ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags28a01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC099042.9| Oryza sativa chromosome 10 BAC OSJNBa0041L14 geno... 44 0.31
2dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.31
3dbj|AK068249.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.31
4emb|BX001047.7| Zebrafish DNA sequence from clone CH211-288D18 i... 44 0.31
5gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 44 0.31
6ref|NM_106254.2| Arabidopsis thaliana RNA binding / pseudouridin... 42 1.2
7ref|NM_202422.1| Arabidopsis thaliana RNA binding / pseudouridin... 42 1.2
8gb|AC109329.8| Homo sapiens chromosome 8, clone CTD-3107M8, comp... 42 1.2
9gb|AC090820.6| Homo sapiens chromosome 8, clone CTD-2345M20, com... 42 1.2
10emb|BX816325.1|CNS0ACDU Arabidopsis thaliana Full-length cDNA Co... 42 1.2
11gb|AC091788.6| Homo sapiens BAC clone RP11-400A23 from 2, comple... 42 1.2
12gb|AC007396.6|AC007396 Genomic sequence for Arabidopsis thaliana... 42 1.2
13emb|BX005484.7| Zebrafish DNA sequence from clone DKEY-25G12, co... 42 1.2
14dbj|AK117781.1| Arabidopsis thaliana At1g76050 mRNA for putative... 42 1.2
15gb|AC168274.5| Mus musculus BAC RP23-229B1 (Roswell Park Cancer... 40 4.9
16ref|NM_195383.1| Oryza sativa (japonica cultivar-group) hypothet... 40 4.9
17gb|AC169505.1| Mus musculus BAC clone RP24-257J8 from chromosome... 40 4.9
18gb|AC005372.1| Homo sapiens chromosome 5, P1 clone 1195e2 (LBNL ... 40 4.9
19emb|CR759765.6| Zebrafish DNA sequence from clone DKEY-1F12 in l... 40 4.9
20gb|AC073418.6| Homo sapiens BAC clone RP11-334C6 from 7, complet... 40 4.9
21emb|CR786580.6| Human DNA sequence from clone RP11-764K9 on chro... 40 4.9
22emb|BX119919.5| Human DNA sequence from clone RP11-987D21 on chr... 40 4.9
23emb|AL591385.7| Human DNA sequence from clone RP11-391M20 on chr... 40 4.9
24emb|AL353763.14| Human DNA sequence from clone RP11-87H9 on chro... 40 4.9
25emb|AL831791.5| Zebrafish DNA sequence from clone DKEY-76P14 in ... 40 4.9
26emb|AL445925.19| Human DNA sequence from clone RP11-403A15 on ch... 40 4.9
27gb|AE014179.1| Mus musculus piebald deletion region section 7 of... 40 4.9
28gb|AC116618.4| Homo sapiens BAC clone RP11-98L17 from 4, complet... 40 4.9
29dbj|AK137078.1| Mus musculus 12 days embryo embryonic body betwe... 40 4.9
30gb|AC093749.3| Homo sapiens BAC clone RP11-30B7 from 4, complete... 40 4.9
31gb|AC182464.2| Pan troglodytes BAC clone CH251-539C18 from chrom... 40 4.9
32gb|AC010301.7| Homo sapiens chromosome 5 clone CTB-2L9, complete... 40 4.9
33emb|CR387925.5| Human DNA sequence from clone RP11-58A12 on chro... 40 4.9
34gb|AF039717.2| Caenorhabditis elegans cosmid R13H8, complete seq... 40 4.9
35gb|AC013492.5|AC013492 Homo sapiens chromosome , clone RP11-32K4... 40 4.9
36gb|AC079176.15| Homo sapiens X BAC RP11-325D5 (Roswell Park Canc... 40 4.9
37dbj|AB011485.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 4.9
38emb|AL592183.10| Human DNA sequence from clone RP11-297D8 on chr... 40 4.9
39gb|AC154532.3| Mus musculus BAC clone RP23-469G7 from 14, comple... 40 4.9
40gb|AC121135.9| Mus musculus chromosome 18, clone RP23-328A22, co... 40 4.9
41gb|AC113936.16| Mus musculus chromosome 10, clone RP23-9F21, com... 40 4.9
42gb|AC173289.2| Medicago truncatula chromosome 2 BAC clone mth2-3... 40 4.9
43gb|AC135119.4| Mus musculus BAC clone RP24-535H19 from 14, compl... 40 4.9 
>gb|AC099042.9| Oryza sativa chromosome 10 BAC OSJNBa0041L14 genomic sequence, complete
             sequence
          Length = 158742

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                  
Query: 296   gtttattcttctgcttcaactagccttccacgtacccatctcatcttanactt 348
             |||||||||||  |||||||||| |  ||||||||||| ||||| ||| ||||
Sbjct: 75076 gtttattcttccacttcaactagtcgcccacgtacccacctcattttagactt 75128
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                    
Query: 296     gtttattcttctgcttcaactagccttccacgtacccatctcatcttanactt 348
               |||||||||||  |||||||||| |  ||||||||||| ||||| ||| ||||
Sbjct: 6527104 gtttattcttccacttcaactagtcgcccacgtacccacctcattttagactt 6527052
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>dbj|AK068249.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013146P20, full
            insert sequence
          Length = 2388

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                 
Query: 296  gtttattcttctgcttcaactagccttccacgtacccatctcatcttanactt 348
            |||||||||||  |||||||||| |  ||||||||||| ||||| ||| ||||
Sbjct: 1857 gtttattcttccacttcaactagtcgcccacgtacccacctcattttagactt 1805
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>emb|BX001047.7| Zebrafish DNA sequence from clone CH211-288D18 in linkage group 7,
             complete sequence
          Length = 87084

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 175   tgaatccgaatcaagtattcca 196
             ||||||||||||||||||||||
Sbjct: 63976 tgaatccgaatcaagtattcca 63955
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                    
Query: 296     gtttattcttctgcttcaactagccttccacgtacccatctcatcttanactt 348
               |||||||||||  |||||||||| |  ||||||||||| ||||| ||| ||||
Sbjct: 6529490 gtttattcttccacttcaactagtcgcccacgtacccacctcattttagactt 6529438
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>ref|NM_106254.2| Arabidopsis thaliana RNA binding / pseudouridine synthase/
           pseudouridylate synthase AT1G76050 transcript variant
           AT1G76050.1 mRNA, complete cds
          Length = 2223

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 243 gaaacattttcagatgatgaa 263
           |||||||||||||||||||||
Sbjct: 616 gaaacattttcagatgatgaa 636
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>ref|NM_202422.1| Arabidopsis thaliana RNA binding / pseudouridine synthase/
           pseudouridylate synthase AT1G76050 transcript variant
           AT1G76050.2 mRNA, complete cds
          Length = 2239

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 243 gaaacattttcagatgatgaa 263
           |||||||||||||||||||||
Sbjct: 651 gaaacattttcagatgatgaa 671
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>gb|AC109329.8| Homo sapiens chromosome 8, clone CTD-3107M8, complete sequence
          Length = 215644

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 232  gaagcaaatctgaaacattttcaga 256
            |||||||||||| ||||||||||||
Sbjct: 4070 gaagcaaatctggaacattttcaga 4046
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>gb|AC090820.6| Homo sapiens chromosome 8, clone CTD-2345M20, complete sequence
          Length = 138021

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 232   gaagcaaatctgaaacattttcaga 256
             |||||||||||| ||||||||||||
Sbjct: 50604 gaagcaaatctggaacattttcaga 50580
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>emb|BX816325.1|CNS0ACDU Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH41ZA09 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1616

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 243 gaaacattttcagatgatgaa 263
           |||||||||||||||||||||
Sbjct: 650 gaaacattttcagatgatgaa 670
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>gb|AC091788.6| Homo sapiens BAC clone RP11-400A23 from 2, complete sequence
          Length = 92932

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 275   tttgactgcttagacctcctagttt 299
             |||||||||||||| ||||||||||
Sbjct: 29442 tttgactgcttagatctcctagttt 29466
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>gb|AC007396.6|AC007396 Genomic sequence for Arabidopsis thaliana BAC T4O12 from chromosome I,
             complete sequence
          Length = 95870

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 243   gaaacattttcagatgatgaa 263
             |||||||||||||||||||||
Sbjct: 90589 gaaacattttcagatgatgaa 90609
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>emb|BX005484.7| Zebrafish DNA sequence from clone DKEY-25G12, complete sequence
          Length = 212049

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 27    tttaccatgatttatagttaatttt 51
             |||| ||||||||||||||||||||
Sbjct: 81916 tttatcatgatttatagttaatttt 81892
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>dbj|AK117781.1| Arabidopsis thaliana At1g76050 mRNA for putative RNA
           pseudouridylate synthase, complete cds, clone:
           RAFL17-47-D22
          Length = 1546

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 243 gaaacattttcagatgatgaa 263
           |||||||||||||||||||||
Sbjct: 608 gaaacattttcagatgatgaa 628
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>gb|AC168274.5| Mus musculus  BAC RP23-229B1 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 177020

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 4     acacattacataaatacatt 23
             ||||||||||||||||||||
Sbjct: 32443 acacattacataaatacatt 32424
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>ref|NM_195383.1| Oryza sativa (japonica cultivar-group) hypothetical protein
            (OSJNBa0041L14.16), mRNA
          Length = 1656

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 43/51 (84%)
 Strand = Plus / Minus

                                                               
Query: 298  ttattcttctgcttcaactagccttccacgtacccatctcatcttanactt 348
            |||||||||  |||||||||| |  ||||||||||| ||||| ||| ||||
Sbjct: 1656 ttattcttccacttcaactagtcgcccacgtacccacctcattttagactt 1606
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>gb|AC169505.1| Mus musculus BAC clone RP24-257J8 from chromosome 16, complete sequence
          Length = 138498

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 240    tctgaaacattttcagatga 259
              ||||||||||||||||||||
Sbjct: 132960 tctgaaacattttcagatga 132941
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>gb|AC005372.1| Homo sapiens chromosome 5, P1 clone 1195e2 (LBNL H73), complete
             sequence
          Length = 44957

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 4     acacattacataaatacatt 23
             ||||||||||||||||||||
Sbjct: 25180 acacattacataaatacatt 25161
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>emb|CR759765.6| Zebrafish DNA sequence from clone DKEY-1F12 in linkage group 17, complete
              sequence
          Length = 224482

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 177    aatccgaatcaagtattcca 196
              ||||||||||||||||||||
Sbjct: 100273 aatccgaatcaagtattcca 100292
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>gb|AC073418.6| Homo sapiens BAC clone RP11-334C6 from 7, complete sequence
          Length = 83743

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 3     gacacattacataaatacattgtc 26
             |||||||||||||||| |||||||
Sbjct: 23075 gacacattacataaatccattgtc 23098
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>emb|CR786580.6| Human DNA sequence from clone RP11-764K9 on chromosome 9 Contains two
             novel pseudogenes, a novel gene, a pseudogene similar to
             part of double homeobox, 4 (DUX4), a FSHD region gene 1
             (FRG1) pseudogene and four CpG islands, complete sequence
          Length = 191980

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 40    atagttaattttctcctaaa 59
             ||||||||||||||||||||
Sbjct: 37274 atagttaattttctcctaaa 37255
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>emb|BX119919.5| Human DNA sequence from clone RP11-987D21 on chromosome X, complete
            sequence
          Length = 55442

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 237  aaatctgaaacattttcaga 256
            ||||||||||||||||||||
Sbjct: 1956 aaatctgaaacattttcaga 1937
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>emb|AL591385.7| Human DNA sequence from clone RP11-391M20 on chromosome 9 Contains a
             novel gene similar to phosphoglucomutase 5 (PGM5), a
             pseudogene similar to part of FSHD region gene 1 (FRG1)
             and two CpG island, complete sequence
          Length = 174765

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 40    atagttaattttctcctaaa 59
             ||||||||||||||||||||
Sbjct: 40871 atagttaattttctcctaaa 40852
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>emb|AL353763.14| Human DNA sequence from clone RP11-87H9 on chromosome 9 Contains a
              pseudogene similar to part of FSHD region gene 1 (FRG1), a
              pseudogene similar to part of phosphoglucomutase 5 (PGM5)
              and a CpG island, complete sequence
          Length = 157266

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 40     atagttaattttctcctaaa 59
              ||||||||||||||||||||
Sbjct: 102143 atagttaattttctcctaaa 102162
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>emb|AL831791.5| Zebrafish DNA sequence from clone DKEY-76P14 in linkage group 11
             Contains a novel gene similar to human and rodent RRAD
             (Ras-related protein associated with diabetes), a novel
             gene, a novel gene similar to mouse PNP (purine-nucleoside
             phosphorylase), a novel gene similar to human and rodent
             SOX11 (SRY (sex determining region Y)-box 11) and a CpG
             island, complete sequence
          Length = 204498

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 177   aatccgaatcaagtattccatttc 200
             |||| |||||||||||||||||||
Sbjct: 18413 aatcagaatcaagtattccatttc 18390
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>emb|AL445925.19| Human DNA sequence from clone RP11-403A15 on chromosome 9 Contains a
             pseudogene similar to part of FSHD region gene 1 (FSG1)
             (FRG1), a pseudogene similar to part of phosphoglucomutase
             5 (PGRM) (PGM5) and four CpG islands, complete sequence
          Length = 196461

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 40    atagttaattttctcctaaa 59
             ||||||||||||||||||||
Sbjct: 42983 atagttaattttctcctaaa 42964
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>gb|AE014179.1| Mus musculus piebald deletion region section 7 of 11 of the complete
              sequence
          Length = 400029

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 33     atgatttatagttaattttctcct 56
              |||||||||| |||||||||||||
Sbjct: 167750 atgatttataattaattttctcct 167773
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>gb|AC116618.4| Homo sapiens BAC clone RP11-98L17 from 4, complete sequence
          Length = 153040

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 40    atagttaattttctcctaaa 59
             ||||||||||||||||||||
Sbjct: 91436 atagttaattttctcctaaa 91417
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>dbj|AK137078.1| Mus musculus 12 days embryo embryonic body between diaphragm region
            and neck cDNA, RIKEN full-length enriched library,
            clone:9430063I17 product:hypothetical protein, full
            insert sequence
          Length = 4734

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 22   ttgtctttaccatgatttat 41
            ||||||||||||||||||||
Sbjct: 4629 ttgtctttaccatgatttat 4648
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>gb|AC093749.3| Homo sapiens BAC clone RP11-30B7 from 4, complete sequence
          Length = 163102

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 40   atagttaattttctcctaaa 59
            ||||||||||||||||||||
Sbjct: 9061 atagttaattttctcctaaa 9080
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>gb|AC182464.2| Pan troglodytes BAC clone CH251-539C18 from chromosome 20, complete
             sequence
          Length = 162793

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 40    atagttaattttctcctaaa 59
             ||||||||||||||||||||
Sbjct: 15961 atagttaattttctcctaaa 15980
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>gb|AC010301.7| Homo sapiens chromosome 5 clone CTB-2L9, complete sequence
          Length = 155067

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 4      acacattacataaatacatt 23
              ||||||||||||||||||||
Sbjct: 111586 acacattacataaatacatt 111567
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>emb|CR387925.5| Human DNA sequence from clone RP11-58A12 on chromosome 9, complete
             sequence
          Length = 172519

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 40    atagttaattttctcctaaa 59
             ||||||||||||||||||||
Sbjct: 13755 atagttaattttctcctaaa 13736
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>gb|AF039717.2| Caenorhabditis elegans cosmid R13H8, complete sequence
          Length = 19120

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 236  caaatctgaaacattttcag 255
            ||||||||||||||||||||
Sbjct: 2275 caaatctgaaacattttcag 2256
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>gb|AC013492.5|AC013492 Homo sapiens chromosome , clone RP11-32K4, complete sequence
          Length = 167174

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 20     cattgtctttaccatgattt 39
              ||||||||||||||||||||
Sbjct: 146503 cattgtctttaccatgattt 146484
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>gb|AC079176.15| Homo sapiens X BAC RP11-325D5 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 186278

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 237    aaatctgaaacattttcaga 256
              ||||||||||||||||||||
Sbjct: 182651 aaatctgaaacattttcaga 182632
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>dbj|AB011485.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MXH1
          Length = 87210

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 36    atttatagttaattttctcctaaa 59
             |||||| |||||||||||||||||
Sbjct: 71358 atttatcgttaattttctcctaaa 71335
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>emb|AL592183.10| Human DNA sequence from clone RP11-297D8 on chromosome 22, complete
              sequence
          Length = 179198

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 40     atagttaattttctcctaaa 59
              ||||||||||||||||||||
Sbjct: 125158 atagttaattttctcctaaa 125177
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>gb|AC154532.3| Mus musculus BAC clone RP23-469G7 from 14, complete sequence
          Length = 193236

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 22     ttgtctttaccatgatttat 41
              ||||||||||||||||||||
Sbjct: 124267 ttgtctttaccatgatttat 124248
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>gb|AC121135.9| Mus musculus chromosome 18, clone RP23-328A22, complete sequence
          Length = 189515

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 149    ccagggaggaacataccaac 168
              ||||||||||||||||||||
Sbjct: 121867 ccagggaggaacataccaac 121848
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>gb|AC113936.16| Mus musculus chromosome 10, clone RP23-9F21, complete sequence
          Length = 205086

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 4     acacattacataaatacatt 23
             ||||||||||||||||||||
Sbjct: 48718 acacattacataaatacatt 48737
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>gb|AC173289.2| Medicago truncatula chromosome 2 BAC clone mth2-33e9, complete sequence
          Length = 127190

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 243   gaaacattttcagatgatga 262
             ||||||||||||||||||||
Sbjct: 54557 gaaacattttcagatgatga 54576
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>gb|AC135119.4| Mus musculus BAC clone RP24-535H19 from 14, complete sequence
          Length = 179520

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 33    atgatttatagttaattttctcct 56
             |||||||||| |||||||||||||
Sbjct: 62693 atgatttataattaattttctcct 62716


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,641,780
Number of Sequences: 3902068
Number of extensions: 3641780
Number of successful extensions: 78366
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78261
Number of HSP's gapped (non-prelim): 105
length of query: 368
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 346
effective length of database: 17,147,199,772
effective search space: 5932931121112
effective search space used: 5932931121112
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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