ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags27l07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_193093.2| Oryza sativa (japonica cultivar-group), mRNA 172 8e-40
2dbj|AK061072.1| Oryza sativa (japonica cultivar-group) cDNA clon... 172 8e-40
3gb|AY103914.1| Zea mays PCO130298 mRNA sequence 163 7e-37
4dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 135 2e-28
5dbj|AP004339.3| Oryza sativa (japonica cultivar-group) genomic D... 135 2e-28
6ref|XM_470714.1| Oryza sativa (japonica cultivar-group), mRNA 60 8e-06
7gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 60 8e-06
8gb|AC084766.8| Oryza sativa chromosome 3 BAC OSJNBb0048D20 genom... 60 8e-06
9dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 60 8e-06
10dbj|AK109412.2| Oryza sativa (japonica cultivar-group) cDNA clon... 60 8e-06
11dbj|AK068720.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 8e-06
12gb|BT019164.1| Zea mays clone Contig829.F mRNA sequence 56 1e-04
13gb|AY105580.1| Zea mays PCO127552 mRNA sequence 56 1e-04
14gb|BC055499.1| Danio rerio zgc:66127, mRNA (cDNA clone MGC:66127... 50 0.008
15ref|NM_200495.1| Danio rerio zgc:66127 (zgc:66127), mRNA 50 0.008
16ref|NM_057587.3| Drosophila melanogaster RNA-binding protein 4 C... 50 0.008
17gb|AY089457.1| Drosophila melanogaster AT27014 full insert cDNA 50 0.008
18gb|AC007646.8|AC007646 Drosophila melanogaster, chromosome 3R, r... 50 0.008
19gb|AE003701.2| Drosophila melanogaster chromosome 3R, section 39... 50 0.008
20gb|U18401.1|DMU18401 Drosophila melanogaster testis-specific-RRM... 50 0.008
21ref|NM_180361.1| Arabidopsis thaliana CP29; RNA binding AT3G5346... 48 0.030
22ref|NM_115206.2| Arabidopsis thaliana CP29; RNA binding AT3G5346... 48 0.030
23gb|AY077674.1| Arabidopsis thaliana AT3g53460/F4P12_160 mRNA, co... 48 0.030
24gb|AY039909.1| Arabidopsis thaliana AT3g53460/F4P12_160 mRNA, co... 48 0.030
25emb|BX823854.1|CNS0A6O5 Arabidopsis thaliana Full-length cDNA Co... 48 0.030
26emb|BX823838.1|CNS0A6NK Arabidopsis thaliana Full-length cDNA Co... 48 0.030
27emb|BX823223.1|CNS0A6II Arabidopsis thaliana Full-length cDNA Co... 48 0.030
28gb|AY087840.1| Arabidopsis thaliana clone 38888 mRNA, complete s... 48 0.030
29dbj|D31711.1|ATHCP29B Arabidopsis thaliana mRNA for chloroplast ... 48 0.030
30dbj|D31710.1|ATHCP29A Arabidopsis thaliana gene for chloroplast ... 48 0.030
31emb|AL132966.1|ATF4P12 Arabidopsis thaliana DNA chromosome 3, BA... 48 0.030
32gb|DQ062785.1| Drosophila simulans heterogeneous nuclear ribonuc... 44 0.47
33gb|DQ062784.1| Drosophila melanogaster heterogeneous nuclear rib... 44 0.47
34emb|X62639.1|DMHRP481 D.melanogaster mRNA for hrp48.1 44 0.47
35gb|AY128430.1| Drosophila melanogaster GH26816 full insert cDNA 44 0.47
36ref|NM_164721.1| Drosophila melanogaster Heterogeneous nuclear r... 44 0.47
37ref|NM_164720.1| Drosophila melanogaster Heterogeneous nuclear r... 44 0.47
38ref|NM_057521.3| Drosophila melanogaster Heterogeneous nuclear r... 44 0.47
39gb|AY069699.1| Drosophila melanogaster LD46853 full length cDNA 44 0.47
40gb|AC099010.1| Drosophila melanogaster, chromosome 2L, region 27... 44 0.47
41gb|AC007977.12|AC007977 Drosophila melanogaster, chromosome 2L, ... 44 0.47
42gb|AE003615.3| Drosophila melanogaster chromosome 2L, section 24... 44 0.47
43gb|AC004277.1|AC004277 Drosophila melanogaster DNA sequence (P1 ... 44 0.47
44gb|AC146594.3| Mus musculus BAC clone RP24-155O13 from chromosom... 42 1.8
45gb|S51720.1| RNA recognition motif-type RNA-binding protein {RRM... 42 1.8
46gb|AC003989.1| Homo sapiens BAC clone CTB-7J15 from 7, complete ... 40 7.3
47gb|AC142335.1| Pan troglodytes BAC clone RP43-38M15 from 7, comp... 40 7.3
48emb|AL591063.6| Human DNA sequence from clone RP11-535K1 on chro... 40 7.3
49emb|AL161788.13| Human DNA sequence from clone RP11-421B23 on ch... 40 7.3
50emb|AL157768.6| Human DNA sequence from clone RP11-481A22 on chr... 40 7.3
51emb|AL080251.23|HSDJ93P18 Human DNA sequence from clone RP1-93P1... 40 7.3
52gb|AC109811.4| Homo sapiens BAC clone RP13-539F13 from 4, comple... 40 7.3
53dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 7.3
54emb|AL160211.2|CNS01RGV Human chromosome 14 DNA sequence BAC R-1... 40 7.3
55emb|AL133239.4|CNS01DUC Human chromosome 14 DNA sequence BAC R-7... 40 7.3
56dbj|AP003159.1| Homo sapiens genomic DNA, chromosome 1p36 clone:... 40 7.3 
>ref|NM_193093.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1053

 Score =  172 bits (87), Expect = 8e-40
 Identities = 183/215 (85%)
 Strand = Plus / Minus

                                                                       
Query: 311 ggcttcgactctgccacggtaacccggatctgcctgccgtcaaggtccactccgtcgagg 370
           ||||| || ||||| || ||||| ||||||||||||||||| ||||| || ||||| || 
Sbjct: 843 ggctttgattctgcaactgtaactcggatctgcctgccgtccaggtcaacgccgtcaaga 784

                                                                       
Query: 371 tttgagatcgcattgttgacctcatcagcagagccataggtgacgaagccaaagcccctc 430
           ||||| || ||||||||||| || ||||| |||||||||||||| || ||||| ||||||
Sbjct: 783 tttgatatggcattgttgacttcttcagcggagccataggtgacaaaaccaaaacccctc 724

                                                                       
Query: 431 gacctgccgctgtcccggtcatagatgaccttagcatcaagcacctttccttgttcgctg 490
           ||||||||||| |||| ||| ||||||||||| ||||| |||||  |||| || || |||
Sbjct: 723 gacctgccgctctccctgtcgtagatgaccttggcatcgagcacggttccctgctcactg 664

                                              
Query: 491 aacaggttctcaagcgttgagttgtcaacacccca 525
           ||||||||||| || || |||||||| ||||||||
Sbjct: 663 aacaggttctcgagtgtcgagttgtcgacacccca 629
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>dbj|AK061072.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-206-D01, full
           insert sequence
          Length = 1052

 Score =  172 bits (87), Expect = 8e-40
 Identities = 183/215 (85%)
 Strand = Plus / Minus

                                                                       
Query: 311 ggcttcgactctgccacggtaacccggatctgcctgccgtcaaggtccactccgtcgagg 370
           ||||| || ||||| || ||||| ||||||||||||||||| ||||| || ||||| || 
Sbjct: 843 ggctttgattctgcaactgtaactcggatctgcctgccgtccaggtcaacgccgtcaaga 784

                                                                       
Query: 371 tttgagatcgcattgttgacctcatcagcagagccataggtgacgaagccaaagcccctc 430
           ||||| || ||||||||||| || ||||| |||||||||||||| || ||||| ||||||
Sbjct: 783 tttgatatggcattgttgacttcttcagcggagccataggtgacaaaaccaaaacccctc 724

                                                                       
Query: 431 gacctgccgctgtcccggtcatagatgaccttagcatcaagcacctttccttgttcgctg 490
           ||||||||||| |||| ||| ||||||||||| ||||| |||||  |||| || || |||
Sbjct: 723 gacctgccgctctccctgtcgtagatgaccttggcatcgagcacggttccctgctcactg 664

                                              
Query: 491 aacaggttctcaagcgttgagttgtcaacacccca 525
           ||||||||||| || || |||||||| ||||||||
Sbjct: 663 aacaggttctcgagtgtcgagttgtcgacacccca 629
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>gb|AY103914.1| Zea mays PCO130298 mRNA sequence
          Length = 1127

 Score =  163 bits (82), Expect = 7e-37
 Identities = 139/158 (87%)
 Strand = Plus / Minus

                                                                       
Query: 368 aggtttgagatcgcattgttgacctcatcagcagagccataggtgacgaagccaaagccc 427
           |||||||| || |||||||||||||| || |||||||||||||||||||| ||||| |||
Sbjct: 773 aggtttgatatggcattgttgacctcctcggcagagccataggtgacgaaaccaaacccc 714

                                                                       
Query: 428 ctcgacctgccgctgtcccggtcatagatgaccttagcatcaagcacctttccttgttcg 487
           || ||||||||||| |||| ||| ||||||||||||||||| ||||||| |||||| || 
Sbjct: 713 cttgacctgccgctatccctgtcgtagatgaccttagcatccagcacctgtccttgctca 654

                                                 
Query: 488 ctgaacaggttctcaagcgttgagttgtcaacacccca 525
           ||||| |||||||| || || ||||||||||| |||||
Sbjct: 653 ctgaataggttctccagagtcgagttgtcaacgcccca 616
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  135 bits (68), Expect = 2e-28
 Identities = 140/164 (85%)
 Strand = Plus / Minus

                                                                            
Query: 362      ccgtcgaggtttgagatcgcattgttgacctcatcagcagagccataggtgacgaagcca 421
                ||||| || ||||| || ||||||||||| || ||||| |||||||||||||| || |||
Sbjct: 26159846 ccgtcaagatttgatatggcattgttgacttcttcagcggagccataggtgacaaaacca 26159787

                                                                            
Query: 422      aagcccctcgacctgccgctgtcccggtcatagatgaccttagcatcaagcacctttcct 481
                || ||||||||||||||||| |||| ||| ||||||||||| ||||| |||||  |||| 
Sbjct: 26159786 aaacccctcgacctgccgctctccctgtcgtagatgaccttggcatcgagcacggttccc 26159727

                                                            
Query: 482      tgttcgctgaacaggttctcaagcgttgagttgtcaacacccca 525
                || || |||||||||||||| || || |||||||| ||||||||
Sbjct: 26159726 tgctcactgaacaggttctcgagtgtcgagttgtcgacacccca 26159683



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                                
Query: 311      ggcttcgactctgccacggtaacccggatctgcctgccgtcaaggtcc 358
                ||||| || ||||| || ||||| ||||||||||||||||| ||||||
Sbjct: 26160052 ggctttgattctgcaactgtaactcggatctgcctgccgtccaggtcc 26160005
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>dbj|AP004339.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0519E12
          Length = 152448

 Score =  135 bits (68), Expect = 2e-28
 Identities = 140/164 (85%)
 Strand = Plus / Minus

                                                                         
Query: 362   ccgtcgaggtttgagatcgcattgttgacctcatcagcagagccataggtgacgaagcca 421
             ||||| || ||||| || ||||||||||| || ||||| |||||||||||||| || |||
Sbjct: 51704 ccgtcaagatttgatatggcattgttgacttcttcagcggagccataggtgacaaaacca 51645

                                                                         
Query: 422   aagcccctcgacctgccgctgtcccggtcatagatgaccttagcatcaagcacctttcct 481
             || ||||||||||||||||| |||| ||| ||||||||||| ||||| |||||  |||| 
Sbjct: 51644 aaacccctcgacctgccgctctccctgtcgtagatgaccttggcatcgagcacggttccc 51585

                                                         
Query: 482   tgttcgctgaacaggttctcaagcgttgagttgtcaacacccca 525
             || || |||||||||||||| || || |||||||| ||||||||
Sbjct: 51584 tgctcactgaacaggttctcgagtgtcgagttgtcgacacccca 51541



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                             
Query: 311   ggcttcgactctgccacggtaacccggatctgcctgccgtcaaggtcc 358
             ||||| || ||||| || ||||| ||||||||||||||||| ||||||
Sbjct: 51910 ggctttgattctgcaactgtaactcggatctgcctgccgtccaggtcc 51863
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>ref|XM_470714.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 798

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 63/74 (85%)
 Strand = Plus / Minus

                                                                       
Query: 389 acctcatcagcagagccataggtgacgaagccaaagcccctcgacctgccgctgtcccgg 448
           ||||| ||||| || ||||| ||||| || ||||| ||||| |||||||| || |||| |
Sbjct: 701 acctcttcagcggaaccatacgtgacaaaaccaaatccccttgacctgccactctccctg 642

                         
Query: 449 tcatagatgacctt 462
           ||||||||||||||
Sbjct: 641 tcatagatgacctt 628
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 63/74 (85%)
 Strand = Plus / Plus

                                                                            
Query: 389      acctcatcagcagagccataggtgacgaagccaaagcccctcgacctgccgctgtcccgg 448
                ||||| ||||| || ||||| ||||| || ||||| ||||| |||||||| || |||| |
Sbjct: 14705325 acctcttcagcggaaccatacgtgacaaaaccaaatccccttgacctgccactctccctg 14705384

                              
Query: 449      tcatagatgacctt 462
                ||||||||||||||
Sbjct: 14705385 tcatagatgacctt 14705398
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>gb|AC084766.8| Oryza sativa chromosome 3 BAC OSJNBb0048D20 genomic sequence, complete
             sequence
          Length = 130306

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 63/74 (85%)
 Strand = Plus / Plus

                                                                         
Query: 389   acctcatcagcagagccataggtgacgaagccaaagcccctcgacctgccgctgtcccgg 448
             ||||| ||||| || ||||| ||||| || ||||| ||||| |||||||| || |||| |
Sbjct: 44237 acctcttcagcggaaccatacgtgacaaaaccaaatccccttgacctgccactctccctg 44296

                           
Query: 449   tcatagatgacctt 462
             ||||||||||||||
Sbjct: 44297 tcatagatgacctt 44310
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 63/74 (85%)
 Strand = Plus / Plus

                                                                            
Query: 389      acctcatcagcagagccataggtgacgaagccaaagcccctcgacctgccgctgtcccgg 448
                ||||| ||||| || ||||| ||||| || ||||| ||||| |||||||| || |||| |
Sbjct: 14699859 acctcttcagcggaaccatacgtgacaaaaccaaatccccttgacctgccactctccctg 14699918

                              
Query: 449      tcatagatgacctt 462
                ||||||||||||||
Sbjct: 14699919 tcatagatgacctt 14699932
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>dbj|AK109412.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-G07, full
           insert sequence
          Length = 1112

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 63/74 (85%)
 Strand = Plus / Minus

                                                                       
Query: 389 acctcatcagcagagccataggtgacgaagccaaagcccctcgacctgccgctgtcccgg 448
           ||||| ||||| || ||||| ||||| || ||||| ||||| |||||||| || |||| |
Sbjct: 784 acctcttcagcggaaccatacgtgacaaaaccaaatccccttgacctgccactctccctg 725

                         
Query: 449 tcatagatgacctt 462
           ||||||||||||||
Sbjct: 724 tcatagatgacctt 711
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>dbj|AK068720.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169L09, full
           insert sequence
          Length = 1172

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 63/74 (85%)
 Strand = Plus / Minus

                                                                       
Query: 389 acctcatcagcagagccataggtgacgaagccaaagcccctcgacctgccgctgtcccgg 448
           ||||| ||||| || ||||| ||||| || ||||| ||||| |||||||| || |||| |
Sbjct: 792 acctcttcagcggaaccatacgtgacaaaaccaaatccccttgacctgccactctccctg 733

                         
Query: 449 tcatagatgacctt 462
           ||||||||||||||
Sbjct: 732 tcatagatgacctt 719
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>gb|BT019164.1| Zea mays clone Contig829.F mRNA sequence
          Length = 1109

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 175/224 (78%)
 Strand = Plus / Plus

                                                                       
Query: 311 ggcttcgactctgccacggtaacccggatctgcctgccgtcaaggtccactccgtcgagg 370
           |||||||||||||| || ||||| |||||||| |||||||| | |||  | || ||||| 
Sbjct: 297 ggcttcgactctgctaccgtaacacggatctgtctgccgtccaagtcagcgccatcgaga 356

                                                                       
Query: 371 tttgagatcgcattgttgacctcatcagcagagccataggtgacgaagccaaagcccctc 430
           || || || ||||| |  ||||| || || || || || ||||| || ||||| ||||| 
Sbjct: 357 ttagatattgcattctcaacctcttcggcggaaccgtacgtgacaaaaccaaaccccctt 416

                                                                       
Query: 431 gacctgccgctgtcccggtcatagatgaccttagcatcaagcacctttccttgttcgctg 490
           ||||| || || |||| ||||||||||| | | || || || ||||  ||||| || |||
Sbjct: 417 gaccttccactctccctgtcatagatgatccttgcttccagtacctcaccttgctcactg 476

                                                       
Query: 491 aacaggttctcaagcgttgagttgtcaacaccccaggataggtt 534
           ||||||||  | || | ||| |||||||| |||||||| |||||
Sbjct: 477 aacaggtttgcgagagctgaattgtcaactccccaggaaaggtt 520
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>gb|AY105580.1| Zea mays PCO127552 mRNA sequence
          Length = 1133

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 175/224 (78%)
 Strand = Plus / Minus

                                                                       
Query: 311 ggcttcgactctgccacggtaacccggatctgcctgccgtcaaggtccactccgtcgagg 370
           |||||||||||||| || ||||| |||||||| |||||||| | |||  | || ||||| 
Sbjct: 834 ggcttcgactctgctaccgtaacacggatctgtctgccgtccaagtcagcgccatcgaga 775

                                                                       
Query: 371 tttgagatcgcattgttgacctcatcagcagagccataggtgacgaagccaaagcccctc 430
           || || || ||||| |  ||||| || || || || || ||||| || ||||| ||||| 
Sbjct: 774 ttagatattgcattctcaacctcttcggcggaaccgtacgtgacaaaaccaaaccccctt 715

                                                                       
Query: 431 gacctgccgctgtcccggtcatagatgaccttagcatcaagcacctttccttgttcgctg 490
           ||||| || || |||| ||||||||||| | | || || || ||||  ||||| || |||
Sbjct: 714 gaccttccactctccctgtcatagatgatccttgcttccagtacctcaccttgctcactg 655

                                                       
Query: 491 aacaggttctcaagcgttgagttgtcaacaccccaggataggtt 534
           ||||||||  | || | ||| |||||||| |||||||| |||||
Sbjct: 654 aacaggtttgcgagagctgaattgtcaactccccaggaaaggtt 611
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>gb|BC055499.1| Danio rerio zgc:66127, mRNA (cDNA clone MGC:66127 IMAGE:2642049),
           complete cds
          Length = 1513

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 407 taggtgacgaagccaaagcccctcgacct 435
           ||||||||||||||||| |||||||||||
Sbjct: 209 taggtgacgaagccaaatcccctcgacct 181
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>ref|NM_200495.1| Danio rerio zgc:66127 (zgc:66127), mRNA
          Length = 1513

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 407 taggtgacgaagccaaagcccctcgacct 435
           ||||||||||||||||| |||||||||||
Sbjct: 209 taggtgacgaagccaaatcccctcgacct 181
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>ref|NM_057587.3| Drosophila melanogaster RNA-binding protein 4 CG9654-RA (Rbp4),
           mRNA
          Length = 1518

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 405 cataggtgacgaagccaaagcccct 429
           |||||||||||||||||||||||||
Sbjct: 331 cataggtgacgaagccaaagcccct 307
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>gb|AY089457.1| Drosophila melanogaster AT27014 full insert cDNA
          Length = 1499

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 405 cataggtgacgaagccaaagcccct 429
           |||||||||||||||||||||||||
Sbjct: 297 cataggtgacgaagccaaagcccct 273
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>gb|AC007646.8|AC007646 Drosophila melanogaster, chromosome 3R, region 87F-87F, BAC clone
             BACR03J04, complete sequence
          Length = 179454

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                      
Query: 405   cataggtgacgaagccaaagcccct 429
             |||||||||||||||||||||||||
Sbjct: 74385 cataggtgacgaagccaaagcccct 74409
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>gb|AE003701.2| Drosophila melanogaster chromosome 3R, section 39 of 118 of the
             complete sequence
          Length = 208368

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                      
Query: 405   cataggtgacgaagccaaagcccct 429
             |||||||||||||||||||||||||
Sbjct: 55459 cataggtgacgaagccaaagcccct 55483
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>gb|U18401.1|DMU18401 Drosophila melanogaster testis-specific-RRM-protein (Tsr) gene,
           complete cds
          Length = 1833

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 405 cataggtgacgaagccaaagcccct 429
           |||||||||||||||||||||||||
Sbjct: 370 cataggtgacgaagccaaagcccct 346
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>ref|NM_180361.1| Arabidopsis thaliana CP29; RNA binding AT3G53460 (CP29) transcript
           variant AT3G53460.2 mRNA, complete cds
          Length = 1157

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                       
Query: 437 ccgctgtcccggtcatagatgaccttagcatcaagcacctttccttgttcgctgaacagg 496
           |||||||||| ||| ||||| ||| |||| ||||  ||||||||||| ||| | |||| |
Sbjct: 942 ccgctgtccctgtcgtagataaccctagcttcaactacctttccttgctcgttaaacaag 883

                   
Query: 497 ttctcaag 504
           ||||||||
Sbjct: 882 ttctcaag 875
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>ref|NM_115206.2| Arabidopsis thaliana CP29; RNA binding AT3G53460 (CP29) transcript
           variant AT3G53460.1 mRNA, complete cds
          Length = 1548

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                       
Query: 437 ccgctgtcccggtcatagatgaccttagcatcaagcacctttccttgttcgctgaacagg 496
           |||||||||| ||| ||||| ||| |||| ||||  ||||||||||| ||| | |||| |
Sbjct: 966 ccgctgtccctgtcgtagataaccctagcttcaactacctttccttgctcgttaaacaag 907

                   
Query: 497 ttctcaag 504
           ||||||||
Sbjct: 906 ttctcaag 899
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>gb|AY077674.1| Arabidopsis thaliana AT3g53460/F4P12_160 mRNA, complete cds
          Length = 1029

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                       
Query: 437 ccgctgtcccggtcatagatgaccttagcatcaagcacctttccttgttcgctgaacagg 496
           |||||||||| ||| ||||| ||| |||| ||||  ||||||||||| ||| | |||| |
Sbjct: 884 ccgctgtccctgtcgtagataaccctagcttcaactacctttccttgctcgttaaacaag 825

                   
Query: 497 ttctcaag 504
           ||||||||
Sbjct: 824 ttctcaag 817
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>gb|AY039909.1| Arabidopsis thaliana AT3g53460/F4P12_160 mRNA, complete cds
          Length = 1549

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                       
Query: 437 ccgctgtcccggtcatagatgaccttagcatcaagcacctttccttgttcgctgaacagg 496
           |||||||||| ||| ||||| ||| |||| ||||  ||||||||||| ||| | |||| |
Sbjct: 980 ccgctgtccctgtcgtagataaccctagcttcaactacctttccttgctcgttaaacaag 921

                   
Query: 497 ttctcaag 504
           ||||||||
Sbjct: 920 ttctcaag 913
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>emb|BX823854.1|CNS0A6O5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS83ZG08 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1450

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                       
Query: 437 ccgctgtcccggtcatagatgaccttagcatcaagcacctttccttgttcgctgaacagg 496
           |||||||||| ||| ||||| ||| |||| ||||  ||||||||||| ||| | |||| |
Sbjct: 953 ccgctgtccctgtcgtagataaccctagcttcaactacctttccttgctcgttaaacaag 894

                   
Query: 497 ttctcaag 504
           ||||||||
Sbjct: 893 ttctcaag 886
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>emb|BX823838.1|CNS0A6NK Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS81ZC03 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1477

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                       
Query: 437 ccgctgtcccggtcatagatgaccttagcatcaagcacctttccttgttcgctgaacagg 496
           |||||||||| ||| ||||| ||| |||| ||||  ||||||||||| ||| | |||| |
Sbjct: 932 ccgctgtccctgtcgtagataaccctagcttcaactacctttccttgctcgttaaacaag 873

                   
Query: 497 ttctcaag 504
           ||||||||
Sbjct: 872 ttctcaag 865
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>emb|BX823223.1|CNS0A6II Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS12ZF07 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1427

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                       
Query: 437 ccgctgtcccggtcatagatgaccttagcatcaagcacctttccttgttcgctgaacagg 496
           |||||||||| ||| ||||| ||| |||| ||||  ||||||||||| ||| | |||| |
Sbjct: 951 ccgctgtccctgtcgtagataaccctagcttcaactacctttccttgctcgttaaacaag 892

                   
Query: 497 ttctcaag 504
           ||||||||
Sbjct: 891 ttctcaag 884
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>gb|AY087840.1| Arabidopsis thaliana clone 38888 mRNA, complete sequence
          Length = 1496

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                       
Query: 437 ccgctgtcccggtcatagatgaccttagcatcaagcacctttccttgttcgctgaacagg 496
           |||||||||| ||| ||||| ||| |||| ||||  ||||||||||| ||| | |||| |
Sbjct: 966 ccgctgtccctgtcgtagataaccctagcttcaactacctttccttgctcgttaaacaag 907

                   
Query: 497 ttctcaag 504
           ||||||||
Sbjct: 906 ttctcaag 899
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>dbj|D31711.1|ATHCP29B Arabidopsis thaliana mRNA for chloroplast RNA-binding protein cp29,
           partial cds
          Length = 1051

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                       
Query: 437 ccgctgtcccggtcatagatgaccttagcatcaagcacctttccttgttcgctgaacagg 496
           |||||||||| ||| ||||| ||| |||| ||||  ||||||||||| ||| | |||| |
Sbjct: 836 ccgctgtccctgtcgtagataaccctagcttcaactacctttccttgctcgttaaacaag 777

                   
Query: 497 ttctcaag 504
           ||||||||
Sbjct: 776 ttctcaag 769
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>dbj|D31710.1|ATHCP29A Arabidopsis thaliana gene for chloroplast RNA-binding protein cp29,
            complete cds (exon1, exon2, exon3, exon4)
          Length = 4032

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                        
Query: 437  ccgctgtcccggtcatagatgaccttagcatcaagcacctttccttgttcgctgaacagg 496
            |||||||||| ||| ||||| ||| |||| ||||  ||||||||||| ||| | |||| |
Sbjct: 1947 ccgctgtccctgtcgtagataaccctagcttcaactacctttccttgctcgttaaacaag 1888

                    
Query: 497  ttctcaag 504
            ||||||||
Sbjct: 1887 ttctcaag 1880
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>emb|AL132966.1|ATF4P12 Arabidopsis thaliana DNA chromosome 3, BAC clone F4P12
          Length = 144628

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                         
Query: 437   ccgctgtcccggtcatagatgaccttagcatcaagcacctttccttgttcgctgaacagg 496
             |||||||||| ||| ||||| ||| |||| ||||  ||||||||||| ||| | |||| |
Sbjct: 60652 ccgctgtccctgtcgtagataaccctagcttcaactacctttccttgctcgttaaacaag 60711

                     
Query: 497   ttctcaag 504
             ||||||||
Sbjct: 60712 ttctcaag 60719
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>gb|DQ062785.1| Drosophila simulans heterogeneous nuclear ribonucleoprotein
           (Hrb27-C) mRNA, partial cds
          Length = 1263

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 408 aggtgacgaagccaaagcccctcgacctgccgct 441
           |||| |||||||||||||| | ||||||||||||
Sbjct: 163 aggtaacgaagccaaagccgcgcgacctgccgct 130
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>gb|DQ062784.1| Drosophila melanogaster heterogeneous nuclear ribonucleoprotein
           (Hrb27-C) mRNA, partial cds
          Length = 1263

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 408 aggtgacgaagccaaagcccctcgacctgccgct 441
           |||| |||||||||||||| | ||||||||||||
Sbjct: 163 aggtaacgaagccaaagccgcgcgacctgccgct 130
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>emb|X62639.1|DMHRP481 D.melanogaster mRNA for hrp48.1
          Length = 1708

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 408 aggtgacgaagccaaagcccctcgacctgccgct 441
           |||| |||||||||||||| | ||||||||||||
Sbjct: 249 aggtaacgaagccaaagccgcgcgacctgccgct 216
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>gb|AY128430.1| Drosophila melanogaster GH26816 full insert cDNA
          Length = 3199

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 408 aggtgacgaagccaaagcccctcgacctgccgct 441
           |||| |||||||||||||| | ||||||||||||
Sbjct: 720 aggtaacgaagccaaagccgcgcgacctgccgct 687
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>ref|NM_164721.1| Drosophila melanogaster Heterogeneous nuclear ribonucleoprotein at
           27C CG10377-RC, transcript variant C (Hrb27C), mRNA
          Length = 2306

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 408 aggtgacgaagccaaagcccctcgacctgccgct 441
           |||| |||||||||||||| | ||||||||||||
Sbjct: 536 aggtaacgaagccaaagccgcgcgacctgccgct 503
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>ref|NM_164720.1| Drosophila melanogaster Heterogeneous nuclear ribonucleoprotein at
           27C CG10377-RB, transcript variant B (Hrb27C), mRNA
          Length = 2284

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 408 aggtgacgaagccaaagcccctcgacctgccgct 441
           |||| |||||||||||||| | ||||||||||||
Sbjct: 514 aggtaacgaagccaaagccgcgcgacctgccgct 481
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>ref|NM_057521.3| Drosophila melanogaster Heterogeneous nuclear ribonucleoprotein at
           27C CG10377-RA, transcript variant A (Hrb27C), mRNA
          Length = 2303

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 408 aggtgacgaagccaaagcccctcgacctgccgct 441
           |||| |||||||||||||| | ||||||||||||
Sbjct: 533 aggtaacgaagccaaagccgcgcgacctgccgct 500
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>gb|AY069699.1| Drosophila melanogaster LD46853 full length cDNA
          Length = 2181

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 408 aggtgacgaagccaaagcccctcgacctgccgct 441
           |||| |||||||||||||| | ||||||||||||
Sbjct: 454 aggtaacgaagccaaagccgcgcgacctgccgct 421
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>gb|AC099010.1| Drosophila melanogaster, chromosome 2L, region 27B-27C, BAC clone
             BACR20B21, complete sequence
          Length = 166512

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 408   aggtgacgaagccaaagcccctcgacctgccgct 441
             |||| |||||||||||||| | ||||||||||||
Sbjct: 48756 aggtaacgaagccaaagccgcgcgacctgccgct 48789
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>gb|AC007977.12|AC007977 Drosophila melanogaster, chromosome 2L, region 27C-27C, BAC clone
             BACR13J07, complete sequence
          Length = 174287

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                               
Query: 408   aggtgacgaagccaaagcccctcgacctgccgct 441
             |||| |||||||||||||| | ||||||||||||
Sbjct: 30930 aggtaacgaagccaaagccgcgcgacctgccgct 30897
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>gb|AE003615.3| Drosophila melanogaster chromosome 2L, section 24 of 83 of the complete
              sequence
          Length = 270751

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                
Query: 408    aggtgacgaagccaaagcccctcgacctgccgct 441
              |||| |||||||||||||| | ||||||||||||
Sbjct: 167424 aggtaacgaagccaaagccgcgcgacctgccgct 167391
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>gb|AC004277.1|AC004277 Drosophila melanogaster DNA sequence (P1 DS01321 (D143)), complete
            sequence
          Length = 82849

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                              
Query: 408  aggtgacgaagccaaagcccctcgacctgccgct 441
            |||| |||||||||||||| | ||||||||||||
Sbjct: 6832 aggtaacgaagccaaagccgcgcgacctgccgct 6865
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>gb|AC146594.3| Mus musculus BAC clone RP24-155O13 from chromosome 14, complete
             sequence
          Length = 172361

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 465   catcaagcacctttccttgtt 485
             |||||||||||||||||||||
Sbjct: 30846 catcaagcacctttccttgtt 30826
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>gb|S51720.1| RNA recognition motif-type RNA-binding protein {RRM7 clone}
           [Drosophila melanogaster, mRNA Partial, 132 nt]
          Length = 132

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 413 acgaagccaaagcccctcgacctgccgct 441
           |||||||||||||| | ||||||||||||
Sbjct: 131 acgaagccaaagccgcgcgacctgccgct 103
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>gb|AC003989.1| Homo sapiens BAC clone CTB-7J15 from 7, complete sequence
          Length = 118103

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 34    acagcatcaacaaacattca 53
             ||||||||||||||||||||
Sbjct: 16233 acagcatcaacaaacattca 16252
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>gb|AC142335.1| Pan troglodytes BAC clone RP43-38M15 from 7, complete sequence
          Length = 181138

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 34     acagcatcaacaaacattca 53
              ||||||||||||||||||||
Sbjct: 150105 acagcatcaacaaacattca 150124
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>emb|AL591063.6| Human DNA sequence from clone RP11-535K1 on chromosome 6, complete
             sequence
          Length = 100426

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 118   atttctactttttctatcaa 137
             ||||||||||||||||||||
Sbjct: 77454 atttctactttttctatcaa 77473
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>emb|AL161788.13| Human DNA sequence from clone RP11-421B23 on chromosome 9 Contains a
              novel pseudogene and a pseudogene similar to part of
              ribosomal protein S3A (RPS3A), complete sequence
          Length = 170460

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 216    gaaaatagtagtagaaacta 235
              ||||||||||||||||||||
Sbjct: 134178 gaaaatagtagtagaaacta 134197
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>emb|AL157768.6| Human DNA sequence from clone RP11-481A22 on chromosome 13, complete
              sequence
          Length = 145603

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 114    caaaatttctactttttcta 133
              ||||||||||||||||||||
Sbjct: 119456 caaaatttctactttttcta 119437
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>emb|AL080251.23|HSDJ93P18 Human DNA sequence from clone RP1-93P18 on chromosome 1p35.2-36.23
             Contains the 5' end of the ALDH4A1 gene for aldehyde
             dehydrogenase 4 family, member A1, a novel gene and a CpG
             island, complete sequence
          Length = 103216

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 185   ttcacttcccagtctctctcatca 208
             |||||||||| |||||||||||||
Sbjct: 47385 ttcacttccctgtctctctcatca 47408
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>gb|AC109811.4| Homo sapiens BAC clone RP13-539F13 from 4, complete sequence
          Length = 93967

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 103   aatgactttgacaaaatttctactttttctat 134
             |||||||||||||||||  |||| ||||||||
Sbjct: 77105 aatgactttgacaaaatagctacattttctat 77136
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 349     gtcaaggtccactccgtcga 368
               ||||||||||||||||||||
Sbjct: 1577044 gtcaaggtccactccgtcga 1577063
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>emb|AL160211.2|CNS01RGV Human chromosome 14 DNA sequence BAC R-134J10 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 164514

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 512   ttgtcaacaccccaggatag 531
             ||||||||||||||||||||
Sbjct: 10194 ttgtcaacaccccaggatag 10175
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>emb|AL133239.4|CNS01DUC Human chromosome 14 DNA sequence BAC R-71I8 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 131637

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 512   ttgtcaacaccccaggatag 531
             ||||||||||||||||||||
Sbjct: 95326 ttgtcaacaccccaggatag 95307
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>dbj|AP003159.1| Homo sapiens genomic DNA, chromosome 1p36 clone:1024F16, complete
             sequence
          Length = 113733

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 185   ttcacttcccagtctctctcatca 208
             |||||||||| |||||||||||||
Sbjct: 48505 ttcacttccctgtctctctcatca 48528


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,161,910
Number of Sequences: 3902068
Number of extensions: 4161910
Number of successful extensions: 88026
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87756
Number of HSP's gapped (non-prelim): 269
length of query: 539
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 516
effective length of database: 17,143,297,704
effective search space: 8845941615264
effective search space used: 8845941615264
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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