKRMVIPDALKVLRLQAGHKYCLLGR 145

Query: 346 LSKEVGWNYADTIXXXXXXXXXXXKVSYDRRKQLAKLRVKAEKAAEEKLGTQLEILAPIK 167
           LS EVGWN+ DTI           +  Y+R+KQL KLR KAEK AEEKLG+QL++LA IK
Sbjct: 146 LSSEVGWNHYDTIKELEVKRKERSQALYERKKQLTKLRAKAEKVAEEKLGSQLDVLASIK 205

Query: 166 Y 164
           Y
Sbjct: 206 Y 206

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>RL13A_PICMA (O65055) 60S ribosomal protein L13a|
          Length = 206

 Score =  176 bits (445), Expect = 5e-44
 Identities = 85/122 (69%), Positives = 100/122 (81%)
 Frame = -1

Query: 529 LWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLG 350
           LWRTIRGMIPHKT RG AALA L+A+EGVPPPYDR KRMVIPDALKVLRLQPGH+YCLLG
Sbjct: 85  LWRTIRGMIPHKTKRGAAALATLRAFEGVPPPYDRKKRMVIPDALKVLRLQPGHKYCLLG 144

Query: 349 QLSKEVGWNYADTIXXXXXXXXXXXKVSYDRRKQLAKLRVKAEKAAEEKLGTQLEILAPI 170
           +LSKEVGW++ DTI           +VSY+RRKQLAKLR KA + AE++L  ++E+LA +
Sbjct: 145 RLSKEVGWHHFDTITELEEKRKAKAQVSYERRKQLAKLRSKAVELAEKQLAPEMELLASL 204

Query: 169 KY 164
           KY
Sbjct: 205 KY 206

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>R13AA_ARATH (Q9SFU1) 60S ribosomal protein L13a-1|
          Length = 206

 Score =  175 bits (443), Expect = 8e-44
 Identities = 82/121 (67%), Positives = 97/121 (80%)
 Frame = -1

Query: 526 WRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLGQ 347
           WRT+RGMIPHKT RG  ALARLK +EGVP PYD+ KRMV+PDALKVLRLQ GH+YCLLG+
Sbjct: 86  WRTVRGMIPHKTKRGANALARLKVFEGVPTPYDKIKRMVVPDALKVLRLQAGHKYCLLGR 145

Query: 346 LSKEVGWNYADTIXXXXXXXXXXXKVSYDRRKQLAKLRVKAEKAAEEKLGTQLEILAPIK 167
           LS EVGWN+ DTI           +  Y+R+KQL+KLR KAEK AEEKLG+QL++LAP+K
Sbjct: 146 LSSEVGWNHYDTIKELENKRKERAQAVYERKKQLSKLRAKAEKVAEEKLGSQLDVLAPVK 205

Query: 166 Y 164
           Y
Sbjct: 206 Y 206

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>RL13A_CYAPA (P93099) 60S ribosomal protein L13a|
          Length = 200

 Score =  134 bits (336), Expect = 2e-31
 Identities = 63/109 (57%), Positives = 76/109 (69%)
 Frame = -1

Query: 529 LWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLG 350
           LWRTIRGMIPHKT RG AAL RLKA+EGVPPPYD+ KRMVIP AL+VLRL+PG ++C+LG
Sbjct: 79  LWRTIRGMIPHKTPRGAAALERLKAFEGVPPPYDKMKRMVIPQALRVLRLKPGRKFCVLG 138

Query: 349 QLSKEVGWNYADTIXXXXXXXXXXXKVSYDRRKQLAKLRVKAEKAAEEK 203
           +L+ EVGW ++D +              Y R+K L  LR KA  A   K
Sbjct: 139 RLATEVGWRHSDLVTRLEEKRKTKSAAFYARKKTLVNLRAKAAVAVASK 187

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>RL13A_BOVIN (Q3SZ90) 60S ribosomal protein L13a|
          Length = 202

 Score =  129 bits (323), Expect = 6e-30
 Identities = 59/116 (50%), Positives = 81/116 (69%)
 Frame = -1

Query: 526 WRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLGQ 347
           WRT+RGM+PHKT RG+AAL RLK ++G+PPPYD+ KRMV+P ALKV+RL+P  ++  LG+
Sbjct: 80  WRTVRGMLPHKTKRGQAALERLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGR 139

Query: 346 LSKEVGWNYADTIXXXXXXXXXXXKVSYDRRKQLAKLRVKAEKAAEEKLGTQLEIL 179
           L+ EVGW Y               K+ Y ++KQL +LR +AEK  E+K+G   E+L
Sbjct: 140 LAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNIEKKIGKFTEVL 195

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>RL13A_PONPY (Q5RA38) 60S ribosomal protein L13a|
          Length = 202

 Score =  127 bits (319), Expect = 2e-29
 Identities = 58/116 (50%), Positives = 80/116 (68%)
 Frame = -1

Query: 526 WRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLGQ 347
           WRT+RGM+PHKT RG+AAL RLK ++G+PPPYD+ KRMV+P ALKV+RL+P  ++  LG+
Sbjct: 80  WRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGR 139

Query: 346 LSKEVGWNYADTIXXXXXXXXXXXKVSYDRRKQLAKLRVKAEKAAEEKLGTQLEIL 179
           L+ EVGW Y               K+ Y ++KQL +LR +AEK  E+K+    E+L
Sbjct: 140 LAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLVRLRKQAEKNVEKKIDKYTEVL 195

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>RL13A_HUMAN (P40429) 60S ribosomal protein L13a (23 kDa highly basic protein)|
          Length = 202

 Score =  127 bits (318), Expect = 2e-29
 Identities = 58/116 (50%), Positives = 80/116 (68%)
 Frame = -1

Query: 526 WRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLGQ 347
           WRT+RGM+PHKT RG+AAL RLK ++G+PPPYD+ KRMV+P ALKV+RL+P  ++  LG+
Sbjct: 80  WRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGR 139

Query: 346 LSKEVGWNYADTIXXXXXXXXXXXKVSYDRRKQLAKLRVKAEKAAEEKLGTQLEIL 179
           L+ EVGW Y               K+ Y ++KQL +LR +AEK  E+K+    E+L
Sbjct: 140 LAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTEVL 195

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>RL13A_MACFA (Q4R8Z2) 60S ribosomal protein L13a|
          Length = 202

 Score =  125 bits (315), Expect = 5e-29
 Identities = 57/116 (49%), Positives = 80/116 (68%)
 Frame = -1

Query: 526 WRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLGQ 347
           WRT+RGM+PHKT RG+AAL RLK ++G+PPPYD+ KRMV+P ALKV+RL+P  ++  LG+
Sbjct: 80  WRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGR 139

Query: 346 LSKEVGWNYADTIXXXXXXXXXXXKVSYDRRKQLAKLRVKAEKAAEEKLGTQLEIL 179
           L+ EVGW Y               K+ Y ++KQL +LR +AEK  E+K+    ++L
Sbjct: 140 LAHEVGWKYQAVTTTLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTQVL 195

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>RL13A_RAT (P35427) 60S ribosomal protein L13a|
          Length = 202

 Score =  124 bits (311), Expect = 2e-28
 Identities = 58/116 (50%), Positives = 79/116 (68%)
 Frame = -1

Query: 526 WRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLGQ 347
           WRT+RGM+PHKT RG+AAL RLK  +G+PPPYD+ KRMV+P ALKV+RL+P  ++  LG+
Sbjct: 80  WRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGR 139

Query: 346 LSKEVGWNYADTIXXXXXXXXXXXKVSYDRRKQLAKLRVKAEKAAEEKLGTQLEIL 179
           L+ EVGW Y               K+ Y ++KQL +LR +AEK  E+K+    E+L
Sbjct: 140 LAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLLRLRKQAEKNVEKKICKFTEVL 195

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>RL16_NEUCR (Q9P720) 60S ribosomal protein L16|
          Length = 202

 Score =  123 bits (309), Expect = 3e-28
 Identities = 55/106 (51%), Positives = 75/106 (70%)
 Frame = -1

Query: 526 WRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLGQ 347
           ++ +RGMIPHKTARG AAL RLK +EGVPPPYD+ K+MV+P AL+VLRLQPG ++C +G+
Sbjct: 83  YKAVRGMIPHKTARGAAALERLKVFEGVPPPYDKKKKMVVPQALRVLRLQPGRKFCTVGR 142

Query: 346 LSKEVGWNYADTIXXXXXXXXXXXKVSYDRRKQLAKLRVKAEKAAE 209
           LS EVGW Y D +              Y+R+K  A+   +A+K+A+
Sbjct: 143 LSSEVGWKYEDVVSRLEERRKAKGAAYYERKKVAARQLSEAKKSAK 188

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>RL13A_MOUSE (P19253) 60S ribosomal protein L13a (Transplantation antigen P198)|
           (Tum-P198 antigen)
          Length = 202

 Score =  122 bits (307), Expect = 5e-28
 Identities = 57/116 (49%), Positives = 79/116 (68%)
 Frame = -1

Query: 526 WRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLGQ 347
           WRT+RGM+PHKT RG+AAL RLK  +G+PPPYD+ KRMV+P ALKV+RL+P  ++  LG+
Sbjct: 80  WRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGR 139

Query: 346 LSKEVGWNYADTIXXXXXXXXXXXKVSYDRRKQLAKLRVKAEKAAEEKLGTQLEIL 179
           L+ EVGW Y               K+ Y ++KQ+ +LR +AEK  E+K+    E+L
Sbjct: 140 LAHEVGWKYQAVTATLEEKRKEKAKMHYRKKKQILRLRKQAEKNVEKKICKFTEVL 195

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>RL13A_SALTR (Q91487) 60S ribosomal protein L13a (Transplantation antigen P198|
           homolog) (Fragment)
          Length = 189

 Score =  119 bits (297), Expect = 7e-27
 Identities = 55/116 (47%), Positives = 75/116 (64%)
 Frame = -1

Query: 526 WRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLGQ 347
           WRT+RGM+PHKT RG+AAL RLK ++GVPPPYD+ KRMV+P ALK++RL+P  ++ LLG+
Sbjct: 67  WRTVRGMLPHKTKRGQAALERLKVFDGVPPPYDKRKRMVVPAALKIVRLKPTRKFALLGR 126

Query: 346 LSKEVGWNYADTIXXXXXXXXXXXKVSYDRRKQLAKLRVKAEKAAEEKLGTQLEIL 179
           L+ EVGW Y               K+ Y ++K + KL   AEK  E  +     +L
Sbjct: 127 LAHEVGWKYQAITATLEEKRKEKAKIRYAKKKTVTKLSKLAEKNVESTISKYTAVL 182

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>RL16B_YEAST (P26785) 60S ribosomal protein L16-B (YL15) (RP23)|
          Length = 197

 Score =  111 bits (278), Expect = 1e-24
 Identities = 52/108 (48%), Positives = 69/108 (63%)
 Frame = -1

Query: 529 LWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLG 350
           L++ IRGM+ HKTARG+AAL RLK +EG+PPPYD+ KR+V+P AL+VLRL+PG +Y  LG
Sbjct: 78  LYKAIRGMVSHKTARGKAALERLKIFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLG 137

Query: 349 QLSKEVGWNYADTIXXXXXXXXXXXKVSYDRRKQLAKLRVKAEKAAEE 206
           +LS  VGW Y D +              Y +++   K    A  AA E
Sbjct: 138 KLSTSVGWKYEDVVAKLEDKRKVRSAEYYAKKRAFTKKVSSASAAASE 185

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>RL16A_YEAST (P26784) 60S ribosomal protein L16-A (L13A) (RP22)|
          Length = 198

 Score =  110 bits (275), Expect = 2e-24
 Identities = 53/117 (45%), Positives = 72/117 (61%), Gaps = 1/117 (0%)
 Frame = -1

Query: 526 WRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLGQ 347
           ++ +RGM+ HKTARG+AAL RLK +EG+PPPYD+ KR+V+P AL+VLRL+PG +Y  LG+
Sbjct: 80  YKALRGMVSHKTARGKAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGK 139

Query: 346 LSKEVGWNYADTIXXXXXXXXXXXKVSYDRRKQLAKLRVKAE-KAAEEKLGTQLEIL 179
           LS  VGW Y D +              Y +++   K    A   AAE  +  QL  L
Sbjct: 140 LSTSVGWKYEDVVAKLEAKRKVSSAEYYAKKRAFTKKVASANATAAESDVAKQLAAL 196

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>RL13A_SPOFR (Q962U0) 60S ribosomal protein L13A|
          Length = 204

 Score =  108 bits (271), Expect = 7e-24
 Identities = 45/74 (60%), Positives = 60/74 (81%)
 Frame = -1

Query: 529 LWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLG 350
           LW+T+RGMIPHKT RG++AL RL+AY+G PPPYD  +R+V+P AL+V  L+PG +YC +G
Sbjct: 82  LWKTVRGMIPHKTERGKSALRRLRAYDGCPPPYDNRRRVVVPAALRVFCLKPGRKYCHVG 141

Query: 349 QLSKEVGWNYADTI 308
           +LS EVGW Y D +
Sbjct: 142 RLSHEVGWKYRDVV 155

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>RL16A_SCHPO (O42848) 60S ribosomal protein L16-A|
          Length = 197

 Score =  108 bits (271), Expect = 7e-24
 Identities = 51/113 (45%), Positives = 73/113 (64%)
 Frame = -1

Query: 523 RTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLGQL 344
           + +RGM+PHKTARG+AAL  L+A EG+PPP+D+ KR+V+P AL+VLRL+PG +YC +G+L
Sbjct: 83  KAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVGRL 142

Query: 343 SKEVGWNYADTIXXXXXXXXXXXKVSYDRRKQLAKLRVKAEKAAEEKLGTQLE 185
           S EVGW Y+D +              Y + K   + ++ + KAA    G   E
Sbjct: 143 SSEVGWKYSDIVSKLEERRKVKSAAFY-QAKLAKQKKIASAKAASSVNGKLAE 194

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>RL16B_SCHPO (O42991) 60S ribosomal protein L16-B|
          Length = 197

 Score =  107 bits (268), Expect = 2e-23
 Identities = 51/113 (45%), Positives = 75/113 (66%)
 Frame = -1

Query: 523 RTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLGQL 344
           + +RGM+PHKTARG+AAL  L+A EG+PPP+D+ KR+V+P AL+VLRL+PG +YC +G+L
Sbjct: 83  KAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVGRL 142

Query: 343 SKEVGWNYADTIXXXXXXXXXXXKVSYDRRKQLAKLRVKAEKAAEEKLGTQLE 185
           S EVGW Y D +               +RRK  +    +A+ A ++K+ +  E
Sbjct: 143 SSEVGWKYNDIVAKLE-----------ERRKVKSAAFYQAKLAKQKKIASAKE 184

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>RL13A_DROME (Q9VNE9) 60S ribosomal protein L13A|
          Length = 205

 Score =  107 bits (267), Expect = 2e-23
 Identities = 51/110 (46%), Positives = 74/110 (67%), Gaps = 4/110 (3%)
 Frame = -1

Query: 526 WRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLGQ 347
           ++ +RGMIPHKT RG+AALARL+ ++G+P PYD+ +R+V+P A++VL L+   +YC +G+
Sbjct: 83  YKAVRGMIPHKTKRGQAALARLRVFDGIPSPYDKRRRVVVPIAMRVLTLRSDRKYCQVGR 142

Query: 346 LSKEVGWNYADTIXXXXXXXXXXXKVSYDRRKQLAKLRVKAE----KAAE 209
           LS EVGW+Y D I           +V+    ++L KL VKA     KAAE
Sbjct: 143 LSHEVGWHYQDVIKSLERKRKAKLRVTLKHNRELKKLTVKARENIAKAAE 192

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>RL13A_CHOPR (Q8MUR4) 60S ribosomal protein L13A|
          Length = 204

 Score =  105 bits (261), Expect = 1e-22
 Identities = 43/74 (58%), Positives = 59/74 (79%)
 Frame = -1

Query: 529 LWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLG 350
           LW+T+RGMIPHKT RG+ AL RL++Y+G PPPYD  +R+V+P AL+V  L+PG +YC +G
Sbjct: 82  LWKTVRGMIPHKTERGKDALRRLRSYDGCPPPYDNRRRVVVPAALRVFCLKPGRKYCHVG 141

Query: 349 QLSKEVGWNYADTI 308
           +LS EVGW Y + +
Sbjct: 142 RLSHEVGWKYREVV 155

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>RL13A_CAEEL (Q27389) 60S ribosomal protein L13a|
          Length = 202

 Score =  105 bits (261), Expect = 1e-22
 Identities = 49/121 (40%), Positives = 74/121 (61%)
 Frame = -1

Query: 526 WRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLGQ 347
           WRT+RGM+PHKT RG  AL  L+AYEGVP  Y +TK +  P A +  RLQP  ++C++G+
Sbjct: 82  WRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQKTKSLHAPSASR-FRLQPRRKFCVVGR 140

Query: 346 LSKEVGWNYADTIXXXXXXXXXXXKVSYDRRKQLAKLRVKAEKAAEEKLGTQLEILAPIK 167
           LS EVGW + D +              ++++K++ KL V+A+K A  K+    +I+  + 
Sbjct: 141 LSHEVGWQFQDVVAKLEAKRKVKGAAYFEQKKKMDKLAVQAKKNAAPKIAQYQKIIEALG 200

Query: 166 Y 164
           Y
Sbjct: 201 Y 201

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>RL16C_SCHPO (O43004) 60S ribosomal protein L16-C|
          Length = 197

 Score = 99.4 bits (246), Expect = 5e-21
 Identities = 40/72 (55%), Positives = 56/72 (77%)
 Frame = -1

Query: 523 RTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLGQL 344
           + +RGM+PHKT RG  AL  L+A EG+PPP+D+ KR+V+P AL+VLRL+P  +YC +G+L
Sbjct: 83  KAVRGMLPHKTTRGNIALKNLQALEGIPPPFDKQKRLVVPAALRVLRLKPSRKYCTIGRL 142

Query: 343 SKEVGWNYADTI 308
           S EVGW Y + +
Sbjct: 143 SSEVGWKYKNIV 154

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>RL13A_PIG (Q95307) 60S ribosomal protein L13a (Fragment)|
          Length = 137

 Score = 88.2 bits (217), Expect = 1e-17
 Identities = 38/61 (62%), Positives = 51/61 (83%)
 Frame = -1

Query: 526 WRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLGQ 347
           WRT+RGM+PHKT RG+AAL RLK ++G+PPPYD+ KRMV+P ALKV+RL+   ++  LG+
Sbjct: 77  WRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKLTGKFXYLGR 136

Query: 346 L 344
           L
Sbjct: 137 L 137

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>RLSX_METTH (O26146) Fused L13/S9 ribosomal protein [Includes: 50S ribosomal|
           protein L13P; 30S ribosomal protein S9P]
          Length = 282

 Score = 45.4 bits (106), Expect = 9e-05
 Identities = 25/65 (38%), Positives = 40/65 (61%)
 Frame = -1

Query: 523 RTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLGQL 344
           RT+RGM+P+K ++G  A   LKAY G+P  +   + + IPDA K   ++ G     LG++
Sbjct: 80  RTVRGMLPYKKSKGREAFKGLKAYVGIPREFKDEEMVEIPDA-KAGSIKKGME---LGEI 135

Query: 343 SKEVG 329
           S+ +G
Sbjct: 136 SELLG 140

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>RL13_PYRHO (O59300) 50S ribosomal protein L13P|
          Length = 142

 Score = 45.4 bits (106), Expect = 9e-05
 Identities = 27/68 (39%), Positives = 39/68 (57%)
 Frame = -1

Query: 523 RTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLGQL 344
           RTIRGM+P KT RG  A  RLK Y G+P  +   +   I +A  V RL    +Y  +G++
Sbjct: 77  RTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETIVEA-HVSRLS-RPKYVTVGEV 134

Query: 343 SKEVGWNY 320
           +K +G  +
Sbjct: 135 AKFLGGKF 142

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>RL13_PYRAB (Q9V196) 50S ribosomal protein L13P|
          Length = 142

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 27/68 (39%), Positives = 39/68 (57%)
 Frame = -1

Query: 523 RTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLGQL 344
           RTIRGM+P KT RG  A  RLK Y G+P  +   +   I +A  V RL    +Y  +G++
Sbjct: 77  RTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFKDKQLETIVEA-HVSRLS-RPKYVTVGEV 134

Query: 343 SKEVGWNY 320
           +K +G  +
Sbjct: 135 AKFLGGKF 142

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>RL13_SULSO (P95991) 50S ribosomal protein L13P|
          Length = 149

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 26/67 (38%), Positives = 42/67 (62%)
 Frame = -1

Query: 523 RTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLGQL 344
           RTIRGM+P K+++G   L  +K Y GVP  ++  + +  PD+  V RL+   +Y  +  +
Sbjct: 86  RTIRGMLP-KSSKGRRMLKNVKIYVGVPKEFEGRQFIKFPDS-DVSRLK--GKYVTVEVV 141

Query: 343 SKEVGWN 323
           SKE+GW+
Sbjct: 142 SKELGWS 148

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>RL13_AERPE (Q9YB50) 50S ribosomal protein L13P|
          Length = 155

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 25/64 (39%), Positives = 36/64 (56%)
 Frame = -1

Query: 517 IRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLGQLSK 338
           +RGM+P   ARG  ALARL+ Y GVP      + +  P+A    RL     Y  LG +++
Sbjct: 89  VRGMLPKNKARGRRALARLRVYVGVPDELKGREFVRFPEA-DASRL--SSHYIELGAVAR 145

Query: 337 EVGW 326
           ++GW
Sbjct: 146 QLGW 149

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>RL13_ARCFU (O29137) 50S ribosomal protein L13P|
          Length = 156

 Score = 42.7 bits (99), Expect = 6e-04
 Identities = 23/66 (34%), Positives = 39/66 (59%)
 Frame = -1

Query: 523 RTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLGQL 344
           RT+RGM+P K++RG  A  RL+ + GVP      +   I DAL + ++    +Y  L ++
Sbjct: 89  RTVRGMLPWKSSRGRDAYRRLRVFMGVPEELQGREFEKIEDAL-LEKVSKTDKYVTLAEV 147

Query: 343 SKEVGW 326
           S+ +G+
Sbjct: 148 SRYLGF 153

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>RL13_HALMA (P29198) 50S ribosomal protein L13P (Hmal13)|
          Length = 145

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 25/67 (37%), Positives = 37/67 (55%)
 Frame = -1

Query: 523 RTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLGQL 344
           RTIRGM+PHK  RG  A   ++ Y G   PYD    ++  D   + RL    ++  LG++
Sbjct: 81  RTIRGMLPHKKQRGREAFESVRVYLG--NPYDEDGEVL--DGTSLDRLS-NIKFVTLGEI 135

Query: 343 SKEVGWN 323
           S+ +G N
Sbjct: 136 SETLGAN 142

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>RL13_METJA (P54023) 50S ribosomal protein L13P|
          Length = 137

 Score = 36.6 bits (83), Expect = 0.044
 Identities = 23/67 (34%), Positives = 34/67 (50%)
 Frame = -1

Query: 529 LWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLG 350
           L RTIR M+P+K  +G  A  R+K Y G P      K + + +  K+       +Y  L 
Sbjct: 76  LRRTIRKMLPYKKPKGREAFKRVKVYVGNP------KNLTVDE--KISHKLNTTKYITLA 127

Query: 349 QLSKEVG 329
           +LSK +G
Sbjct: 128 ELSKHLG 134

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>CO9A2_CHICK (P12108) Collagen alpha-2(IX) chain precursor|
          Length = 677

 Score = 34.3 bits (77), Expect = 0.22
 Identities = 28/97 (28%), Positives = 38/97 (39%), Gaps = 2/97 (2%)
 Frame = -3

Query: 458 GVRGCAAAVRQDQAHGHSRRAQGSEAAAWAQVLPPGPALQGGRMELRRHHXXXXXXXXXX 279
           G RG      +    GH +  +GS         PPGP    G   L+ H           
Sbjct: 144 GPRGPPGPPGKPGPPGHIQGVEGSADFLCPTNCPPGPKGPQGLQGLKGHRG--------- 194

Query: 278 XXGLVRQEKAAGEAPRQGREGSRGEVGNSA--GDPGP 174
                 +  A GE  +QG++G +G+VG S   G PGP
Sbjct: 195 ------RPGALGEPGQQGKQGPKGDVGVSGEQGVPGP 225

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>CCDC9_HUMAN (Q9Y3X0) Coiled-coil domain-containing protein 9|
          Length = 531

 Score = 33.9 bits (76), Expect = 0.28
 Identities = 29/101 (28%), Positives = 39/101 (38%)
 Frame = -3

Query: 482 RGRACQAQGVRGCAAAVRQDQAHGHSRRAQGSEAAAWAQVLPPGPALQGGRMELRRHHXX 303
           +GR+ + + V     AV  ++  G SRR+ G+     A      P  QGGR  + R    
Sbjct: 57  KGRSVEKENV-----AVESEKNLGPSRRSPGTPRPPGASKGGRTPPQQGGRAGMGRASRS 111

Query: 302 XXXXXXXXXXGLVRQEKAAGEAPRQGREGSRGEVGNSAGDP 180
                          E + GE PR G  G RG  G   G P
Sbjct: 112 --------------WEGSPGEQPRGGGAGGRGRRGRGRGSP 138

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>RL13_HALSA (Q9HQJ3) 50S ribosomal protein L13P|
          Length = 145

 Score = 33.5 bits (75), Expect = 0.37
 Identities = 23/67 (34%), Positives = 34/67 (50%)
 Frame = -1

Query: 523 RTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLGQL 344
           R IRGM+P+K   G  AL  ++ Y G P   D      + D   + RL    R+  L ++
Sbjct: 81  RAIRGMLPYKQDDGREALDSVRVYVGNPMDEDGD----VLDGTSLDRLST-IRFVTLSEV 135

Query: 343 SKEVGWN 323
           S+E+G N
Sbjct: 136 SEELGAN 142

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>Y2023_MYCBO (P64918) Hypothetical protein Mb2023|
          Length = 537

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +2

Query: 368 VPRLQPQNLERVGNDHALGPVVRRRHTLVRLEPGKRGLAPRGLVRNHTADGAPE 529
           V  L+ + L R+ +   +G V R   T + L+ G     P  L  + TADGAP+
Sbjct: 348 VSHLELEQLRRIRDIVRMGHVQRIEPTTIVLDGGSVPATPTALYIDCTADGAPQ 401

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>Y2000_MYCTU (P64917) Hypothetical protein Rv2000/MT2056|
          Length = 537

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +2

Query: 368 VPRLQPQNLERVGNDHALGPVVRRRHTLVRLEPGKRGLAPRGLVRNHTADGAPE 529
           V  L+ + L R+ +   +G V R   T + L+ G     P  L  + TADGAP+
Sbjct: 348 VSHLELEQLRRIRDIVRMGHVQRIEPTTIVLDGGSVPATPTALYIDCTADGAPQ 401

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>PO3F1_HUMAN (Q03052) POU domain, class 3, transcription factor 1|
           (Octamer-binding transcription factor 6) (Oct-6)
           (POU-domain transcription factor SCIP)
          Length = 448

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = -3

Query: 485 GRGRACQAQGVRGC-AAAVRQDQAHGHSRRAQGSEAAAWAQVLPPGPALQGG 333
           G GRA    G  G  A  V Q  AH  +  AQGS A      + P P   GG
Sbjct: 96  GTGRADDGGGGGGFHARLVHQGAAHAGAAWAQGSTAHHLGPAMSPSPGASGG 147

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>MADCA_MOUSE (Q61826) Mucosal addressin cell adhesion molecule 1 precursor|
           (MAdCAM-1) (mMAdCAM-1)
          Length = 405

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = -3

Query: 425 DQAHGHSRRAQGSEAAAWAQVLPPGPALQG 336
           D A  H R A    A AW  VLPPGP ++G
Sbjct: 311 DLATYHKREAG---AQAWLSVLPPGPMVEG 337

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>CAPG_HUMAN (P40121) Macrophage capping protein (Actin-regulatory protein|
           CAP-G)
          Length = 348

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
 Frame = -3

Query: 485 GRGRACQAQGVRGCAAAVRQDQAHGHSRR---AQGSEAAAWAQVLPPGPALQGGRME 324
           G+    +    R  A A+R  +  G ++      G E A   QVL P PAL+ G  E
Sbjct: 180 GKSNILERNKARDLALAIRDSERQGKAQVEIVTDGEEPAEMIQVLGPKPALKEGNPE 236

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>CAPG_MOUSE (P24452) Macrophage capping protein (Myc basic motif homolog 1)|
           (Actin-capping protein GCAP39)
          Length = 352

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
 Frame = -3

Query: 485 GRGRACQAQGVRGCAAAVRQDQAHGHSRR---AQGSEAAAWAQVLPPGPALQGGRME 324
           G+    +    R  A A+R  +  G ++      G E A   QVL P PAL+ G  E
Sbjct: 182 GKSNILERNKARDLALAIRDSERQGKAQVEIITDGEEPAEMIQVLGPKPALKEGNPE 238

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>DEND_RAT (P50617) Dendrin|
          Length = 653

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = -3

Query: 449 GCAAAVRQDQAHGHSRRAQGSEAAAWAQVLPPGP---ALQGGRMELRRH 312
           GCA +V+  +A G  RRA G     WA+   PGP   AL+     +RRH
Sbjct: 524 GCAGSVKGPEAAGVPRRAGG----GWART--PGPYAGALREAVSRIRRH 566


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,516,904
Number of Sequences: 219361
Number of extensions: 1225094
Number of successful extensions: 3907
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 3732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3902
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4027872870
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result