>YQ52_SCHPO (O74419) Hypothetical protein C162.02c in chromosome III|
          Length = 981

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 12/28 (42%), Positives = 21/28 (75%)
 Frame = -1

Query: 203 REMEYLIRIHLLLVCSSLEKNDEHARER 120
           R +EYL+++++ +VC   E +DE A+ER
Sbjct: 659 RFLEYLVKLNISVVCLVRESSDEAAKER 686

>PHND_ECOLI (P16682) Phosphonates-binding periplasmic protein precursor|
          Length = 338

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 21/62 (33%), Positives = 29/62 (46%)
 Frame = -2

Query: 265 DSSSENVSDLLPFCKDLQFATGKWNT*FGFIYCWYVPPWKKMTSMPGNGLLMSIVISSSD 86
           DS   N++DLL   KDL F  G  N+  GF+             +PG  +     IS+SD
Sbjct: 128 DSPINNLNDLLAKRKDLTFGNGDPNSTSGFL-------------VPGYYVFAKNNISASD 174

Query: 85  FR 80
           F+
Sbjct: 175 FK 176

>NUDEL_DROME (P98159) Serine protease nudel precursor (EC 3.4.21.-)|
          Length = 2616

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 169 NK*IRIKYSISLLQIADPCRMEANLKH 249
           NK  R++  +  L + DP RMEAN++H
Sbjct: 123 NKKHRMRRDLHGLDLLDPVRMEANMQH 149

>UBR1_SCHPO (O60152) Ubiquitin-protein ligase E3 component N-recognin-1 (EC|
           6.-.-.-) (N-end-recognizing protein)
          Length = 1958

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 131 HARHFFPGRNIPTINESESSIPFPCCKLQILAEWKQI 241
           H+RH++P  ++P +    S + F    L  L  WK +
Sbjct: 419 HSRHWYPSNSLPDVLSYASRVRFDYFFLYDLKLWKSL 455


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,275,435
Number of Sequences: 219361
Number of extensions: 945799
Number of successful extensions: 1891
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1891
length of database: 80,573,946
effective HSP length: 98
effective length of database: 59,076,568
effective search space used: 1417837632
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)