>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  125 bits (63), Expect = 2e-25
 Identities = 159/190 (83%), Gaps = 6/190 (3%)
 Strand = Plus / Minus

                                                                            
Query: 435      aagcaatgcttgtcgtcgaagccttcctcagtgagcaggcctgtgacgagtttctttatc 494
                |||||||||||||| || ||||||||||  ||||||| ||||||||| |||||||||| |
Sbjct: 23462935 aagcaatgcttgtcatcaaagccttcctgggtgagcaagcctgtgacaagtttctttagc 23462876

                                                                            
Query: 495      ctgtccgcgccaggccccggacggagatcttgtacacgctcgacactgaagtgtttccct 554
                ||||| || |||||||| || |||||||||||||||||||| ||| ||||   |   |||
Sbjct: 23462875 ctgtctgcaccaggccctgggcggagatcttgtacacgctcaacagtgaacgat---cct 23462819

                                                                            
Query: 555      ttcactgtt---gtgttcaacagatccaaccatncaccgggcacgaagccatcgggttga 611
                |||||||||   |||||||||||||||| |||  |||| | |||||| || || ||||| 
Sbjct: 23462818 ttcactgttgtcgtgttcaacagatccatccacccacctgccacgaacccgtcaggttgg 23462759

                          
Query: 612      cggcccaata 621
                ||||||||||
Sbjct: 23462758 cggcccaata 23462749



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 62/68 (91%)
 Strand = Plus / Minus

                                                                            
Query: 173      gggctgatataatcttctaacataacctaatgtgctattagtggtgtataatctctgcct 232
                |||||||||||||| ||||||||||||||||| |||||||||| ||||||||||| |  |
Sbjct: 23463194 gggctgatataatcctctaacataacctaatgagctattagtgctgtataatctccgtgt 23463135

                        
Query: 233      gctacggc 240
                ||||||||
Sbjct: 23463134 gctacggc 23463127



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 45/50 (90%), Gaps = 1/50 (2%)
 Strand = Plus / Minus

                                                                  
Query: 22       cagtttgcccggaggaatccacaattaatacaacgaaatctcatgcgctg 71
                |||||||||| || ||||||| | ||||||||||||||||||| ||||||
Sbjct: 23463351 cagtttgcccagaagaatcca-agttaatacaacgaaatctcaagcgctg 23463303

>dbj|AP003615.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0486H12
          Length = 179085

 Score =  125 bits (63), Expect = 2e-25
 Identities = 159/190 (83%), Gaps = 6/190 (3%)
 Strand = Plus / Minus

                                                                          
Query: 435    aagcaatgcttgtcgtcgaagccttcctcagtgagcaggcctgtgacgagtttctttatc 494
              |||||||||||||| || ||||||||||  ||||||| ||||||||| |||||||||| |
Sbjct: 122490 aagcaatgcttgtcatcaaagccttcctgggtgagcaagcctgtgacaagtttctttagc 122431

                                                                          
Query: 495    ctgtccgcgccaggccccggacggagatcttgtacacgctcgacactgaagtgtttccct 554
              ||||| || |||||||| || |||||||||||||||||||| ||| ||||   |   |||
Sbjct: 122430 ctgtctgcaccaggccctgggcggagatcttgtacacgctcaacagtgaacgat---cct 122374

                                                                          
Query: 555    ttcactgtt---gtgttcaacagatccaaccatncaccgggcacgaagccatcgggttga 611
              |||||||||   |||||||||||||||| |||  |||| | |||||| || || ||||| 
Sbjct: 122373 ttcactgttgtcgtgttcaacagatccatccacccacctgccacgaacccgtcaggttgg 122314

                        
Query: 612    cggcccaata 621
              ||||||||||
Sbjct: 122313 cggcccaata 122304



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 62/68 (91%)
 Strand = Plus / Minus

                                                                          
Query: 173    gggctgatataatcttctaacataacctaatgtgctattagtggtgtataatctctgcct 232
              |||||||||||||| ||||||||||||||||| |||||||||| ||||||||||| |  |
Sbjct: 122749 gggctgatataatcctctaacataacctaatgagctattagtgctgtataatctccgtgt 122690

                      
Query: 233    gctacggc 240
              ||||||||
Sbjct: 122689 gctacggc 122682



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 45/50 (90%), Gaps = 1/50 (2%)
 Strand = Plus / Minus

                                                                
Query: 22     cagtttgcccggaggaatccacaattaatacaacgaaatctcatgcgctg 71
              |||||||||| || ||||||| | ||||||||||||||||||| ||||||
Sbjct: 122906 cagtttgcccagaagaatcca-agttaatacaacgaaatctcaagcgctg 122858

>dbj|AK070134.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023043B05, full
           insert sequence
          Length = 1087

 Score =  125 bits (63), Expect = 2e-25
 Identities = 159/190 (83%), Gaps = 6/190 (3%)
 Strand = Plus / Minus

                                                                       
Query: 435 aagcaatgcttgtcgtcgaagccttcctcagtgagcaggcctgtgacgagtttctttatc 494
           |||||||||||||| || ||||||||||  ||||||| ||||||||| |||||||||| |
Sbjct: 634 aagcaatgcttgtcatcaaagccttcctgggtgagcaagcctgtgacaagtttctttagc 575

                                                                       
Query: 495 ctgtccgcgccaggccccggacggagatcttgtacacgctcgacactgaagtgtttccct 554
           ||||| || |||||||| || |||||||||||||||||||| ||| ||||   |   |||
Sbjct: 574 ctgtctgcaccaggccctgggcggagatcttgtacacgctcaacagtgaacgat---cct 518

                                                                       
Query: 555 ttcactgtt---gtgttcaacagatccaaccatncaccgggcacgaagccatcgggttga 611
           |||||||||   |||||||||||||||| |||  |||| | |||||| || || ||||| 
Sbjct: 517 ttcactgttgtcgtgttcaacagatccatccacccacctgccacgaacccgtcaggttgg 458

                     
Query: 612 cggcccaata 621
           ||||||||||
Sbjct: 457 cggcccaata 448



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 62/68 (91%)
 Strand = Plus / Minus

                                                                       
Query: 173 gggctgatataatcttctaacataacctaatgtgctattagtggtgtataatctctgcct 232
           |||||||||||||| ||||||||||||||||| |||||||||| ||||||||||| |  |
Sbjct: 893 gggctgatataatcctctaacataacctaatgagctattagtgctgtataatctccgtgt 834

                   
Query: 233 gctacggc 240
           ||||||||
Sbjct: 833 gctacggc 826



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 45/50 (90%), Gaps = 1/50 (2%)
 Strand = Plus / Minus

                                                              
Query: 22   cagtttgcccggaggaatccacaattaatacaacgaaatctcatgcgctg 71
            |||||||||| || ||||||| | ||||||||||||||||||| ||||||
Sbjct: 1050 cagtttgcccagaagaatcca-agttaatacaacgaaatctcaagcgctg 1002

>gb|AY107775.1| Zea mays PCO126512 mRNA sequence
          Length = 1352

 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 111/134 (82%)
 Strand = Plus / Minus

                                                                       
Query: 437 gcaatgcttgtcgtcgaagccttcctcagtgagcaggcctgtgacgagtttctttatcct 496
           |||||||||||| || || ||||| |  |||||||  |||||||||||||||||||  ||
Sbjct: 849 gcaatgcttgtcatcaaaaccttcttgggtgagcaatcctgtgacgagtttctttaatct 790

                                                                       
Query: 497 gtccgcgccaggccccggacggagatcttgtacacgctcgacactgaagtgtttcccttt 556
           |||| | ||||| || || ||||||||||| || ||||| ||  ||||| ||||||||||
Sbjct: 789 gtccacaccaggacctgggcggagatcttgcacgcgctcaaccgtgaagggtttcccttt 730

                         
Query: 557 cactgttgtgttca 570
           | | ||||||||||
Sbjct: 729 ctcagttgtgttca 716



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 32/32 (100%)
 Strand = Plus / Minus

                                            
Query: 248  gtggtctcctgctgtacggtaactcaactcaa 279
            ||||||||||||||||||||||||||||||||
Sbjct: 1046 gtggtctcctgctgtacggtaactcaactcaa 1015

>gb|CP000081.1| Leishmania major chromosome 35, complete sequence
          Length = 2090491

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 233     gctacggcggccgtggtggtc 253
               |||||||||||||||||||||
Sbjct: 1272911 gctacggcggccgtggtggtc 1272891

>ref|XM_838322.1| Leishmania major strain Friedlin ATP-dependent RNA helicase
           (LMJ_1239) partial mRNA
          Length = 2772

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 233 gctacggcggccgtggtggtc 253
           |||||||||||||||||||||
Sbjct: 791 gctacggcggccgtggtggtc 811

>gb|AC132619.3| Mus musculus BAC clone RP23-195N4 from chromosome 7, complete sequence
          Length = 193890

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 458   ttcctcagtgagcaggcctgt 478
             |||||||||||||||||||||
Sbjct: 96153 ttcctcagtgagcaggcctgt 96133

>emb|AL355501.26| Human DNA sequence from clone RP11-360P7 on chromosome 10 Contains the
             5' end of the gene for a novel protein (FLJ32798), a zinc
             finger protein pseudogene and a CpG island, complete
             sequence
          Length = 179380

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 537   acactgaagtgtttccctttc 557
             |||||||||||||||||||||
Sbjct: 71300 acactgaagtgtttccctttc 71320

>emb|AL157369.7| Human DNA sequence from clone RP11-528D24 on chromosome 13 Contains the
             SUCLA2 gene for succinate-CoA ligase, ADP-forming, beta
             subunit (A-BETA), a novel gene and a CpG island, complete
             sequence
          Length = 83827

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 417   gaatcattaagtttttataag 437
             |||||||||||||||||||||
Sbjct: 63352 gaatcattaagtttttataag 63372

>emb|AL121933.15|HSA549D23 Human DNA sequence from clone RP11-549D23 on chromosome 6, complete
              sequence
          Length = 185467

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 424    taagtttttataagcaatgct 444
              |||||||||||||||||||||
Sbjct: 146878 taagtttttataagcaatgct 146858

>gb|AC104012.11| Homo sapiens chromosome 8, clone RP11-281N10, complete sequence
          Length = 170668

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 550    tccctttcactgttgtgttca 570
              |||||||||||||||||||||
Sbjct: 117488 tccctttcactgttgtgttca 117468

>gb|AC022867.10| Homo sapiens chromosome 8, clone RP11-367C12, complete sequence
          Length = 196931

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 550  tccctttcactgttgtgttca 570
            |||||||||||||||||||||
Sbjct: 2463 tccctttcactgttgtgttca 2443

>gb|AY242353.1| Mus musculus teashirt 1 (Tsh1) mRNA, complete cds
          Length = 3046

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 544  agtgtttccctttcactgtt 563
            ||||||||||||||||||||
Sbjct: 2971 agtgtttccctttcactgtt 2952

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 155      atattattaataatggttgg 174
                ||||||||||||||||||||
Sbjct: 29578236 atattattaataatggttgg 29578255

>ref|XM_662939.1| Cryptosporidium hominis TU502 hypothetical protein (Chro.70434)
           partial mRNA
          Length = 1374

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 390 agattttgaccaaagtaacc 409
           ||||||||||||||||||||
Sbjct: 28  agattttgaccaaagtaacc 9

>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005
          Length = 4429080

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 155     atattattaataatggttgg 174
               ||||||||||||||||||||
Sbjct: 1894852 atattattaataatggttgg 1894833

>gb|AC107623.2| Homo sapiens chromosome 3 clone RP11-648C16, complete sequence
          Length = 176901

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 285   ttgtctataaggaacacctg 304
             ||||||||||||||||||||
Sbjct: 85887 ttgtctataaggaacacctg 85868

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 155      atattattaataatggttgg 174
                ||||||||||||||||||||
Sbjct: 29669658 atattattaataatggttgg 29669677

>gb|AC120983.6| Oryza sativa chromosome 3 BAC OSJNBb0011H13 genomic sequence, complete
              sequence
          Length = 132782

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 155    atattattaataatggttgg 174
              ||||||||||||||||||||
Sbjct: 100866 atattattaataatggttgg 100885

>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome
          Length = 3052398

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 443    cttgtcgtcgaagccttcct 462
              ||||||||||||||||||||
Sbjct: 994784 cttgtcgtcgaagccttcct 994765


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,392,122
Number of Sequences: 3902068
Number of extensions: 4392122
Number of successful extensions: 85235
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85065
Number of HSP's gapped (non-prelim): 167
length of query: 626
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 603
effective length of database: 17,143,297,704
effective search space: 10337408515512
effective search space used: 10337408515512
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)