ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags27l05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VCLA_GOSHI (P09799) Vicilin GC72-A precursor (Alpha-globulin A) 35 0.12
2MST2_DROHY (Q08696) Axoneme-associated protein mst101(2) 32 1.0
3VCLB_GOSHI (P09801) Vicilin C72 precursor (Alpha-globulin B) 31 2.3
4VNCS_PAVPN (P18547) Noncapsid protein NS-1 (Nonstructural protei... 30 6.7
5VCL_THECC (Q43358) Vicilin precursor 29 8.8

>VCLA_GOSHI (P09799) Vicilin GC72-A precursor (Alpha-globulin A)|
          Length = 605

 Score = 35.4 bits (80), Expect = 0.12
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -2

Query: 587 DQSNDSCDHKCQ-HHKVPARKKQCVDECHRREHHHPSRAACERKCSHWRDPTRKE 426
           D+    C  +CQ   + P RK+QCV EC  +    P +   E K   WR+   +E
Sbjct: 119 DKQFKECQQRCQWQEQRPERKQQCVKECREQYQEDPWKGERENK---WREEEEEE 170



 Score = 30.8 bits (68), Expect = 3.0
 Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
 Frame = -2

Query: 569 CDHKCQHHKVPAR---KKQCVDECHRREHHHPSRA--ACERKCSHWRD--PTRKERCVQT 411
           C   CQ  +   R   ++ C ++  +++   P +    C+++C  W++  P RK++CV+ 
Sbjct: 87  CRQHCQQEERRLRPHCEQSCREQYEKQQQQQPDKQFKECQQRCQ-WQEQRPERKQQCVKE 145

Query: 410 C 408
           C
Sbjct: 146 C 146



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>MST2_DROHY (Q08696) Axoneme-associated protein mst101(2)|
          Length = 1391

 Score = 32.3 bits (72), Expect = 1.0
 Identities = 13/56 (23%), Positives = 26/56 (46%)
 Frame = -2

Query: 569  CDHKCQHHKVPARKKQCVDECHRREHHHPSRAACERKCSHWRDPTRKERCVQTCMR 402
            C+ + +  K  A KK+C +E  +RE     +  C       ++ T K++C +   +
Sbjct: 1112 CEERAKKEKEAAEKKRC-EEAAKREKEAAEKKKCAEAAKKEKEATEKQKCAEAAKK 1166



 Score = 31.2 bits (69), Expect = 2.3
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = -2

Query: 569  CDHKCQHHKVPARKKQCVDECHRREHHHPSRAACERKCSHWRDPTRKERCVQTCMR 402
            C+ + +  K  A KKQC +E  ++      +  CE +    ++   K+RC +   R
Sbjct: 1080 CEERAKKEKEAAEKKQC-EERAKKLKEAAEKKQCEERAKKEKEAAEKKRCEEAAKR 1134



 Score = 30.8 bits (68), Expect = 3.0
 Identities = 13/56 (23%), Positives = 26/56 (46%)
 Frame = -2

Query: 569  CDHKCQHHKVPARKKQCVDECHRREHHHPSRAACERKCSHWRDPTRKERCVQTCMR 402
            C+ + +  K  A KKQC +E  ++E     +  CE      ++   K++C +   +
Sbjct: 1096 CEERAKKLKEAAEKKQC-EERAKKEKEAAEKKRCEEAAKREKEAAEKKKCAEAAKK 1150



 Score = 29.6 bits (65), Expect = 6.7
 Identities = 13/56 (23%), Positives = 25/56 (44%)
 Frame = -2

Query: 569 CDHKCQHHKVPARKKQCVDECHRREHHHPSRAACERKCSHWRDPTRKERCVQTCMR 402
           C+   +  K  A KK+C +E  ++E     R  CE    + +    K++C +   +
Sbjct: 399 CEKAAKERKEAAEKKKC-EEAAKKEKEAAERKKCEELAKNIKKAAEKKKCKEAAKK 453



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>VCLB_GOSHI (P09801) Vicilin C72 precursor (Alpha-globulin B)|
          Length = 588

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -2

Query: 569 CDHKC-QHHKVPARKKQCVDECHRREHHHPSRAACERK 459
           C   C Q  + P RK+QCV EC  R   +P R   E +
Sbjct: 127 CQQHCHQQEQRPERKQQCVRECRERYQENPWRREREEE 164



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>VNCS_PAVPN (P18547) Noncapsid protein NS-1 (Nonstructural protein NS1)|
          Length = 660

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 565 TTSANIIKFRRGRSSAWTSATDGSIITRAGRLARGSVAI 449
           TT A +I  +RG  ++W  ATD    +    L +G V I
Sbjct: 52  TTDAEMINLQRGAETSWDQATDMEWESEIDSLTKGQVLI 90



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>VCL_THECC (Q43358) Vicilin precursor|
          Length = 525

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 10/65 (15%)
 Frame = -2

Query: 587 DQSNDSCDHKC----------QHHKVPARKKQCVDECHRREHHHPSRAACERKCSHWRDP 438
           ++  + C+ +C          Q  ++  + +QC   C  ++     +  C+RKC  W   
Sbjct: 56  EREQEQCEQRCEREYKEQQRQQEEELQRQYQQCQGRCQEQQQGQREQQQCQRKC--WEQY 113

Query: 437 TRKER 423
             +ER
Sbjct: 114 KEQER 118


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,438,740
Number of Sequences: 219361
Number of extensions: 1337340
Number of successful extensions: 3872
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3864
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5101629520
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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