ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags27l02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|L36883.1|BLYBTH7T Hordeum vulgare thionin (BTH7) gene, comple... 218 5e-54
2gb|M19048.1|BLYTHNC Barley leaf specific thionin mRNA, complete ... 218 5e-54
3gb|M19047.1|BLYTHNB Barley leaf specific thionin mRNA, complete ... 218 5e-54
4gb|M19046.1|BLYTHNA Barley leaf specific thionin mRNA, complete ... 218 5e-54
5emb|X05590.1|HVTHIOR5 Barley mRNA for leaf-specific thionin (clo... 210 1e-51
6emb|X05589.1|HVTHIOR4 Barley mRNA for leaf-specific thionin (clo... 210 1e-51
7gb|L36882.1|BLYBTH6T Hordeum vulgare thionin (bth6) gene, comple... 163 3e-37
8emb|X05587.1|HVTHIOR2 Barley mRNA for leaf-specific thionin (clo... 163 3e-37
9emb|X05576.1|HVTHIOR1 Barley mRNA for leaf-specific thionin (clo... 155 6e-35
10emb|X05588.1|HVTHIOR3 Barley mRNA for leaf-specific thionin (clo... 155 6e-35
11emb|AJ508712.1|HVU508712 Hordeum vulgare mRNA for putative thionin 68 1e-08
12dbj|AB072341.1| Avena sativa mRNA for thionin Asthi4, complete cds 44 0.16
13gb|AC149153.3| Xenopus tropicalis clone ISB-221D20, complete seq... 42 0.64
14gb|AC004927.2| Homo sapiens PAC clone RP5-910I17 from 7, complet... 42 0.64
15gb|AC147271.3| Pan troglodytes BAC clone RP43-121F15 from chromo... 42 0.64
16dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.64
17dbj|AP005797.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.64
18dbj|AB072342.1| Avena sativa mRNA for thionin Asthi5, complete cds 42 0.64
19gb|AC115728.11| Mus musculus chromosome 5, clone RP23-31J24, com... 40 2.5
20emb|AL646095.27| Mouse DNA sequence from clone RP23-17P18 on chr... 40 2.5
21gb|AC026188.6| Homo sapiens chromosome 3 clone RP11-319I18 map 3... 40 2.5
22gb|AC154857.2| Mus musculus BAC clone RP23-16K21 from chromosome... 40 2.5
23gb|AY128102.1| Lycopersicon esculentum isolate vis1-lta small he... 40 2.5
24gb|AY128101.1| Lycopersicon esculentum isolate vis1-hta small he... 40 2.5
25gb|AC008498.3|AC008498 Homo sapiens chromosome 5 clone CTC-436P1... 40 2.5
26gb|AC113036.8| Mus musculus chromosome 13, clone RP23-223B10, co... 40 2.5
27gb|AC150897.2| Mus musculus BAC clone RP23-289F7 from 7, complet... 40 2.5
28gb|AY487430.1| Uncultured organism clone 2A15 nitrilase (BD5338)... 40 2.5
29gb|AC068314.6| Homo sapiens chromosome 3 clone RP11-194D21 map 3... 40 2.5 
>gb|L36883.1|BLYBTH7T Hordeum vulgare thionin (BTH7) gene, complete cds
          Length = 2259

 Score =  218 bits (110), Expect = 5e-54
 Identities = 110/110 (100%)
 Strand = Plus / Minus

                                                                        
Query: 92   tggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatagaaatcatgccc 151
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2227 tggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatagaaatcatgccc 2168

                                                              
Query: 152  aagaaggcatgattaggcttcaacagactgaatgacttcaccatcattac 201
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2167 aagaaggcatgattaggcttcaacagactgaatgacttcaccatcattac 2118



 Score = 50.1 bits (25), Expect = 0.003
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 70   acagaaaatgacaaaacgaccttgg 94
            |||||||||||||||||||||||||
Sbjct: 2209 acagaaaatgacaaaacgaccttgg 2185



 Score = 42.1 bits (21), Expect = 0.64
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 56   acttcaccatcattacagaaa 76
            |||||||||||||||||||||
Sbjct: 2133 acttcaccatcattacagaaa 2113
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>gb|M19048.1|BLYTHNC Barley leaf specific thionin mRNA, complete cds, clone pKG1940
          Length = 663

 Score =  218 bits (110), Expect = 5e-54
 Identities = 110/110 (100%)
 Strand = Plus / Minus

                                                                       
Query: 92  tggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatagaaatcatgccc 151
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 tggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatagaaatcatgccc 470

                                                             
Query: 152 aagaaggcatgattaggcttcaacagactgaatgacttcaccatcattac 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 aagaaggcatgattaggcttcaacagactgaatgacttcaccatcattac 420



 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 39/39 (100%)
 Strand = Plus / Minus

                                                  
Query: 20  ctcttattggaacgagggaaaaaacagaaatacataact 58
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 597 ctcttattggaacgagggaaaaaacagaaatacataact 559



 Score = 50.1 bits (25), Expect = 0.003
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 70  acagaaaatgacaaaacgaccttgg 94
           |||||||||||||||||||||||||
Sbjct: 511 acagaaaatgacaaaacgaccttgg 487



 Score = 42.1 bits (21), Expect = 0.64
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 56  acttcaccatcattacagaaa 76
           |||||||||||||||||||||
Sbjct: 435 acttcaccatcattacagaaa 415
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>gb|M19047.1|BLYTHNB Barley leaf specific thionin mRNA, complete cds, clone pKG1348
          Length = 608

 Score =  218 bits (110), Expect = 5e-54
 Identities = 110/110 (100%)
 Strand = Plus / Minus

                                                                       
Query: 92  tggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatagaaatcatgccc 151
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 tggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatagaaatcatgccc 470

                                                             
Query: 152 aagaaggcatgattaggcttcaacagactgaatgacttcaccatcattac 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 aagaaggcatgattaggcttcaacagactgaatgacttcaccatcattac 420



 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 39/39 (100%)
 Strand = Plus / Minus

                                                  
Query: 20  ctcttattggaacgagggaaaaaacagaaatacataact 58
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 597 ctcttattggaacgagggaaaaaacagaaatacataact 559



 Score = 50.1 bits (25), Expect = 0.003
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 70  acagaaaatgacaaaacgaccttgg 94
           |||||||||||||||||||||||||
Sbjct: 511 acagaaaatgacaaaacgaccttgg 487



 Score = 42.1 bits (21), Expect = 0.64
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 56  acttcaccatcattacagaaa 76
           |||||||||||||||||||||
Sbjct: 435 acttcaccatcattacagaaa 415
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>gb|M19046.1|BLYTHNA Barley leaf specific thionin mRNA, complete cds, clone pKG2872
          Length = 540

 Score =  218 bits (110), Expect = 5e-54
 Identities = 110/110 (100%)
 Strand = Plus / Minus

                                                                       
Query: 92  tggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatagaaatcatgccc 151
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 tggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatagaaatcatgccc 470

                                                             
Query: 152 aagaaggcatgattaggcttcaacagactgaatgacttcaccatcattac 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 aagaaggcatgattaggcttcaacagactgaatgacttcaccatcattac 420



 Score = 50.1 bits (25), Expect = 0.003
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 70  acagaaaatgacaaaacgaccttgg 94
           |||||||||||||||||||||||||
Sbjct: 511 acagaaaatgacaaaacgaccttgg 487



 Score = 42.1 bits (21), Expect = 0.64
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 56  acttcaccatcattacagaaa 76
           |||||||||||||||||||||
Sbjct: 435 acttcaccatcattacagaaa 415
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>emb|X05590.1|HVTHIOR5 Barley mRNA for leaf-specific thionin (clone DD3)
          Length = 491

 Score =  210 bits (106), Expect = 1e-51
 Identities = 109/110 (99%)
 Strand = Plus / Minus

                                                                       
Query: 92  tggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatagaaatcatgccc 151
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 370 tggtatcaagattgttgaacagaaaatgaaaaaacgaccttggccatagaaatcatgccc 311

                                                             
Query: 152 aagaaggcatgattaggcttcaacagactgaatgacttcaccatcattac 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 aagaaggcatgattaggcttcaacagactgaatgacttcaccatcattac 261



 Score = 93.7 bits (47), Expect = 2e-16
 Identities = 57/59 (96%), Gaps = 1/59 (1%)
 Strand = Plus / Minus

                                                                      
Query: 1   aaatagatt-atcgtggcgactcttattggaacgagggaaaaaacagaaatacataact 58
           ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 aaatagattcatcgtggtgactcttattggaacgagggaaaaaacagaaatacataact 400



 Score = 42.1 bits (21), Expect = 0.64
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 70  acagaaaatgacaaaacgaccttgg 94
           ||||||||||| |||||||||||||
Sbjct: 352 acagaaaatgaaaaaacgaccttgg 328



 Score = 42.1 bits (21), Expect = 0.64
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 56  acttcaccatcattacagaaa 76
           |||||||||||||||||||||
Sbjct: 276 acttcaccatcattacagaaa 256
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>emb|X05589.1|HVTHIOR4 Barley mRNA for leaf-specific thionin (clone DG3)
          Length = 544

 Score =  210 bits (106), Expect = 1e-51
 Identities = 109/110 (99%)
 Strand = Plus / Minus

                                                                       
Query: 92  tggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatagaaatcatgccc 151
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatagaaatcatgccc 397

                                                             
Query: 152 aagaaggcatgattaggcttcaacagactgaatgacttcaccatcattac 201
           ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 396 aagaaggcatgattaggcttcaagagactgaatgacttcaccatcattac 347



 Score =  101 bits (51), Expect = 8e-19
 Identities = 58/59 (98%), Gaps = 1/59 (1%)
 Strand = Plus / Minus

                                                                      
Query: 1   aaatagatt-atcgtggcgactcttattggaacgagggaaaaaacagaaatacataact 58
           ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 aaatagattcatcgtggcgactcttattggaacgagggaaaaaacagaaatacataact 486



 Score = 50.1 bits (25), Expect = 0.003
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 70  acagaaaatgacaaaacgaccttgg 94
           |||||||||||||||||||||||||
Sbjct: 438 acagaaaatgacaaaacgaccttgg 414



 Score = 42.1 bits (21), Expect = 0.64
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 56  acttcaccatcattacagaaa 76
           |||||||||||||||||||||
Sbjct: 362 acttcaccatcattacagaaa 342
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>gb|L36882.1|BLYBTH6T Hordeum vulgare thionin (bth6) gene, complete cds
          Length = 2406

 Score =  163 bits (82), Expect = 3e-37
 Identities = 103/110 (93%)
 Strand = Plus / Minus

                                                                        
Query: 92   tggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatagaaatcatgccc 151
            ||||||||||||| || || | |||||||||| ||||||||||||||||||||||||| |
Sbjct: 2204 tggtatcaagattattcaagacaaaatgacaatacgaccttggccatagaaatcatgcac 2145

                                                              
Query: 152  aagaaggcatgattaggcttcaacagactgaatgacttcaccatcattac 201
            ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 2144 aagaaggcatgattaggcttcaacagactgaatgactgcaccatcattac 2095



 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 40/43 (93%), Gaps = 1/43 (2%)
 Strand = Plus / Minus

                                                       
Query: 1    aaatagatt-atcgtggcgactcttattggaacgagggaaaaa 42
            ||||||||| ||||||||||||||| ||||||| |||||||||
Sbjct: 2292 aaatagattcatcgtggcgactcttgttggaacaagggaaaaa 2250
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>emb|X05587.1|HVTHIOR2 Barley mRNA for leaf-specific thionin (clone DC4)
          Length = 658

 Score =  163 bits (82), Expect = 3e-37
 Identities = 103/110 (93%)
 Strand = Plus / Minus

                                                                       
Query: 92  tggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatagaaatcatgccc 151
           ||||||||||||| || || | |||||||||| ||||||||||||||||||||||||| |
Sbjct: 511 tggtatcaagattattcaagacaaaatgacaatacgaccttggccatagaaatcatgcac 452

                                                             
Query: 152 aagaaggcatgattaggcttcaacagactgaatgacttcaccatcattac 201
           ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 451 aagaaggcatgattaggcttcaacagactgaatgactgcaccatcattac 402



 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 52/57 (91%), Gaps = 2/57 (3%)
 Strand = Plus / Minus

                                                                    
Query: 1   aaatagatt-atcgtggcgactcttattggaacgagggaaaaaacagaaatacataa 56
           ||||||||| ||||||||||| ||||||||||| |||| |||||||||||| |||||
Sbjct: 599 aaatagattcatcgtggcgacccttattggaacaaggg-aaaaacagaaatgcataa 544
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>emb|X05576.1|HVTHIOR1 Barley mRNA for leaf-specific thionin (clone DB4)
          Length = 637

 Score =  155 bits (78), Expect = 6e-35
 Identities = 102/110 (92%)
 Strand = Plus / Minus

                                                                       
Query: 92  tggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatagaaatcatgccc 151
           ||||||||||||| || || | |||||||||| |||||| |||||||||||||||||| |
Sbjct: 504 tggtatcaagattattcaagacaaaatgacaatacgaccatggccatagaaatcatgcac 445

                                                             
Query: 152 aagaaggcatgattaggcttcaacagactgaatgacttcaccatcattac 201
           ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 444 aagaaggcatgattaggcttcaacagactgaatgactgcaccatcattac 395



 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 41/43 (95%), Gaps = 1/43 (2%)
 Strand = Plus / Minus

                                                      
Query: 1   aaatagatt-atcgtggcgactcttattggaacgagggaaaaa 42
           ||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 592 aaatagattcatcgtggcgactcttattggaacaagggaaaaa 550
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>emb|X05588.1|HVTHIOR3 Barley mRNA for leaf-specific thionin (clone DF2)
          Length = 453

 Score =  155 bits (78), Expect = 6e-35
 Identities = 102/110 (92%)
 Strand = Plus / Minus

                                                                       
Query: 92  tggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatagaaatcatgccc 151
           ||||||||||||| || || | |||||||||| ||||||||||||||||||||||||| |
Sbjct: 331 tggtatcaagattattcaagacaaaatgacaatacgaccttggccatagaaatcatgcac 272

                                                             
Query: 152 aagaaggcatgattaggcttcaacagactgaatgacttcaccatcattac 201
           ||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 271 aagaaggcatgattaggattcaacagactgaatgactgcaccatcattac 222



 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 52/57 (91%), Gaps = 2/57 (3%)
 Strand = Plus / Minus

                                                                    
Query: 1   aaatagatt-atcgtggcgactcttattggaacgagggaaaaaacagaaatacataa 56
           ||||||||| ||||||||||| ||||||||||| |||| |||||||||||| |||||
Sbjct: 419 aaatagattcatcgtggcgacccttattggaacaaggg-aaaaacagaaatgcataa 364
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>emb|AJ508712.1|HVU508712 Hordeum vulgare mRNA for putative thionin
          Length = 414

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                 
Query: 164 ttaggcttcaacagactgaatgacttcaccatcattac 201
           |||||||||||||||||||||||| |||||||||||||
Sbjct: 414 ttaggcttcaacagactgaatgacatcaccatcattac 377
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>dbj|AB072341.1| Avena sativa mRNA for thionin Asthi4, complete cds
          Length = 678

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                 
Query: 116 aatgacaaaacgaccttggccatagaaatcatgcccaagaaggcatgattaggc 169
           |||| |||||||||| ||||||||||||| | || | |||  ||||||||||||
Sbjct: 558 aatggcaaaacgaccatggccatagaaataaggcacgagagtgcatgattaggc 505
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>gb|AC149153.3| Xenopus tropicalis clone ISB-221D20, complete sequence
          Length = 58609

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 38   aaaaaacagaaatacataact 58
            |||||||||||||||||||||
Sbjct: 8230 aaaaaacagaaatacataact 8210
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>gb|AC004927.2| Homo sapiens PAC clone RP5-910I17 from 7, complete sequence
          Length = 80105

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 62    ccatcattacagaaaatgaca 82
             |||||||||||||||||||||
Sbjct: 54815 ccatcattacagaaaatgaca 54835
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>gb|AC147271.3| Pan troglodytes BAC clone RP43-121F15 from chromosome 7, complete
            sequence
          Length = 180569

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 62   ccatcattacagaaaatgaca 82
            |||||||||||||||||||||
Sbjct: 5632 ccatcattacagaaaatgaca 5612
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 98      caagattgttgaacagaaaat 118
               |||||||||||||||||||||
Sbjct: 6740764 caagattgttgaacagaaaat 6740784
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>dbj|AP005797.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:B1131G07
          Length = 133992

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 98    caagattgttgaacagaaaat 118
             |||||||||||||||||||||
Sbjct: 61817 caagattgttgaacagaaaat 61837
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>dbj|AB072342.1| Avena sativa mRNA for thionin Asthi5, complete cds
          Length = 641

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                        
Query: 127 gaccttggccatagaaatcatgcccaagaaggcatgattaggctt 171
           ||||| ||||| ||||||||||| |||||  ||||||||| ||||
Sbjct: 496 gacctcggccaaagaaatcatgcacaagagtgcatgattaagctt 452
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>gb|AC115728.11| Mus musculus chromosome 5, clone RP23-31J24, complete sequence
          Length = 211351

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 64     atcattacagaaaatgacaa 83
              ||||||||||||||||||||
Sbjct: 160801 atcattacagaaaatgacaa 160820
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>emb|AL646095.27| Mouse DNA sequence from clone RP23-17P18 on chromosome 11 Contains the
             3' end of the Asb3 gene for ankyrin repeat and SOCS
             box-containing protein 3 and two zinc finger protein
             pseudogenes, complete sequence
          Length = 173655

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 66    cattacagaaaatgacaaaa 85
             ||||||||||||||||||||
Sbjct: 18597 cattacagaaaatgacaaaa 18616
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>gb|AC026188.6| Homo sapiens chromosome 3 clone RP11-319I18 map 3p, complete sequence
          Length = 177721

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 99     aagattgttgaacagaaaat 118
              ||||||||||||||||||||
Sbjct: 113658 aagattgttgaacagaaaat 113677
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>gb|AC154857.2| Mus musculus BAC clone RP23-16K21 from chromosome 13, complete sequence
          Length = 214859

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 64    atcattacagaaaatgacaa 83
             ||||||||||||||||||||
Sbjct: 35358 atcattacagaaaatgacaa 35339
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>gb|AY128102.1| Lycopersicon esculentum isolate vis1-lta small heat shock protein
            (vis1) gene, complete cds
          Length = 2257

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 19   actcttattggaacgagggaaaaa 42
            |||||||||||||||| |||||||
Sbjct: 1736 actcttattggaacgaaggaaaaa 1713
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>gb|AY128101.1| Lycopersicon esculentum isolate vis1-hta small heat shock protein
            (vis1) gene, complete cds
          Length = 2224

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 19   actcttattggaacgagggaaaaa 42
            |||||||||||||||| |||||||
Sbjct: 1703 actcttattggaacgaaggaaaaa 1680
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>gb|AC008498.3|AC008498 Homo sapiens chromosome 5 clone CTC-436P18, complete sequence
          Length = 217898

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 38     aaaaaacagaaatacataac 57
              ||||||||||||||||||||
Sbjct: 161134 aaaaaacagaaatacataac 161153
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>gb|AC113036.8| Mus musculus chromosome 13, clone RP23-223B10, complete sequence
          Length = 190133

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 64     atcattacagaaaatgacaa 83
              ||||||||||||||||||||
Sbjct: 168976 atcattacagaaaatgacaa 168957
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>gb|AC150897.2| Mus musculus BAC clone RP23-289F7 from 7, complete sequence
          Length = 227073

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 38     aaaaaacagaaatacataac 57
              ||||||||||||||||||||
Sbjct: 101064 aaaaaacagaaatacataac 101083
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>gb|AY487430.1| Uncultured organism clone 2A15 nitrilase (BD5338) gene, complete
           cds
          Length = 1047

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 129 ccttggccatagaaatcatgccca 152
           |||||||||| |||||||||||||
Sbjct: 862 ccttggccattgaaatcatgccca 839
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>gb|AC068314.6| Homo sapiens chromosome 3 clone RP11-194D21 map 3p, complete sequence
          Length = 179814

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 99   aagattgttgaacagaaaat 118
            ||||||||||||||||||||
Sbjct: 3697 aagattgttgaacagaaaat 3716


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,390,140
Number of Sequences: 3902068
Number of extensions: 2390140
Number of successful extensions: 181673
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 181537
Number of HSP's gapped (non-prelim): 134
length of query: 201
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 179
effective length of database: 17,147,199,772
effective search space: 3069348759188
effective search space used: 3069348759188
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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