ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags27l03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AB063178.1| Hordeum vulgare BBD2 mRNA for betaine aldehyde d... 799 0.0
2dbj|AB183716.1| Leymus chinensis LcBADH2 mRNA for betaine aldehy... 321 1e-84
3gb|AY050316.1| Triticum aestivum betaine-aldehyde dehydrogenase ... 309 4e-81
4gb|AY587278.1| Zea mays betaine aldehyde dehydrogenase mRNA, com... 96 1e-16
5gb|AY105412.1| Zea mays PCO110216 mRNA sequence 96 1e-16
6ref|XM_482470.1| Oryza sativa (japonica cultivar-group), mRNA 86 1e-13
7dbj|AK071221.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 1e-13
8dbj|AK060461.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 1e-13
9dbj|AB096083.1| Oryza sativa (japonica cultivar-group) BADH2 mRN... 86 1e-13
10dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 74 5e-10
11dbj|AP005537.3| Oryza sativa (japonica cultivar-group) genomic D... 74 5e-10
12dbj|AP004463.2| Oryza sativa (japonica cultivar-group) genomic D... 74 5e-10
13gb|U12195.1|SBU12195 Sorghum bicolor clone BADH1 betaine aldehyd... 74 5e-10
14dbj|AB161711.1| Zoysia tenuifolia mRNA for betaine aldehyde dehy... 46 0.10
15dbj|AB161710.1| Zoysia tenuifolia mRNA for betaine aldehyde dehy... 46 0.10
16dbj|AB161706.1| Zoysia tenuifolia mRNA for betaine aldehyde dehy... 46 0.10
17dbj|AB161705.1| Zoysia tenuifolia mRNA for betaine aldehyde dehy... 46 0.10
18dbj|AB161704.1| Zoysia tenuifolia mRNA for betaine aldehyde dehy... 46 0.10
19dbj|AB161703.1| Zoysia tenuifolia mRNA for betaine aldehyde dehy... 46 0.10
20gb|AC105459.1| Homo sapiens BAC clone RP11-115D14 from 7, comple... 44 0.41
21gb|AC146058.2| Pan troglodytes BAC clone RP43-92A10 from chromos... 44 0.41
22gb|AC147975.3| Pan troglodytes BAC clone CH251-510J15 from chrom... 44 0.41
23gb|AC166251.6| Mus musculus BAC RP23-298H20 (Roswell Park Cance... 42 1.6
24gb|AC166261.6| Mus musculus BAC RP23-343K20 (Roswell Park Cance... 42 1.6
25gb|AC148154.15| Medicago truncatula clone mth2-17a6, complete se... 42 1.6
26gb|AC127020.16| Medicago truncatula clone mth2-9p1, complete seq... 42 1.6
27gb|AC153903.5| Mus musculus 6 BAC RP23-20C5 (Roswell Park Cancer... 42 1.6
28gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome 40 6.4
29gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome 40 6.4
30gb|BC058675.1| Mus musculus jagged 1, mRNA (cDNA clone MGC:76404... 40 6.4
31gb|AC151805.20| Medicago truncatula clone mth2-59n17, complete s... 40 6.4
32ref|NM_013822.2| Mus musculus jagged 1 (Jag1), mRNA 40 6.4
33gb|AC170084.13| Medicago truncatula clone mth2-156k10, complete ... 40 6.4
34gb|AY815442.1| Schistosoma japonicum SJCHGC06407 protein mRNA, c... 40 6.4
35emb|AJ874435.1| Oryctolagus cuniculus microsatellite DNA, locus ... 40 6.4
36gb|AC132238.3| Mus musculus BAC clone RP24-532D9 from chromosome... 40 6.4
37gb|AC137693.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.4
38gb|AC143338.29| Medicago truncatula clone mth2-8d13, complete se... 40 6.4
39emb|AL390036.17| Human DNA sequence from clone RP11-356N1 on chr... 40 6.4
40emb|X04465.1|CHMPXX Marchantia polymorpha chloroplast genome DNA 40 6.4
41gb|AC112513.1| Oryza sativa chromosome 10 clone OSJNAa0029P06, c... 40 6.4
42dbj|AK137092.1| Mus musculus 12 days embryo embryonic body betwe... 40 6.4
43gb|AC090873.4| Oryza sativa chromosome 10 clone OSJNBa0029P06, c... 40 6.4
44dbj|AK078018.1| Mus musculus 11 days embryo head cDNA, RIKEN ful... 40 6.4
45dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
46dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
47dbj|AK111751.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.4
48dbj|AB087454.1| Anthoceros formosae chloroplast petA mRNA for cy... 40 6.4
49gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.4
50gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.4
51emb|AL713981.17| Mouse DNA sequence from clone RP23-173O12 on ch... 40 6.4
52emb|AL845296.4| Mouse DNA sequence from clone RP23-121B24 on chr... 40 6.4 
>dbj|AB063178.1| Hordeum vulgare BBD2 mRNA for betaine aldehyde dehydrogenase,
            complete cds
          Length = 1889

 Score =  799 bits (403), Expect = 0.0
 Identities = 414/418 (99%)
 Strand = Plus / Minus

                                                                        
Query: 60   ttttatctcaaactcgtctttaaggtaagacctagcttcctttacatcctcaatttgcgt 119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1881 ttttatctcaaactcgtctttaaggtaagacctagcttcctttacatcctcaatttgcgt 1822

                                                                        
Query: 120  agccgatgataacattcacatcatcgatatagacagcattgatataatctggggaattgt 179
            ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 1821 agccgatgataacattcacatcatcgatatagacagcattgatatagactggggaattgt 1762

                                                                        
Query: 180  tggagatattccaaacaccttaattttgcaaaataaatccttgtcacacaccctatgtcc 239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1761 tggagatattccaaacaccttaattttgcaaaataaatccttgtcacacaccctatgtcc 1702

                                                                        
Query: 240  acaaaacccatgccatttattttgcaagaaaggtccagtagtagtccatggcaaattaca 299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1701 acaaaacccatgccatttattttgcaagaaaggtccagtagtagtccatggcaaattaca 1642

                                                                        
Query: 300  tttattctcaccactacaaaggccggcacacagatttatcctgatggaacagatacaggt 359
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1641 tttattctcaccactacaaaggccggcacacagatttatcctgatggaacagatacaggt 1582

                                                                        
Query: 360  cctcgaaacagctcaattgcatcttanttagccggagccttgtaccatccccacggcgca 419
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1581 cctcgaaacagctcaattgcatcttagttagccggagccttgtaccatccccacggcgca 1522

                                                                      
Query: 420  tcagatgtgtactccgtcacctgtttgatgctcaggtagttatcaatgcccccttctc 477
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1521 tcagatgtgtactccgtcacctgcttgatgctcaggtagttatcaatgcccccttctc 1464
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>dbj|AB183716.1| Leymus chinensis LcBADH2 mRNA for betaine aldehyde dehydrogenase,
            complete cds
          Length = 1704

 Score =  321 bits (162), Expect = 1e-84
 Identities = 223/243 (91%), Gaps = 3/243 (1%)
 Strand = Plus / Minus

                                                                        
Query: 235  tgtccacaaaacccatgccatttattttgcaagaaaggtccagtagtagtccatggcaaa 294
            |||| ||||||| |||||||||||||||||||||||| | ||| ||||   |||||||||
Sbjct: 1698 tgtcaacaaaactcatgccatttattttgcaagaaagattcagcagta---catggcaaa 1642

                                                                        
Query: 295  ttacatttattctcaccactacaaaggccggcacacagatttatcctgatggaacagata 354
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1641 ttacatttattctcaccactacaaaggccggcgcacagatttatcctgatggaacagata 1582

                                                                        
Query: 355  caggtcctcgaaacagctcaattgcatcttanttagccggagccttgtaccatccccacg 414
            || ||||||||  |||||||||| ||||||| ||||||||||| ||||||||||||||||
Sbjct: 1581 caagtcctcgagccagctcaattacatcttagttagccggagctttgtaccatccccacg 1522

                                                                        
Query: 415  gcgcatcagatgtgtactccgtcacctgtttgatgctcaggtagttatcaatgccccctt 474
            |||||||||||||||||||||| || || |||||||||||||||||||| || |||||||
Sbjct: 1521 gcgcatcagatgtgtactccgtgacttgcttgatgctcaggtagttatcgatcccccctt 1462

               
Query: 475  ctc 477
            |||
Sbjct: 1461 ctc 1459
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>gb|AY050316.1| Triticum aestivum betaine-aldehyde dehydrogenase (BADH) mRNA,
            complete cds
          Length = 1726

 Score =  309 bits (156), Expect = 4e-81
 Identities = 220/240 (91%), Gaps = 5/240 (2%)
 Strand = Plus / Minus

                                                                        
Query: 238  ccacaaaacccatgccatttattttgcaagaaaggtccagtagtagtccatggcaaatta 297
            ||||||||| |||||||||||||| ||||||||||| ||| ||||   |||| |||| ||
Sbjct: 1707 ccacaaaactcatgccatttatttcgcaagaaaggttcagcagta---catgacaaacta 1651

                                                                        
Query: 298  catttattctcaccactacaaaggccggcacacagatttatcctgatggaacagatacag 357
            |||||||||  |||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 1650 catttattc--accactacaaaggccggcgcacagatttatcctgatggaacagatccag 1593

                                                                        
Query: 358  gtcctcgaaacagctcaattgcatcttanttagccggagccttgtaccatccccacggcg 417
            ||||||||| |||||||||| ||||||| ||||||||||| |||||||||||||||||||
Sbjct: 1592 gtcctcgaaccagctcaattacatcttagttagccggagctttgtaccatccccacggcg 1533

                                                                        
Query: 418  catcagatgtgtactccgtcacctgtttgatgctcaggtagttatcaatgcccccttctc 477
            ||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||
Sbjct: 1532 catcagatgtgtactccgtgacttgcttgatgctcaggtagttatcaatgcccccttctc 1473
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>gb|AY587278.1| Zea mays betaine aldehyde dehydrogenase mRNA, complete cds
          Length = 1762

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 69/76 (90%)
 Strand = Plus / Minus

                                                                        
Query: 402  taccatccccacggcgcatcagatgtgtactccgtcacctgtttgatgctcaggtagtta 461
            ||||||||||||||| |||||||  |||||||||| || || |||| |||||||||||||
Sbjct: 1511 taccatccccacggctcatcagagatgtactccgtgacttgcttgacgctcaggtagtta 1452

                            
Query: 462  tcaatgcccccttctc 477
            ||||||||||||||||
Sbjct: 1451 tcaatgcccccttctc 1436
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>gb|AY105412.1| Zea mays PCO110216 mRNA sequence
          Length = 1251

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 69/76 (90%)
 Strand = Plus / Minus

                                                                        
Query: 402  taccatccccacggcgcatcagatgtgtactccgtcacctgtttgatgctcaggtagtta 461
            ||||||||||||||| |||||||  |||||||||| || || |||| |||||||||||||
Sbjct: 1000 taccatccccacggctcatcagagatgtactccgtgacttgcttgacgctcaggtagtta 941

                            
Query: 462  tcaatgcccccttctc 477
            ||||||||||||||||
Sbjct: 940  tcaatgcccccttctc 925
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>ref|XM_482470.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1806

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 70/79 (88%)
 Strand = Plus / Minus

                                                                        
Query: 399  ttgtaccatccccacggcgcatcagatgtgtactccgtcacctgtttgatgctcaggtag 458
            |||||||||||||||||| |||| || | |||||||||||| || |||| ||| ||||||
Sbjct: 1640 ttgtaccatccccacggctcatcggaggcgtactccgtcacttgcttgacgcttaggtag 1581

                               
Query: 459  ttatcaatgcccccttctc 477
            || ||||||||||||||||
Sbjct: 1580 ttgtcaatgcccccttctc 1562
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>dbj|AK071221.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023088C02, full
            insert sequence
          Length = 1807

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 70/79 (88%)
 Strand = Plus / Minus

                                                                        
Query: 399  ttgtaccatccccacggcgcatcagatgtgtactccgtcacctgtttgatgctcaggtag 458
            |||||||||||||||||| |||| || | |||||||||||| || |||| ||| ||||||
Sbjct: 1641 ttgtaccatccccacggctcatcggaggcgtactccgtcacttgcttgacgcttaggtag 1582

                               
Query: 459  ttatcaatgcccccttctc 477
            || ||||||||||||||||
Sbjct: 1581 ttgtcaatgcccccttctc 1563
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>dbj|AK060461.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-012-B10, full
            insert sequence
          Length = 1317

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 70/79 (88%)
 Strand = Plus / Minus

                                                                        
Query: 399  ttgtaccatccccacggcgcatcagatgtgtactccgtcacctgtttgatgctcaggtag 458
            |||||||||||||||||| |||| || | |||||||||||| || |||| ||| ||||||
Sbjct: 1151 ttgtaccatccccacggctcatcggaggcgtactccgtcacttgcttgacgcttaggtag 1092

                               
Query: 459  ttatcaatgcccccttctc 477
            || ||||||||||||||||
Sbjct: 1091 ttgtcaatgcccccttctc 1073
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>dbj|AB096083.1| Oryza sativa (japonica cultivar-group) BADH2 mRNA for betaine
            aldehyde dehydrogenase, complete cds
          Length = 1512

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 70/79 (88%)
 Strand = Plus / Minus

                                                                        
Query: 399  ttgtaccatccccacggcgcatcagatgtgtactccgtcacctgtttgatgctcaggtag 458
            |||||||||||||||||| |||| || | |||||||||||| || |||| ||| ||||||
Sbjct: 1493 ttgtaccatccccacggctcatcggaggcgtactccgtcacttgcttgacgcttaggtag 1434

                               
Query: 459  ttatcaatgcccccttctc 477
            || ||||||||||||||||
Sbjct: 1433 ttgtcaatgcccccttctc 1415
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 64/73 (87%)
 Strand = Plus / Minus

                                                                            
Query: 399      ttgtaccatccccacggcgcatcagatgtgtactccgtcacctgtttgatgctcaggtag 458
                |||||||||||||||||| |||| || | |||||||||||| || |||| ||| ||||||
Sbjct: 20378568 ttgtaccatccccacggctcatcggaggcgtactccgtcacttgcttgacgcttaggtag 20378509

                             
Query: 459      ttatcaatgcccc 471
                || ||||||||||
Sbjct: 20378508 ttgtcaatgcccc 20378496
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>dbj|AP005537.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0056L09
          Length = 152910

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 64/73 (87%)
 Strand = Plus / Minus

                                                                          
Query: 399    ttgtaccatccccacggcgcatcagatgtgtactccgtcacctgtttgatgctcaggtag 458
              |||||||||||||||||| |||| || | |||||||||||| || |||| ||| ||||||
Sbjct: 126316 ttgtaccatccccacggctcatcggaggcgtactccgtcacttgcttgacgcttaggtag 126257

                           
Query: 459    ttatcaatgcccc 471
              || ||||||||||
Sbjct: 126256 ttgtcaatgcccc 126244
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>dbj|AP004463.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
            clone:P0456B03
          Length = 152973

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 64/73 (87%)
 Strand = Plus / Minus

                                                                        
Query: 399  ttgtaccatccccacggcgcatcagatgtgtactccgtcacctgtttgatgctcaggtag 458
            |||||||||||||||||| |||| || | |||||||||||| || |||| ||| ||||||
Sbjct: 9198 ttgtaccatccccacggctcatcggaggcgtactccgtcacttgcttgacgcttaggtag 9139

                         
Query: 459  ttatcaatgcccc 471
            || ||||||||||
Sbjct: 9138 ttgtcaatgcccc 9126
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>gb|U12195.1|SBU12195 Sorghum bicolor clone BADH1 betaine aldehyde dehydrogenase mRNA,
            partial cds
          Length = 1377

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 67/77 (87%)
 Strand = Plus / Minus

                                                                        
Query: 401  gtaccatccccacggcgcatcagatgtgtactccgtcacctgtttgatgctcaggtagtt 460
            |||||| ||||||  | |||||||  |||||||||| || || |||| ||||||||||||
Sbjct: 1206 gtaccaaccccacttctcatcagagatgtactccgtgacttgcttgacgctcaggtagtt 1147

                             
Query: 461  atcaatgcccccttctc 477
            |||||||||||||||||
Sbjct: 1146 atcaatgcccccttctc 1130
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>dbj|AB161711.1| Zoysia tenuifolia mRNA for betaine aldehyde dehydrogenase, partial
            cds, clone:19
          Length = 1857

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 398  cttgtaccatccccacggcgcatcagatgtgtactccgt 436
            ||||||||| ||||||||| | ||||| |||||||||||
Sbjct: 1493 cttgtaccagccccacggctcgtcagaggtgtactccgt 1455
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>dbj|AB161710.1| Zoysia tenuifolia mRNA for betaine aldehyde dehydrogenase, complete
            cds, clone:18
          Length = 1866

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 398  cttgtaccatccccacggcgcatcagatgtgtactccgt 436
            ||||||||| ||||||||| | ||||| |||||||||||
Sbjct: 1526 cttgtaccagccccacggctcgtcagaggtgtactccgt 1488
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>dbj|AB161706.1| Zoysia tenuifolia mRNA for betaine aldehyde dehydrogenase, complete
            cds, clone:8
          Length = 1818

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 398  cttgtaccatccccacggcgcatcagatgtgtactccgt 436
            ||||||||| ||||||||| | ||||| |||||||||||
Sbjct: 1520 cttgtaccagccccacggctcgtcagaggtgtactccgt 1482
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>dbj|AB161705.1| Zoysia tenuifolia mRNA for betaine aldehyde dehydrogenase, complete
            cds, clone:7
          Length = 1744

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 398  cttgtaccatccccacggcgcatcagatgtgtactccgt 436
            ||||||||| ||||||||| | ||||| |||||||||||
Sbjct: 1511 cttgtaccagccccacggctcgtcagaggtgtactccgt 1473
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>dbj|AB161704.1| Zoysia tenuifolia mRNA for betaine aldehyde dehydrogenase, complete
            cds, clone:5
          Length = 1774

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 398  cttgtaccatccccacggcgcatcagatgtgtactccgt 436
            ||||||||| ||||||||| | ||||| |||||||||||
Sbjct: 1502 cttgtaccagccccacggctcgtcagaggtgtactccgt 1464
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>dbj|AB161703.1| Zoysia tenuifolia mRNA for betaine aldehyde dehydrogenase, partial
            cds, clone:4
          Length = 1734

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 398  cttgtaccatccccacggcgcatcagatgtgtactccgt 436
            ||||||||| ||||||||| | ||||| |||||||||||
Sbjct: 1494 cttgtaccagccccacggctcgtcagaggtgtactccgt 1456
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>gb|AC105459.1| Homo sapiens BAC clone RP11-115D14 from 7, complete sequence
          Length = 146098

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 198   cttaattttgcaaaataaatcc 219
             ||||||||||||||||||||||
Sbjct: 45281 cttaattttgcaaaataaatcc 45302
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>gb|AC146058.2| Pan troglodytes BAC clone RP43-92A10 from chromosome 7, complete
             sequence
          Length = 165469

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 198   cttaattttgcaaaataaatcc 219
             ||||||||||||||||||||||
Sbjct: 93119 cttaattttgcaaaataaatcc 93098
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>gb|AC147975.3| Pan troglodytes BAC clone CH251-510J15 from chromosome 7, complete
              sequence
          Length = 258316

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 198    cttaattttgcaaaataaatcc 219
              ||||||||||||||||||||||
Sbjct: 150947 cttaattttgcaaaataaatcc 150968
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>gb|AC166251.6| Mus musculus  BAC RP23-298H20 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 187073

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 200   taattttgcaaaataaatcct 220
             |||||||||||||||||||||
Sbjct: 10809 taattttgcaaaataaatcct 10829
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>gb|AC166261.6| Mus musculus  BAC RP23-343K20 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 190585

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 200   taattttgcaaaataaatcct 220
             |||||||||||||||||||||
Sbjct: 61366 taattttgcaaaataaatcct 61346
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>gb|AC148154.15| Medicago truncatula clone mth2-17a6, complete sequence
          Length = 138465

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 191  caaacaccttaattttgcaaaataa 215
            |||||||||||||| ||||||||||
Sbjct: 6673 caaacaccttaattatgcaaaataa 6697
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>gb|AC127020.16| Medicago truncatula clone mth2-9p1, complete sequence
          Length = 127642

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 191  caaacaccttaattttgcaaaataa 215
            |||||||||||||| ||||||||||
Sbjct: 8119 caaacaccttaattatgcaaaataa 8095
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>gb|AC153903.5| Mus musculus 6 BAC RP23-20C5 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 210370

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 200    taattttgcaaaataaatcct 220
              |||||||||||||||||||||
Sbjct: 197489 taattttgcaaaataaatcct 197509
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>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome
          Length = 4222334

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 257    tattttgcaagaaaggtcca 276
              ||||||||||||||||||||
Sbjct: 431577 tattttgcaagaaaggtcca 431596
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>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome
          Length = 4222645

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 257    tattttgcaagaaaggtcca 276
              ||||||||||||||||||||
Sbjct: 431389 tattttgcaagaaaggtcca 431408
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>gb|BC058675.1| Mus musculus jagged 1, mRNA (cDNA clone MGC:76404 IMAGE:6834418),
            complete cds
          Length = 5377

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 188  ttccaaacaccttaattttg 207
            ||||||||||||||||||||
Sbjct: 4525 ttccaaacaccttaattttg 4506
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>gb|AC151805.20| Medicago truncatula clone mth2-59n17, complete sequence
          Length = 143937

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 198   cttaattttgcaaaataaatcctt 221
             |||||||||||||||| |||||||
Sbjct: 93787 cttaattttgcaaaatgaatcctt 93810
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>ref|NM_013822.2| Mus musculus jagged 1 (Jag1), mRNA
          Length = 5377

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 188  ttccaaacaccttaattttg 207
            ||||||||||||||||||||
Sbjct: 4525 ttccaaacaccttaattttg 4506
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>gb|AC170084.13| Medicago truncatula clone mth2-156k10, complete sequence
          Length = 143943

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 198   cttaattttgcaaaataaatcctt 221
             |||||||||||||||| |||||||
Sbjct: 50150 cttaattttgcaaaatgaatcctt 50127
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>gb|AY815442.1| Schistosoma japonicum SJCHGC06407 protein mRNA, complete cds
          Length = 1375

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 251 gccatttattttgcaagaaa 270
           ||||||||||||||||||||
Sbjct: 420 gccatttattttgcaagaaa 439
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>emb|AJ874435.1| Oryctolagus cuniculus microsatellite DNA, locus OCU-INRACCDDV0092,
           clone LBAB-155D01
          Length = 589

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 252 ccatttattttgcaagaaag 271
           ||||||||||||||||||||
Sbjct: 333 ccatttattttgcaagaaag 314
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>gb|AC132238.3| Mus musculus BAC clone RP24-532D9 from chromosome 2, complete sequence
          Length = 164293

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    aactcttttatctcaaactc 74
             ||||||||||||||||||||
Sbjct: 10668 aactcttttatctcaaactc 10687
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>gb|AC137693.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OJ1111_B01,
             complete sequence
          Length = 136068

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 176   ttgttggagatattccaaac 195
             ||||||||||||||||||||
Sbjct: 45492 ttgttggagatattccaaac 45473
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>gb|AC143338.29| Medicago truncatula clone mth2-8d13, complete sequence
          Length = 113939

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 130   aacattcacatcatcgatat 149
             ||||||||||||||||||||
Sbjct: 39697 aacattcacatcatcgatat 39716
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>emb|AL390036.17| Human DNA sequence from clone RP11-356N1 on chromosome 1 Contains the
             3' end of a novel gene, a novel gene, the 3' end of the
             SLC25A24 gene for solute carrier family 25 (mitochondrial
             carrier; phosphate carrier) member 24 and two CpG islands,
             complete sequence
          Length = 183037

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 160   gatataatctggggaattgttgga 183
             |||||||| |||||||||||||||
Sbjct: 44899 gatataatttggggaattgttgga 44922
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>emb|X04465.1|CHMPXX Marchantia polymorpha chloroplast genome DNA
          Length = 121024

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 329   acagatttatcctgatggaa 348
             ||||||||||||||||||||
Sbjct: 62216 acagatttatcctgatggaa 62235
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>gb|AC112513.1| Oryza sativa chromosome 10 clone OSJNAa0029P06, complete sequence
          Length = 122319

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 308   caccactacaaaggccggca 327
             ||||||||||||||||||||
Sbjct: 55103 caccactacaaaggccggca 55122
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>dbj|AK137092.1| Mus musculus 12 days embryo embryonic body between diaphragm region
            and neck cDNA, RIKEN full-length enriched library,
            clone:9430070L02 product:jagged 1, full insert sequence
          Length = 5353

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 188  ttccaaacaccttaattttg 207
            ||||||||||||||||||||
Sbjct: 4613 ttccaaacaccttaattttg 4594
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>gb|AC090873.4| Oryza sativa chromosome 10 clone OSJNBa0029P06, complete sequence
          Length = 151533

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 308    caccactacaaaggccggca 327
              ||||||||||||||||||||
Sbjct: 146636 caccactacaaaggccggca 146655
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>dbj|AK078018.1| Mus musculus 11 days embryo head cDNA, RIKEN full-length enriched
            library, clone:6230411J17 product:jagged 1, full insert
            sequence
          Length = 2255

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 188  ttccaaacaccttaattttg 207
            ||||||||||||||||||||
Sbjct: 1479 ttccaaacaccttaattttg 1460
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 176      ttgttggagatattccaaac 195
                ||||||||||||||||||||
Sbjct: 20445747 ttgttggagatattccaaac 20445766
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 308     caccactacaaaggccggca 327
               ||||||||||||||||||||
Sbjct: 2489904 caccactacaaaggccggca 2489923
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>dbj|AK111751.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050J11, full
            insert sequence
          Length = 3562

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 176  ttgttggagatattccaaac 195
            ||||||||||||||||||||
Sbjct: 1938 ttgttggagatattccaaac 1957
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>dbj|AB087454.1| Anthoceros formosae chloroplast petA mRNA for cytochrome f,
           complete cds
          Length = 1008

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 329 acagatttatcctgatggaa 348
           ||||||||||||||||||||
Sbjct: 589 acagatttatcctgatggaa 608
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 308     caccactacaaaggccggca 327
               ||||||||||||||||||||
Sbjct: 2489855 caccactacaaaggccggca 2489874
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 176      ttgttggagatattccaaac 195
                ||||||||||||||||||||
Sbjct: 20755981 ttgttggagatattccaaac 20756000
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>emb|AL713981.17| Mouse DNA sequence from clone RP23-173O12 on chromosome 2, complete
             sequence
          Length = 223609

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 188   ttccaaacaccttaattttg 207
             ||||||||||||||||||||
Sbjct: 62120 ttccaaacaccttaattttg 62139
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>emb|AL845296.4| Mouse DNA sequence from clone RP23-121B24 on chromosome 2, complete
             sequence
          Length = 203414

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    aactcttttatctcaaactc 74
             ||||||||||||||||||||
Sbjct: 51820 aactcttttatctcaaactc 51801


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,074,933
Number of Sequences: 3902068
Number of extensions: 4074933
Number of successful extensions: 74859
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74645
Number of HSP's gapped (non-prelim): 212
length of query: 477
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 455
effective length of database: 17,147,199,772
effective search space: 7801975896260
effective search space used: 7801975896260
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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