>RL71_ARATH (P60040) 60S ribosomal protein L7-1|
          Length = 242

 Score = 87.4 bits (215), Expect = 8e-18
 Identities = 40/55 (72%), Positives = 44/55 (80%)
 Frame = -3

Query: 319 ILTVGPHFKEANNFLWPFXXXXXXXXXXXKRNHYVEGGDAGNREDYINQLVRRMN 155
           ILTVGPHFKEANNFLWPF           KRNHYVEGGDAGNRE++IN+L+RRMN
Sbjct: 188 ILTVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFINELIRRMN 242

>RL72_ARATH (P60039) 60S ribosomal protein L7-2|
          Length = 242

 Score = 87.0 bits (214), Expect = 1e-17
 Identities = 40/55 (72%), Positives = 44/55 (80%)
 Frame = -3

Query: 319 ILTVGPHFKEANNFLWPFXXXXXXXXXXXKRNHYVEGGDAGNREDYINQLVRRMN 155
           I+TVGPHFKEANNFLWPF           KRNHYVEGGDAGNRE++IN+LVRRMN
Sbjct: 188 IMTVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFINELVRRMN 242

>RL73_ARATH (Q9LHP1) 60S ribosomal protein L7-3|
          Length = 244

 Score = 87.0 bits (214), Expect = 1e-17
 Identities = 40/55 (72%), Positives = 44/55 (80%)
 Frame = -3

Query: 319 ILTVGPHFKEANNFLWPFXXXXXXXXXXXKRNHYVEGGDAGNREDYINQLVRRMN 155
           I+TVGPHFKEANNFLWPF           KRNHYVEGGDAGNRE++IN+LVRRMN
Sbjct: 190 IMTVGPHFKEANNFLWPFQLKAPLGGMKKKRNHYVEGGDAGNRENFINELVRRMN 244

>RL7_HUMAN (P18124) 60S ribosomal protein L7|
          Length = 248

 Score = 73.6 bits (179), Expect = 1e-13
 Identities = 35/55 (63%), Positives = 38/55 (69%)
 Frame = -3

Query: 319 ILTVGPHFKEANNFLWPFXXXXXXXXXXXKRNHYVEGGDAGNREDYINQLVRRMN 155
           I TVG  FKEANNFLWPF           K  H+VEGGDAGNRED IN+L+RRMN
Sbjct: 194 IYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN 248

>RL7_BOVIN (Q58DT1) 60S ribosomal protein L7|
          Length = 248

 Score = 73.6 bits (179), Expect = 1e-13
 Identities = 35/55 (63%), Positives = 38/55 (69%)
 Frame = -3

Query: 319 ILTVGPHFKEANNFLWPFXXXXXXXXXXXKRNHYVEGGDAGNREDYINQLVRRMN 155
           I TVG  FKEANNFLWPF           K  H+VEGGDAGNRED IN+L+RRMN
Sbjct: 194 IYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN 248

>RL7_MOUSE (P14148) 60S ribosomal protein L7|
          Length = 270

 Score = 73.6 bits (179), Expect = 1e-13
 Identities = 35/55 (63%), Positives = 38/55 (69%)
 Frame = -3

Query: 319 ILTVGPHFKEANNFLWPFXXXXXXXXXXXKRNHYVEGGDAGNREDYINQLVRRMN 155
           I TVG  FKEANNFLWPF           K  H+VEGGDAGNRED IN+L+RRMN
Sbjct: 216 IYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN 270

>RL7_RAT (P05426) 60S ribosomal protein L7|
          Length = 260

 Score = 73.6 bits (179), Expect = 1e-13
 Identities = 35/55 (63%), Positives = 38/55 (69%)
 Frame = -3

Query: 319 ILTVGPHFKEANNFLWPFXXXXXXXXXXXKRNHYVEGGDAGNREDYINQLVRRMN 155
           I TVG  FKEANNFLWPF           K  H+VEGGDAGNRED IN+L+RRMN
Sbjct: 206 IYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN 260

>RL7_CAEEL (O01802) 60S ribosomal protein L7|
          Length = 244

 Score = 72.4 bits (176), Expect = 3e-13
 Identities = 34/54 (62%), Positives = 37/54 (68%)
 Frame = -3

Query: 319 ILTVGPHFKEANNFLWPFXXXXXXXXXXXKRNHYVEGGDAGNREDYINQLVRRM 158
           I TVGPHFKEA NFLWPF           K NH+VEGGD GNRED IN L+R+M
Sbjct: 190 IATVGPHFKEATNFLWPFKLNNPTGGWTKKTNHFVEGGDFGNREDQINNLLRKM 243

>RL7_DROME (P32100) 60S ribosomal protein L7|
          Length = 252

 Score = 67.8 bits (164), Expect = 7e-12
 Identities = 32/54 (59%), Positives = 37/54 (68%)
 Frame = -3

Query: 319 ILTVGPHFKEANNFLWPFXXXXXXXXXXXKRNHYVEGGDAGNREDYINQLVRRM 158
           I TVGP+FK A+NFLWPF           K NHYV GGD GNRED IN+L+R+M
Sbjct: 198 IFTVGPNFKYASNFLWPFKLNTPTGGWRKKANHYVNGGDFGNREDQINRLLRKM 251

>RL7B_YEAST (Q12213) 60S ribosomal protein L7-B (L6B) (YL8B)|
          Length = 243

 Score = 67.0 bits (162), Expect = 1e-11
 Identities = 30/57 (52%), Positives = 39/57 (68%), Gaps = 2/57 (3%)
 Frame = -3

Query: 319 ILTVGPHFKEANNFLWPFXXXXXXXXXXXKR--NHYVEGGDAGNREDYINQLVRRMN 155
           I+TVGPHFK+ANNFLWPF            R   H+++GG  GNRE++IN+LV+ MN
Sbjct: 187 IITVGPHFKQANNFLWPFKLSNPSGGWGVPRKFKHFIQGGSFGNREEFINKLVKAMN 243

>RL7A_YEAST (P05737) 60S ribosomal protein L7-A (L6A) (YL8A) (RP11)|
          Length = 243

 Score = 67.0 bits (162), Expect = 1e-11
 Identities = 30/57 (52%), Positives = 39/57 (68%), Gaps = 2/57 (3%)
 Frame = -3

Query: 319 ILTVGPHFKEANNFLWPFXXXXXXXXXXXKR--NHYVEGGDAGNREDYINQLVRRMN 155
           I+TVGPHFK+ANNFLWPF            R   H+++GG  GNRE++IN+LV+ MN
Sbjct: 187 IITVGPHFKQANNFLWPFKLSNPSGGWGVPRKFKHFIQGGSFGNREEFINKLVKSMN 243

>RL7_ASHGO (Q755A7) 60S ribosomal protein L7|
          Length = 243

 Score = 66.2 bits (160), Expect = 2e-11
 Identities = 30/57 (52%), Positives = 39/57 (68%), Gaps = 2/57 (3%)
 Frame = -3

Query: 319 ILTVGPHFKEANNFLWPFXXXXXXXXXXXKR--NHYVEGGDAGNREDYINQLVRRMN 155
           I+TVGPHFK+ANNFLWPF            R   H+++GG  GNRE++IN+LV+ MN
Sbjct: 187 IITVGPHFKQANNFLWPFKLSNPSGGWGVPRKFKHFIQGGAFGNREEFINKLVKSMN 243

>RL7_NEUCR (Q7SBD5) 60S ribosomal protein L7|
          Length = 248

 Score = 65.9 bits (159), Expect = 3e-11
 Identities = 29/56 (51%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
 Frame = -3

Query: 319 ILTVGPHFKEANNFLWPFXXXXXXXXXXXKR-NHYVEGGDAGNREDYINQLVRRMN 155
           I TVGP+FK+A+NFLWPF           ++  H++EGGD GNRE++IN L+R+MN
Sbjct: 193 IYTVGPNFKQASNFLWPFKLSNPTGGFRTRKFKHFIEGGDLGNREEHINALIRQMN 248

>RL7_CANGA (Q6FSN6) 60S ribosomal protein L7|
          Length = 244

 Score = 65.1 bits (157), Expect = 4e-11
 Identities = 30/57 (52%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
 Frame = -3

Query: 319 ILTVGPHFKEANNFLWPFXXXXXXXXXXXKR--NHYVEGGDAGNREDYINQLVRRMN 155
           I+TVGPHFK+ANNFLWPF            R   H+++GG  GNRE +IN+LV+ MN
Sbjct: 188 IVTVGPHFKQANNFLWPFKLSNPSGGWGVPRKFKHFIQGGAFGNREQFINKLVKAMN 244

>RL7_DEBHA (Q6BTA4) 60S ribosomal protein L7|
          Length = 241

 Score = 65.1 bits (157), Expect = 4e-11
 Identities = 29/56 (51%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
 Frame = -3

Query: 319 ILTVGPHFKEANNFLWPFXXXXXXXXXXXKRN-HYVEGGDAGNREDYINQLVRRMN 155
           I TVGP+FK+ANNFLWPF           ++  H+++GGD GNRE++IN LV++MN
Sbjct: 186 IYTVGPNFKQANNFLWPFKLSNPNGGFRTRKFFHFIQGGDTGNREEFINALVKQMN 241

>RL7C_SCHPO (O60143) 60S ribosomal protein L7-C|
          Length = 251

 Score = 60.5 bits (145), Expect = 1e-09
 Identities = 27/55 (49%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
 Frame = -3

Query: 319 ILTVGPHFKEANNFLWPFXXXXXXXXXXXKR-NHYVEGGDAGNREDYINQLVRRM 158
           I TVGP+FK+A NF+WPF           ++  H++EGGDAG R+++IN LVR+M
Sbjct: 196 IYTVGPNFKQAANFIWPFQLSSPLGGWRDRKFKHFIEGGDAGKRDEHINSLVRKM 250

>RL7_YARLI (Q6C603) 60S ribosomal protein L7|
          Length = 250

 Score = 58.9 bits (141), Expect = 3e-09
 Identities = 28/57 (49%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
 Frame = -3

Query: 319 ILTVGPHFKEANNFLWPFXXXXXXXXXXXKR--NHYVEGGDAGNREDYINQLVRRMN 155
           I TVGP FK+A+NFLWPF           +R   HY+EGG  GNRE+ IN L++  N
Sbjct: 194 IYTVGPAFKQASNFLWPFKLSNPSGGWGVRRKFKHYIEGGSTGNREENINALIKAQN 250

>RL7B_SCHPO (P25457) 60S ribosomal protein L7-B|
          Length = 250

 Score = 58.9 bits (141), Expect = 3e-09
 Identities = 27/55 (49%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
 Frame = -3

Query: 319 ILTVGPHFKEANNFLWPFXXXXXXXXXXXKR-NHYVEGGDAGNREDYINQLVRRM 158
           I TVGP+FK+A NFLWPF           ++  H++EGGDAG R+++IN LV++M
Sbjct: 195 IYTVGPNFKQAANFLWPFKLSSPLGGWRERKFKHFIEGGDAGKRDEHINGLVQKM 249

>RL7_DICDI (P11874) 60S ribosomal protein L7|
          Length = 245

 Score = 57.8 bits (138), Expect = 7e-09
 Identities = 27/55 (49%), Positives = 33/55 (60%)
 Frame = -3

Query: 319 ILTVGPHFKEANNFLWPFXXXXXXXXXXXKRNHYVEGGDAGNREDYINQLVRRMN 155
           I T G HFK+ NN LWPF           K+  +++GGDAGNRE  IN L+ RMN
Sbjct: 191 ITTCGKHFKQVNNSLWPFKLNCPRGGFNMKKTPFLQGGDAGNREHLINNLIHRMN 245

>RL7A_SCHPO (P17937) 60S ribosomal protein L7-A|
          Length = 249

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -3

Query: 319 ILTVGPHFKEANNFLWPFXXXXXXXXXXXKR-NHYVEGGDAGNREDYINQLVRR 161
           I  VG HFKE   FLWPF           K+  H+ EG  AG   + IN+L+++
Sbjct: 194 IYNVGSHFKEVTKFLWPFTLTPVKHSLMEKKVKHFNEGRKAGYCGEEINELIKK 247

>RL7L_HUMAN (Q6DKI1) Ribosomal protein L7-like 1|
          Length = 246

 Score = 33.9 bits (76), Expect = 0.11
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = -3

Query: 307 GPHFKEANNFLWPFXXXXXXXXXXXKRNHYVEGGDAGNREDYINQLVRRMN 155
           G HF+E + FL PF           +     E G  G R + INQL+R++N
Sbjct: 196 GKHFQEISWFLCPFHLSVARHATKNRVGFLKEMGTPGYRGERINQLIRQLN 246

>RL7L_PONPY (Q5RAH8) Ribosomal protein L7-like 1|
          Length = 246

 Score = 33.5 bits (75), Expect = 0.14
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = -3

Query: 307 GPHFKEANNFLWPFXXXXXXXXXXXKRNHYVEGGDAGNREDYINQLVRRMN 155
           G HF+E + FL PF           +     E G  G R + INQL+R++N
Sbjct: 196 GKHFQEISWFLRPFHLSVARHATKNRVGFLKEMGTPGYRGERINQLIRQLN 246

>RL7_ENCCU (Q8SS93) 60S ribosomal protein L7|
          Length = 239

 Score = 32.3 bits (72), Expect = 0.31
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -3

Query: 298 FKEANNFLWPFXXXXXXXXXXXKRNH-YVEGGDAGNREDYINQLVRRM 158
           FK+ N+FL+PF           +++  + +GG  GN +D ++ L+ RM
Sbjct: 191 FKKVNSFLYPFHLSPPRGGFKGQKSKSFNDGGSVGNHQDLLSNLLERM 238

>NEST_HUMAN (P48681) Nestin|
          Length = 1618

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
 Frame = -2

Query: 305  PSLQGGQQLPVAIQAQGAAGRPQEEEEPLRRGW*RRQP*GLHQPAR------QEDELG 150
            P  +G Q+    +Q +  AG+ + E+E L  G     P GL +         +EDELG
Sbjct: 1237 PQAEGSQEASWGVQGRAEAGKVESEQEELGSG---EIPEGLQEEGEESREESEEDELG 1291

>MUTH_PHOLL (Q7N124) DNA mismatch repair protein mutH (Methyl-directed mismatch|
           repair protein)
          Length = 228

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = -2

Query: 308 WPSLQGGQQLPVAIQAQGAA---GRPQEEEEPLRRGW 207
           W  ++G +++P+A +  G+       QEEEE LRR W
Sbjct: 122 WIPVEGEREIPLAKRRVGSPLLWSPNQEEEELLRRDW 158

>ATR_ARATH (Q9FKS4) Serine/threonine-protein kinase ATR (EC 2.7.11.1)|
           (DNA-repair protein ATR) (AtATR) (Ataxia
           telangiectasia-mutated and Rad3-related homolog)
           (Rad3-like protein) (AtRAD3)
          Length = 2702

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 142 SMAPCVWKMFCLLSPLYI 89
           S  PC+WK+ CLL  L++
Sbjct: 353 SCPPCIWKIHCLLELLHL 370


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,290,612
Number of Sequences: 219361
Number of extensions: 755127
Number of successful extensions: 1477
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1467
length of database: 80,573,946
effective HSP length: 82
effective length of database: 62,586,344
effective search space used: 1502072256
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)