ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags27l14 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complete sequence Length = 114996 Score = 63.9 bits (32), Expect = 2e-07 Identities = 61/72 (84%) Strand = Plus / Minus Query: 85 ggatgtatctaaaactgaaatncgtctagatncattcatttntatgacangcattttcgg 144 ||||||||||| |||| |||| ||||||||| ||| ||||| ||||||| | || ||| Sbjct: 69866 ggatgtatctagaactaaaatacgtctagatacatccatttctatgacaaataattccgg 69807 Query: 145 acggagggagta 156 |||||||||||| Sbjct: 69806 acggagggagta 69795
>gb|AF459085.1| Hordeum vulgare SNF2P (Snf2P) gene, complete cds Length = 7963 Score = 63.9 bits (32), Expect = 2e-07 Identities = 61/72 (84%) Strand = Plus / Minus Query: 85 ggatgtatctaaaactgaaatncgtctagatncattcatttntatgacangcattttcgg 144 ||||||||||| |||| |||| ||||||||| ||| ||||| ||||||| | || ||| Sbjct: 1818 ggatgtatctagaactaaaatacgtctagatacatccatttctatgacaaataattccgg 1759 Query: 145 acggagggagta 156 |||||||||||| Sbjct: 1758 acggagggagta 1747
>gb|AF548379.1| Aegilops tauschii isoamylase gene, complete cds Length = 9643 Score = 63.9 bits (32), Expect = 2e-07 Identities = 71/86 (82%) Strand = Plus / Minus Query: 71 aaatngataaaganggatgtatctaaaactgaaatncgtctagatncattcatttntatg 130 |||| |||||| | ||||||||||| |||| |||| ||||||||| ||| ||||| | | Sbjct: 6057 aaatggataaaaatggatgtatctagaactaaaatacgtctagatacatccatttctccg 5998 Query: 131 acangcattttcggacggagggagta 156 ||| | |||||||||||||||||| Sbjct: 5997 acaaataatttcggacggagggagta 5972 Score = 40.1 bits (20), Expect = 3.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 42 ctccntccgtccgaaattatttg 64 |||| |||||||||||||||||| Sbjct: 5974 ctccctccgtccgaaattatttg 5996
>gb|AY643843.1|AY643842S2 Hordeum vulgare subsp. vulgare clones BAC 519K7 and 799C8 hardness locus region Length = 129099 Score = 61.9 bits (31), Expect = 8e-07 Identities = 60/71 (84%) Strand = Plus / Plus Query: 86 gatgtatctaaaactgaaatncgtctagatncattcatttntatgacangcattttcgga 145 |||||||||| |||| |||| |||||||| ||||||||| || |||| | |||| || | Sbjct: 31235 gatgtatctataactaaaataagtctagatacattcatttttaggacaagtatttccgaa 31294 Query: 146 cggagggagta 156 ||||||||||| Sbjct: 31295 cggagggagta 31305
>gb|AF325196.1|AF325196 Triticum aestivum PST19 (Pst19), LRR19 (Lrr19), TAK19-1 (Tak19-1), and LRK19 (Lrk19) genes, complete cds Length = 35872 Score = 56.0 bits (28), Expect = 5e-05 Identities = 70/86 (81%) Strand = Plus / Minus Query: 71 aaatngataaaganggatgtatctaaaactgaaatncgtctagatncattcatttntatg 130 |||| |||||| | ||||||||||| || | |||| | ||||||| |||||||| | | Sbjct: 33709 aaatggataaaaatggatgtatctagaattaaaatacatctagatagattcatttctccg 33650 Query: 131 acangcattttcggacggagggagta 156 ||| | |||| ||||||||||||||| Sbjct: 33649 acaagtatttccggacggagggagta 33624
>gb|AY368673.1| Triticum turgidum HMW-glutenin locus, complete sequence Length = 285506 Score = 50.1 bits (25), Expect = 0.003 Identities = 65/80 (81%) Strand = Plus / Plus Query: 77 ataaaganggatgtatctaaaactgaaatncgtctagatncattcatttntatgacangc 136 ||||| | ||||||||||| |||| |||| ||||||| | ||| |||| | ||||| | Sbjct: 196633 ataaaaatggatgtatctagaactaaaatacgtctaggtacatccattcctctgacaagt 196692 Query: 137 attttcggacggagggagta 156 |||| ||||| ||||||||| Sbjct: 196693 atttccggacagagggagta 196712
>gb|BT009606.1| Triticum aestivum clone wre1n.pk0091.d5:fis, full insert mRNA sequence Length = 1469 Score = 50.1 bits (25), Expect = 0.003 Identities = 67/83 (80%) Strand = Plus / Minus Query: 43 tccntccgtccgaaattatttgngacacaaatngataaaganggatgtatctaaaactga 102 ||| ||||| |||||||| | | ||| |||| |||||| | ||||||||||| || | | Sbjct: 1317 tccctccgttcgaaattactcgtcacaaaaatggataaaaatggatgtatctacaattaa 1258 Query: 103 aatncgtctagatncattcattt 125 ||| | ||||||| ||||||||| Sbjct: 1257 aatacatctagatacattcattt 1235
>gb|AY533103.1| Triticum aestivum beta-expansin 1 (EXPB1) gene, complete cds Length = 1149 Score = 48.1 bits (24), Expect = 0.012 Identities = 34/38 (89%) Strand = Plus / Minus Query: 119 ttcatttntatgacangcattttcggacggagggagta 156 ||||||| |||||| | |||||||||||||||||||| Sbjct: 240 ttcattttgatgacaagtattttcggacggagggagta 203
>gb|AF022725.1|AF022725 Hordeum vulgare limit dextrinase (HvLD99) gene, complete cds Length = 12034 Score = 48.1 bits (24), Expect = 0.012 Identities = 94/120 (78%) Strand = Plus / Minus Query: 37 acatgctccntccgtccgaaattatttgngacacaaatngataaaganggatgtatctaa 96 |||| |||| |||||||| ||||| ||| ||| |||| ||||| | ||||||||||| Sbjct: 11630 acatactccctccgtccggaattacttgtcacataaatgtataaaaatggatgtatctag 11571 Query: 97 aactgaaatncgtctagatncattcatttntatgacangcattttcggacggagggagta 156 || | ||| | ||||||| ||| |||| ||||||| | |||||| | |||||||||| Sbjct: 11570 aattataatacatctagatacatacattcctatgacaagtattttcagttggagggagta 11511
>gb|AF122049.1|AF122049 Hordeum vulgare tissue-type aleurone limit dextrinase mRNA, complete cds Length = 3429 Score = 48.1 bits (24), Expect = 0.012 Identities = 94/120 (78%) Strand = Plus / Minus Query: 37 acatgctccntccgtccgaaattatttgngacacaaatngataaaganggatgtatctaa 96 |||| |||| |||||||| ||||| ||| ||| |||| ||||| | ||||||||||| Sbjct: 3302 acatactccctccgtccggaattacttgtcacataaatgtataaaaatggatgtatctag 3243 Query: 97 aactgaaatncgtctagatncattcatttntatgacangcattttcggacggagggagta 156 || | ||| | ||||||| ||| |||| ||||||| | |||||| | |||||||||| Sbjct: 3242 aattataatacatctagatacatacattcctatgacaagtattttcagttggagggagta 3183
>gb|AY491681.1| Triticum monococcum DV92 BAC 109N23, complete sequence Length = 101101 Score = 46.1 bits (23), Expect = 0.048 Identities = 36/41 (87%) Strand = Plus / Plus Query: 85 ggatgtatctaaaactgaaatncgtctagatncattcattt 125 ||||||||||| |||| |||| | ||||||| ||||||||| Sbjct: 88791 ggatgtatctagaactaaaatacatctagatacattcattt 88831
>gb|AC091274.11| Mus musculus chromosome 5, clone RP23-149A1, complete sequence Length = 212532 Score = 44.1 bits (22), Expect = 0.19 Identities = 22/22 (100%) Strand = Plus / Minus Query: 193 ggaaaaacccaacacacacaat 214 |||||||||||||||||||||| Sbjct: 29319 ggaaaaacccaacacacacaat 29298
>emb|CR626933.1| Triticum turgidum Length = 25216 Score = 44.1 bits (22), Expect = 0.19 Identities = 27/29 (93%) Strand = Plus / Plus Query: 128 atgacangcattttcggacggagggagta 156 |||||| | |||||||||||||||||||| Sbjct: 8896 atgacaagtattttcggacggagggagta 8924
>emb|CR626929.1| Triticum aestivum Length = 20745 Score = 44.1 bits (22), Expect = 0.19 Identities = 27/29 (93%) Strand = Plus / Plus Query: 128 atgacangcattttcggacggagggagta 156 |||||| | |||||||||||||||||||| Sbjct: 11610 atgacaagtattttcggacggagggagta 11638
>gb|AY951945.1| Triticum monococcum TmBAC 60J11 FR-Am2 locus, genomic sequence Length = 103866 Score = 44.1 bits (22), Expect = 0.19 Identities = 27/29 (93%) Strand = Plus / Minus Query: 128 atgacangcattttcggacggagggagta 156 |||||| | |||||||||||||||||||| Sbjct: 37409 atgacaagtattttcggacggagggagta 37381 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 attttcggacggagggagta 156 |||||||||||||||||||| Sbjct: 93481 attttcggacggagggagta 93462
>gb|AY963808.1| Triticum aestivum putative S-locus receptor kinase gene, partial cds; and mitochondrial Mn-superoxide dismutase (MnSOD) gene, complete cds, nuclear gene encoding mitochondrial protein Length = 11304 Score = 44.1 bits (22), Expect = 0.19 Identities = 27/29 (93%) Strand = Plus / Minus Query: 128 atgacangcattttcggacggagggagta 156 |||||| | |||||||||||||||||||| Sbjct: 10752 atgacaagtattttcggacggagggagta 10724
>gb|AY235469.1| Triticum aestivum nonfunctional FCA-like protein (Fca-2C9) gene, exons 8 through 15, partial sequence Length = 3511 Score = 42.1 bits (21), Expect = 0.75 Identities = 64/80 (80%) Strand = Plus / Plus Query: 77 ataaaganggatgtatctaaaactgaaatncgtctagatncattcatttntatgacangc 136 ||||| | ||||||||||| |||| |||| | ||||||| ||| |||| |||| | Sbjct: 710 ataaaaatggatgtatctagaactaaaatacatctagatacatccattcccccgacaagt 769 Query: 137 attttcggacggagggagta 156 |||| ||||||||||||||| Sbjct: 770 atttccggacggagggagta 789
>gb|AY235468.1| Triticum aestivum FCA-like protein (Fca-2A3) gene, exons 8 through 15, partial cds Length = 3601 Score = 42.1 bits (21), Expect = 0.75 Identities = 64/80 (80%) Strand = Plus / Plus Query: 77 ataaaganggatgtatctaaaactgaaatncgtctagatncattcatttntatgacangc 136 ||||| | ||||||||||| |||| |||| | ||||||| ||| |||| |||| | Sbjct: 752 ataaaaatggatgtatctagaactaaaatacatctagatacatccattcccccgacaagt 811 Query: 137 attttcggacggagggagta 156 |||| ||||||||||||||| Sbjct: 812 atttccggacggagggagta 831
>gb|AY235467.1| Triticum aestivum FCA-like protein (Fca-1C5) gene, exons 8 through 15, partial cds Length = 3508 Score = 42.1 bits (21), Expect = 0.75 Identities = 64/80 (80%) Strand = Plus / Plus Query: 77 ataaaganggatgtatctaaaactgaaatncgtctagatncattcatttntatgacangc 136 ||||| | ||||||||||| |||| |||| | ||||||| ||| |||| |||| | Sbjct: 693 ataaaaatggatgtatctagaactaaaatacatctagatacatccattcccccgacaagt 752 Query: 137 attttcggacggagggagta 156 |||| ||||||||||||||| Sbjct: 753 atttccggacggagggagta 772
>gb|AY235466.1| Triticum aestivum FCA-like protein (Fca-1F10) gene, exons 8 through 15, partial cds Length = 3502 Score = 42.1 bits (21), Expect = 0.75 Identities = 64/80 (80%) Strand = Plus / Plus Query: 77 ataaaganggatgtatctaaaactgaaatncgtctagatncattcatttntatgacangc 136 ||||| | ||||||||||| |||| |||| | ||||||| ||| |||| |||| | Sbjct: 697 ataaaaatggatgtatctagaactaaaatacatctagatacatccattcccccgacaagt 756 Query: 137 attttcggacggagggagta 156 |||| ||||||||||||||| Sbjct: 757 atttccggacggagggagta 776
>gb|AY235464.1| Triticum aestivum FCA-like protein (Fca-5A3) gene, exons 8 through 15, partial cds Length = 3593 Score = 42.1 bits (21), Expect = 0.75 Identities = 64/80 (80%) Strand = Plus / Plus Query: 77 ataaaganggatgtatctaaaactgaaatncgtctagatncattcatttntatgacangc 136 ||||| | ||||||||||| |||| |||| | ||||||| ||| |||| |||| | Sbjct: 755 ataaaaatggatgtatctagaactaaaatacatctagatacatccattcccccgacaagt 814 Query: 137 attttcggacggagggagta 156 |||| ||||||||||||||| Sbjct: 815 atttccggacggagggagta 834
>gb|AY235463.1| Triticum aestivum nonfunctional FCA-like protein (Fca-2E11) gene, exons 8 through 15, partial sequence Length = 3592 Score = 42.1 bits (21), Expect = 0.75 Identities = 64/80 (80%) Strand = Plus / Plus Query: 77 ataaaganggatgtatctaaaactgaaatncgtctagatncattcatttntatgacangc 136 ||||| | ||||||||||| |||| |||| | ||||||| ||| |||| |||| | Sbjct: 750 ataaaaatggatgtatctagaactaaaatacatctagatacatccattcccccgacaagt 809 Query: 137 attttcggacggagggagta 156 |||| ||||||||||||||| Sbjct: 810 atttccggacggagggagta 829
>gb|AY235462.1| Triticum aestivum FCA-like protein (Fca-4C5) gene, exons 8 through 15, partial cds Length = 3585 Score = 42.1 bits (21), Expect = 0.75 Identities = 64/80 (80%) Strand = Plus / Plus Query: 77 ataaaganggatgtatctaaaactgaaatncgtctagatncattcatttntatgacangc 136 ||||| | ||||||||||| |||| |||| | ||||||| ||| |||| |||| | Sbjct: 738 ataaaaatggatgtatctagaactaaaatacatctagatacatccattcccccgacaagt 797 Query: 137 attttcggacggagggagta 156 |||| ||||||||||||||| Sbjct: 798 atttccggacggagggagta 817
>gb|AY235461.1| Triticum aestivum FCA-like protein (Fca-1B8) gene, exons 8 through 15, partial cds Length = 3631 Score = 42.1 bits (21), Expect = 0.75 Identities = 64/80 (80%) Strand = Plus / Plus Query: 77 ataaaganggatgtatctaaaactgaaatncgtctagatncattcatttntatgacangc 136 ||||| | ||||||||||| |||| |||| | ||||||| ||| |||| |||| | Sbjct: 764 ataaaaatggatgtatctagaactaaaatacatctagatacatccattctcccgacaagt 823 Query: 137 attttcggacggagggagta 156 |||| ||||||||||||||| Sbjct: 824 atttccggacggagggagta 843
>gb|AY235448.1| Triticum aestivum FCA-like protein (Fca-2G10) gene, exons 8 through 15, partial cds Length = 3610 Score = 42.1 bits (21), Expect = 0.75 Identities = 64/80 (80%) Strand = Plus / Plus Query: 77 ataaaganggatgtatctaaaactgaaatncgtctagatncattcatttntatgacangc 136 ||||| | ||||||||||| |||| |||| | ||||||| ||| |||| |||| | Sbjct: 761 ataaaaatggatgtatctagaactaaaatacatctagatacatccattcccccgacaagt 820 Query: 137 attttcggacggagggagta 156 |||| ||||||||||||||| Sbjct: 821 atttccggacggagggagta 840
>gb|AY235447.1| Triticum aestivum FCA-like protein (Fca-5H8) gene, exons 8 through 15, partial cds Length = 3524 Score = 42.1 bits (21), Expect = 0.75 Identities = 64/80 (80%) Strand = Plus / Plus Query: 77 ataaaganggatgtatctaaaactgaaatncgtctagatncattcatttntatgacangc 136 ||||| | ||||||||||| |||| |||| | ||||||| ||| |||| |||| | Sbjct: 740 ataaaaatggatgtatctagaactaaaatacatctagatacatccattcccccgacaagt 799 Query: 137 attttcggacggagggagta 156 |||| ||||||||||||||| Sbjct: 800 atttccggacggagggagta 819
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 0.75 Identities = 24/25 (96%) Strand = Plus / Minus Query: 138 ttttcggacggagggagtaaaaagt 162 |||| |||||||||||||||||||| Sbjct: 15431188 tttttggacggagggagtaaaaagt 15431164 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 137 attttcggacggagggagtaaaaa 160 ||||| |||||||||||||||||| Sbjct: 16560080 attttgggacggagggagtaaaaa 16560057 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 attttcggacggagggagta 156 |||||||||||||||||||| Sbjct: 13563181 attttcggacggagggagta 13563162
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 0.75 Identities = 21/21 (100%) Strand = Plus / Plus Query: 136 cattttcggacggagggagta 156 ||||||||||||||||||||| Sbjct: 27356189 cattttcggacggagggagta 27356209 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 136 cattttcggacggagggagtaaaa 159 |||||| ||||||||||||||||| Sbjct: 25910440 cattttgggacggagggagtaaaa 25910463 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 attttcggacggagggagta 156 |||||||||||||||||||| Sbjct: 9883748 attttcggacggagggagta 9883767 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 attttcggacggagggagta 156 |||||||||||||||||||| Sbjct: 1145811 attttcggacggagggagta 1145792
>emb|BX832914.1|CNS0A23C Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL21ZF01 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 731 Score = 42.1 bits (21), Expect = 0.75 Identities = 21/21 (100%) Strand = Plus / Minus Query: 194 gaaaaacccaacacacacaat 214 ||||||||||||||||||||| Sbjct: 664 gaaaaacccaacacacacaat 644
>gb|DQ355219.1| Thinopyrum bessarabicum plastid acetyl-CoA carboxylase gene, partial cds; nuclear gene for plastid product Length = 1542 Score = 42.1 bits (21), Expect = 0.75 Identities = 31/35 (88%) Strand = Plus / Plus Query: 85 ggatgtatctaaaactgaaatncgtctagatncat 119 ||||||||||| |||||||| ||||||||| ||| Sbjct: 96 ggatgtatctagcactgaaatacgtctagatacat 130
>dbj|AP003635.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0686E06 Length = 150474 Score = 42.1 bits (21), Expect = 0.75 Identities = 21/21 (100%) Strand = Plus / Plus Query: 136 cattttcggacggagggagta 156 ||||||||||||||||||||| Sbjct: 99016 cattttcggacggagggagta 99036
>dbj|AP005568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1299_A11 Length = 160099 Score = 42.1 bits (21), Expect = 0.75 Identities = 24/25 (96%) Strand = Plus / Minus Query: 138 ttttcggacggagggagtaaaaagt 162 |||| |||||||||||||||||||| Sbjct: 80480 tttttggacggagggagtaaaaagt 80456
>gb|AC157507.2| Medicago truncatula chromosome 2 BAC clone mth2-78b21, complete sequence Length = 107839 Score = 42.1 bits (21), Expect = 0.75 Identities = 21/21 (100%) Strand = Plus / Minus Query: 143 ggacggagggagtaaaaagta 163 ||||||||||||||||||||| Sbjct: 1742 ggacggagggagtaaaaagta 1722
>gb|AC165307.6| Mus musculus chromosome 3, clone RP24-372I24, complete sequence Length = 136853 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 aaaaacccaacacacacaat 214 |||||||||||||||||||| Sbjct: 75018 aaaaacccaacacacacaat 75037
>gb|AC093492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0059G01, complete sequence Length = 141661 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 attttcggacggagggagta 156 |||||||||||||||||||| Sbjct: 9627 attttcggacggagggagta 9646
>gb|AY019977.1| Oryza sativa microsatellite MRG2302 containing (CT)X14, closest to marker C559, genomic sequence Length = 228 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 attttcggacggagggagta 156 |||||||||||||||||||| Sbjct: 14 attttcggacggagggagta 33
>gb|AC138197.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0055D24 map C535, complete sequence Length = 174759 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 137 attttcggacggagggagtaaaaa 160 ||||| |||||||||||||||||| Sbjct: 150458 attttgggacggagggagtaaaaa 150481
>gb|AC093493.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0072C16, complete sequence Length = 159525 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 attttcggacggagggagta 156 |||||||||||||||||||| Sbjct: 116399 attttcggacggagggagta 116418
>gb|AC171267.17| Medicago truncatula clone mth2-17i7, complete sequence Length = 108819 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 ggacggagggagtaaaaagt 162 |||||||||||||||||||| Sbjct: 27403 ggacggagggagtaaaaagt 27384
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 3.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 137 attttcggacggagggagtaaaaagtag 164 ||||| |||||||||||||| ||||||| Sbjct: 22906888 attttaggacggagggagtagaaagtag 22906915 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 attttcggacggagggagta 156 |||||||||||||||||||| Sbjct: 22883504 attttcggacggagggagta 22883523
>gb|AC098705.2| Mus musculus BAC clone RP23-1B19 from 3, complete sequence Length = 202444 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 aaaaacccaacacacacaat 214 |||||||||||||||||||| Sbjct: 11737 aaaaacccaacacacacaat 11756
>gb|AC136972.3| Oryza sativa chromosome 3 BAC OSJNBb0007E22 genomic sequence, complete sequence Length = 184783 Score = 40.1 bits (20), Expect = 3.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 137 attttcggacggagggagtaaaaagtag 164 ||||| |||||||||||||| ||||||| Sbjct: 109418 attttaggacggagggagtagaaagtag 109445 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 attttcggacggagggagta 156 |||||||||||||||||||| Sbjct: 86034 attttcggacggagggagta 86053
>gb|BC007177.1| Mus musculus cyclin L1, mRNA (cDNA clone IMAGE:3494871), complete cds Length = 4156 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 aaaaacccaacacacacaat 214 |||||||||||||||||||| Sbjct: 2998 aaaaacccaacacacacaat 2979
>gb|AC148239.7| Medicago truncatula clone mth2-5d7, complete sequence Length = 103609 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 ggacggagggagtaaaaagt 162 |||||||||||||||||||| Sbjct: 7671 ggacggagggagtaaaaagt 7690
>emb|AL606999.3|OSJN00127 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K01, complete sequence Length = 163448 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 tttcggacggagggagtaaa 158 |||||||||||||||||||| Sbjct: 33308 tttcggacggagggagtaaa 33327
>gb|AF185590.1|AF185590 Mus musculus cyclin ania-6a gene, sequence Length = 27644 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 aaaaacccaacacacacaat 214 |||||||||||||||||||| Sbjct: 22753 aaaaacccaacacacacaat 22734
>gb|AY951949.1| Triticum monococcum CRT/DRE binding factor 3 (CBF3) gene, complete cds Length = 1971 Score = 40.1 bits (20), Expect = 3.0 Identities = 33/38 (86%) Strand = Plus / Plus Query: 119 ttcatttntatgacangcattttcggacggagggagta 156 ||||||| |||||| | |||||||||||||| ||||| Sbjct: 1503 ttcattttaatgacaagtattttcggacggagagagta 1540
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 tttcggacggagggagtaaa 158 |||||||||||||||||||| Sbjct: 33821409 tttcggacggagggagtaaa 33821428
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 ttttcggacggagggagtaa 157 |||||||||||||||||||| Sbjct: 16211140 ttttcggacggagggagtaa 16211159
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 137 attttcggacggagggagtaaaaa 160 ||||| |||||||||||||||||| Sbjct: 8867769 attttgggacggagggagtaaaaa 8867746
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 137 attttcggacggagggagtaaaaa 160 ||||| |||||||||||||||||| Sbjct: 3389753 attttgggacggagggagtaaaaa 3389730
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 attttcggacggagggagta 156 |||||||||||||||||||| Sbjct: 3022383 attttcggacggagggagta 3022402
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 3.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 137 attttcggacggagggagtaaaaagtag 164 ||||| |||||||||||||| ||||||| Sbjct: 22899916 attttaggacggagggagtagaaagtag 22899943 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 attttcggacggagggagta 156 |||||||||||||||||||| Sbjct: 22876532 attttcggacggagggagta 22876551
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 attttcggacggagggagta 156 |||||||||||||||||||| Sbjct: 33481167 attttcggacggagggagta 33481148 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 attttcggacggagggagta 156 |||||||||||||||||||| Sbjct: 32878044 attttcggacggagggagta 32878025 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 attttcggacggagggagta 156 |||||||||||||||||||| Sbjct: 22680565 attttcggacggagggagta 22680546
>gb|AC104429.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0006P09, complete sequence Length = 153950 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 ttttcggacggagggagtaa 157 |||||||||||||||||||| Sbjct: 50562 ttttcggacggagggagtaa 50543
>dbj|AP005538.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0013K01 Length = 139464 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 attttcggacggagggagta 156 |||||||||||||||||||| Sbjct: 136062 attttcggacggagggagta 136043
>dbj|AP004140.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1534_E09 Length = 126209 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 attttcggacggagggagta 156 |||||||||||||||||||| Sbjct: 32785 attttcggacggagggagta 32766
>dbj|AP003457.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0660D08 Length = 146915 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 attttcggacggagggagta 156 |||||||||||||||||||| Sbjct: 122034 attttcggacggagggagta 122015
>dbj|AP005695.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0063H02 Length = 152326 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 attttcggacggagggagta 156 |||||||||||||||||||| Sbjct: 80383 attttcggacggagggagta 80402
>dbj|AP005720.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1123_B08 Length = 134028 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 137 attttcggacggagggagtaaaaa 160 ||||| |||||||||||||||||| Sbjct: 92305 attttgggacggagggagtaaaaa 92282
>dbj|AP003568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0017B12 Length = 157424 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 136 cattttcggacggagggagtaaaa 159 |||||| ||||||||||||||||| Sbjct: 65538 cattttgggacggagggagtaaaa 65561
>dbj|AP006453.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1339H09 Length = 131136 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 attttcggacggagggagta 156 |||||||||||||||||||| Sbjct: 597 attttcggacggagggagta 578
>dbj|AP007149.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, fosmid clone:OSJNOa018M17 Length = 36758 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 attttcggacggagggagta 156 |||||||||||||||||||| Sbjct: 11167 attttcggacggagggagta 11148
>dbj|AP005535.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0054K20 Length = 153584 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 attttcggacggagggagta 156 |||||||||||||||||||| Sbjct: 56042 attttcggacggagggagta 56023
>dbj|AP005644.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0056I22 Length = 147728 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 attttcggacggagggagta 156 |||||||||||||||||||| Sbjct: 128376 attttcggacggagggagta 128357
>dbj|AP005643.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0046O12 Length = 128223 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 attttcggacggagggagta 156 |||||||||||||||||||| Sbjct: 39361 attttcggacggagggagta 39342
>dbj|AP004698.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0498E12 Length = 153523 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 137 attttcggacggagggagtaaaaa 160 ||||| |||||||||||||||||| Sbjct: 23172 attttgggacggagggagtaaaaa 23149
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 137 attttcggacggagggagtaaaaa 160 ||||| |||||||||||||||||| Sbjct: 8939432 attttgggacggagggagtaaaaa 8939409
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 ttttcggacggagggagtaa 157 |||||||||||||||||||| Sbjct: 16164373 ttttcggacggagggagtaa 16164392
>emb|BX649219.2|CNS09SBY Oryza sativa chromosome 12, . BAC B1097F04 of chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 165955 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 ttttcggacggagggagtaa 157 |||||||||||||||||||| Sbjct: 32203 ttttcggacggagggagtaa 32184
>gb|L41869.1|BLYBGQ6 Hordeum vulgare L. beta-glucosidase (BGQ60) gene, complete cds Length = 4152 Score = 40.1 bits (20), Expect = 3.0 Identities = 58/72 (80%) Strand = Plus / Minus Query: 85 ggatgtatctaaaactgaaatncgtctagatncattcatttntatgacangcattttcgg 144 ||||||||||| |||| |||| | ||||||| ||| |||| | |||| | |||| ||| Sbjct: 3085 ggatgtatctataactaaaatacatctagatacatccattctttggacaagtatttccgg 3026 Query: 145 acggagggagta 156 ||| |||||||| Sbjct: 3025 acgaagggagta 3014 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,051,509 Number of Sequences: 3902068 Number of extensions: 1051509 Number of successful extensions: 34825 Number of sequences better than 10.0: 71 Number of HSP's better than 10.0 without gapping: 63 Number of HSP's successfully gapped in prelim test: 12 Number of HSP's that attempted gapping in prelim test: 33144 Number of HSP's gapped (non-prelim): 1682 length of query: 231 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 209 effective length of database: 17,147,199,772 effective search space: 3583764752348 effective search space used: 3583764752348 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
