>YODT_BACSU (O34662) Probable aminotransferase yodT (EC 2.6.-.-)|
          Length = 444

 Score = 38.9 bits (89), Expect = 0.006
 Identities = 18/49 (36%), Positives = 33/49 (67%), Gaps = 8/49 (16%)
 Frame = -3

Query: 449 KRGMLVRVA--------GDSIMMSPPLTMTLGEVDELVSIYGEAMKATE 327
           KRG++V  +        GD+++++PP T++ GE++EL+SI+ E + A E
Sbjct: 390 KRGLIVYPSKAGIDSGEGDAVIIAPPFTISDGEMEELISIFSETVAAVE 438

>BIOA_BACSU (P53555) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase|
           (EC 2.6.1.62) (7,8-diamino-pelargonic acid
           aminotransferase) (DAPA aminotransferase)
          Length = 448

 Score = 32.7 bits (73), Expect = 0.43
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -3

Query: 443 GMLVRVAGDSIMMSPPLTMTLGEVDELVSIYGEAM 339
           GML R  GD I   PPL  T  E+ E+V+I  +A+
Sbjct: 406 GMLTRPLGDVIAFLPPLASTAEELSEMVAIMKQAI 440

>ARGD_LISIN (Q92BC0) Acetylornithine aminotransferase (EC 2.6.1.11) (ACOAT)|
          Length = 384

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 13/32 (40%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
 Frame = -3

Query: 446 RGMLVRVAGDSIM-MSPPLTMTLGEVDELVSI 354
           +G+L+  AG +I+ + PPLT++  E+D+ +SI
Sbjct: 340 KGLLILTAGPNILRILPPLTVSYAEIDQAISI 371

>ARGD_STRMU (Q59928) Acetylornithine aminotransferase (EC 2.6.1.11) (ACOAT)|
          Length = 379

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 14/38 (36%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = -3

Query: 446 RGMLVRVAGDSIM-MSPPLTMTLGEVDELVSIYGEAMK 336
           RG++V  AG +++ + PPLT+T  E+D+ + I  E  +
Sbjct: 339 RGLIVLTAGTNVIRLLPPLTLTKDEIDQGIMILQEVFE 376

>Y4UB_RHISN (Q53196) Probable aminotransferase y4uB (EC 2.6.1.-)|
          Length = 467

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
 Frame = -3

Query: 446 RGMLVRVA--GDSIMMSPPLTMTLGEVDELVSIYGEAMKA 333
           RG++ R    GD +  +PPL  T  EVDE+V++  +A+++
Sbjct: 416 RGLIARAMPHGDILGFAPPLVTTKEEVDEIVAMAEKAVRS 455

>SYV_BORBR (Q7WHM6) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 960

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = +1

Query: 19  LNAFSTRDYQSGNHIDGFIWQIIYTCKNGPKSILCGIMSSITV 147
           L A S  + QS   +DG +W I+Y   +GP++I+    +++T+
Sbjct: 198 LTAVSDLEVQS-EEVDGHMWHILYPFVDGPQTIIDAEGNTVTL 239

>POLG_EBHSG (Q96725) Genome polyprotein [Contains: p16; p23; Helicase (2C-like|
           protein) (P2C); 3A-like protein; Viral genome-linked
           protein (VPg); Thiol protease P3C (EC 3.4.22.-);
           RNA-directed RNA polymerase (EC 2.7.7.48); Capsid
           protein VP60, subgenomic
          Length = 2334

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 25/98 (25%), Positives = 45/98 (45%)
 Frame = +1

Query: 55  NHIDGFIWQIIYTCKNGPKSILCGIMSSITVALVKEILRHFAHQEQCSFRSGAPLLPPDS 234
           N + GF+  +I   +      L G++ S TV LV + ++ F  +  C+      LL    
Sbjct: 306 NDLPGFLTTLIRFME------LYGVVQS-TVNLVVDAIKSFWDRVMCATERCCDLLKRLF 358

Query: 235 EELFCTHPRLPPPSCCIFV*FFFDLSSATLPSVAFIAS 348
           ++   + P  P   C IF+ F F +    LP+ + I++
Sbjct: 359 DKFEDSVPTGPTAGCLIFMSFVFSVIVGYLPNNSVIST 396

>CUTL2_HUMAN (O14529) Homeobox protein cut-like 2 (Homeobox protein Cux-2)|
           (Cut-like 2)
          Length = 1424

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 395 LTMTLGEVDELVSIYGEAMKATEGRVAELKSK 300
           L   LGE +E + +   A+KAT+  + EL+ K
Sbjct: 134 LAARLGEAEEKIKVLHSALKATQAELLELRRK 165

>ABCA2_RAT (Q9ESR9) ATP-binding cassette sub-family A member 2 (ATP-binding|
            cassette transporter 2) (ATP-binding cassette 2)
          Length = 2434

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 262  LPPPSCCIFV*FFFDLSSATLP-SVAFIASPYMLTSSSTSP 381
            L P +CCI + F FDL + T P +   + S ++L   S +P
Sbjct: 1849 LVPATCCIIILFVFDLPAYTSPTNFPAVLSLFLLYGWSITP 1889

>RPT3_ARATH (Q9FMF5) Root phototropism protein 3 (Non-phototropic hypocotyl|
           protein 3)
          Length = 745

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 145 VALVKEILRHFAHQEQCSFRSGAPLLPPDSEELFCTHPR 261
           V LV+ +L HF  QEQ    S + + P  S+ ++   PR
Sbjct: 446 VDLVQRLLEHFLVQEQTEGSSPSRMSPSPSQSMYADIPR 484

>ARGD_BACST (Q07907) Acetylornithine aminotransferase (EC 2.6.1.11) (ACOAT)|
          Length = 385

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -3

Query: 449 KRGMLVRVAGDSIMMSPPLTMTLGEVDELVSI 354
           + G+LV  AG +++   PL +T  E+DE V I
Sbjct: 340 ENGLLVLSAGPNVIRLLPLVVTKAEIDEAVDI 371


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,843,319
Number of Sequences: 219361
Number of extensions: 1297708
Number of successful extensions: 3920
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3919
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)