ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags27k13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
2dbj|AP005321.2| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
3dbj|AK106846.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 2e-12
4dbj|AK063980.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 2e-12
5gb|AC016720.9| Homo sapiens BAC clone RP11-326G23 from 2, comple... 46 0.11
6gb|AC147888.2| Xenopus tropicalis clone CH216-151M23, complete s... 44 0.45
7gb|DP000017.1| Sus scrofa target 1 genomic scaffold 42 1.8
8gb|U58764.1| Caenorhabditis elegans cosmid M03E7, complete sequence 42 1.8
9gb|AC087180.2| Sus scrofa clone RP44-338P10, complete sequence 42 1.8
10gb|AC147161.2| Pan troglodytes BAC clone CH251-87A18 from Y, com... 42 1.8
11gb|AC146198.2| Pan troglodytes BAC clone CH251-475M5 from Y, com... 42 1.8
12gb|AC146515.2| Pan troglodytes BAC clone CH251-113M4 from Y, com... 42 1.8
13gb|AC146245.2| Pan troglodytes BAC clone RP43-31J1 from Y, compl... 42 1.8
14gb|AC142347.1| Pan troglodytes BAC clone RP43-3E11 from Y, compl... 42 1.8
15gb|AC105180.8| Homo sapiens chromosome 8, clone RP11-345J1, comp... 42 1.8
16dbj|BS000548.1| Pan troglodytes chromosome Y clone:PTB-232N16, c... 42 1.8
17dbj|BS000544.1| Pan troglodytes chromosome Y clone:PTB-214L09, c... 42 1.8
18dbj|BS000543.1| Pan troglodytes chromosome Y clone:PTB-197G21, c... 42 1.8
19dbj|BS000533.1| Pan troglodytes chromosome Y clone:PTB-069G14, c... 42 1.8
20dbj|BS000595.1| Pan troglodytes chromosome Y clone:PTB-109N05, c... 42 1.8
21gb|AC023678.4| Drosophila melanogaster 3L BAC RP98-14K14 (Roswel... 42 1.8
22gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 42 1.8
23gb|AC093437.2| Drosophila melanogaster 3L BAC RP98-5P17 (Roswell... 42 1.8
24ref|NG_003082.1| Homo sapiens RNA binding motif protein, Y-linke... 42 1.8
25gb|BT022774.1| Drosophila melanogaster IP13950 full insert cDNA 42 1.8
26gb|AC007320.3|AC007320 Homo sapiens BAC clone RP11-477B5 from Y,... 42 1.8
27gb|AC006991.3|AC006991 Homo sapiens BAC clone RP11-270H4 from Y,... 42 1.8
28gb|AC007274.3|AC007274 Homo sapiens BAC clone RP11-105L10 from Y... 42 1.8
29gb|AC007322.4|AC007322 Homo sapiens BAC clone RP11-553C13 from Y... 42 1.8
30gb|AC008175.2|AC008175 Homo sapiens BAC clone RP11-427G18 from Y... 42 1.8
31gb|AC023342.3|AC023342 Homo sapiens BAC clone RP11-95B23 from Y,... 42 1.8
32gb|AC009947.2|AC009947 Homo sapiens BAC clone RP11-39P20 from Y,... 42 1.8
33ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P... 42 1.8
34gb|AE003542.3| Drosophila melanogaster chromosome 3L, section 43... 42 1.8
35gb|AY667297.1| Ciona intestinalis isolate Japan 3 col5a1 gene, p... 40 7.0
36ref|XM_634180.1| Dictyostelium discoideum hypothetical protein (... 40 7.0
37gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 40 7.0
38gb|AC101831.7| Mus musculus chromosome 15, clone RP24-491D12, co... 40 7.0
39gb|L11247.1| Caenorhabditis elegans cosmid F09G8, complete sequence 40 7.0
40ref|NG_004832.1| Homo sapiens chromosome Y inverted repeat IR2, ... 40 7.0
41emb|CR352294.7| Zebrafish DNA sequence from clone CH211-188C24 i... 40 7.0
42emb|AJ011927.1|PST011927 Pseudomonas stutzeri fda gene and gene ... 40 7.0
43gb|AE014818.1| Plasmodium falciparum 3D7 chromosome 14 section 3... 40 7.0
44emb|AL357621.10| Human DNA sequence from clone RP11-636H20 on ch... 40 7.0
45gb|AC162364.6| Mus musculus chromosome 15, clone RP24-117M19, co... 40 7.0
46emb|BX284751.1|NCB24N11 Neurospora crassa DNA linkage group II B... 40 7.0
47gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 40 7.0
48gb|L10986.2| Caenorhabditis elegans cosmid F10E9, complete sequence 40 7.0
49gb|AC021518.12| Homo sapiens chromosome 8, clone RP11-313D2, com... 40 7.0
50gb|AC012535.11| Homo sapiens chromosome 8, clone RP11-115G12, co... 40 7.0
51gb|AC147845.3| Saimiri boliviensis boliviensis clone CH254-335K1... 40 7.0
52gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 7.0
53gb|AC010086.4|AC010086 Homo sapiens BAC clone RP11-209I11 from Y... 40 7.0
54gb|AC011362.2|AC011362 Homo sapiens chromosome 5 clone CTC-503K1... 40 7.0
55gb|AC008509.5|AC008509 Homo sapiens chromosome 5 clone CTC-449I1... 40 7.0
56emb|BX119982.8| Zebrafish DNA sequence from clone CH211-214J4 in... 40 7.0
57emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 7.0
58emb|CR589882.5| Zebrafish DNA sequence from clone CH211-221N23 i... 40 7.0
59gb|AC006288.1|AC006288 Homo sapiens chromosome 9, clone hRPK.295... 40 7.0
60gb|AE015451.1| Pseudomonas putida KT2440 complete genome 40 7.0 
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 95/113 (84%)
 Strand = Plus / Plus

                                                                            
Query: 373      ccatgcttcgcaatttttctctcaaggccggtcttgtcagcaccaacaaccttatcaatc 432
                |||||||  |||| ||| |||||||||||  ||||||||||||||||||| ||||| |||
Sbjct: 13996515 ccatgctgagcaactttcctctcaaggccattcttgtcagcaccaacaactttatcgatc 13996574

                                                                     
Query: 433      tctttgccgtttatcacacaggagaatgttggaacacttgagacattccagcg 485
                || || || ||  ||||| || |||||| ||||||||| ||||| ||||||||
Sbjct: 13996575 tcctttccattcctcacaaagaagaatgatggaacactggagacgttccagcg 13996627
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>dbj|AP005321.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0650H04
          Length = 134533

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 95/113 (84%)
 Strand = Plus / Plus

                                                                         
Query: 373   ccatgcttcgcaatttttctctcaaggccggtcttgtcagcaccaacaaccttatcaatc 432
             |||||||  |||| ||| |||||||||||  ||||||||||||||||||| ||||| |||
Sbjct: 98989 ccatgctgagcaactttcctctcaaggccattcttgtcagcaccaacaactttatcgatc 99048

                                                                  
Query: 433   tctttgccgtttatcacacaggagaatgttggaacacttgagacattccagcg 485
             || || || ||  ||||| || |||||| ||||||||| ||||| ||||||||
Sbjct: 99049 tcctttccattcctcacaaagaagaatgatggaacactggagacgttccagcg 99101
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>dbj|AK106846.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-118-A03, full
           insert sequence
          Length = 1842

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 95/113 (84%)
 Strand = Plus / Minus

                                                                       
Query: 373 ccatgcttcgcaatttttctctcaaggccggtcttgtcagcaccaacaaccttatcaatc 432
           |||||||  |||| ||| |||||||||||  ||||||||||||||||||| ||||| |||
Sbjct: 118 ccatgctgagcaactttcctctcaaggccattcttgtcagcaccaacaactttatcgatc 59

                                                                
Query: 433 tctttgccgtttatcacacaggagaatgttggaacacttgagacattccagcg 485
           || || || ||  ||||| || |||||| ||||||||| ||||| ||||||||
Sbjct: 58  tcctttccattcctcacaaagaagaatgatggaacactggagacgttccagcg 6
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>dbj|AK063980.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-D03, full
            insert sequence
          Length = 1350

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 95/113 (84%)
 Strand = Plus / Minus

                                                                        
Query: 373  ccatgcttcgcaatttttctctcaaggccggtcttgtcagcaccaacaaccttatcaatc 432
            |||||||  |||| ||| |||||||||||  ||||||||||||||||||| ||||| |||
Sbjct: 1114 ccatgctgagcaactttcctctcaaggccattcttgtcagcaccaacaactttatcgatc 1055

                                                                 
Query: 433  tctttgccgtttatcacacaggagaatgttggaacacttgagacattccagcg 485
            || || || ||  ||||| || |||||| ||||||||| ||||| ||||||||
Sbjct: 1054 tcctttccattcctcacaaagaagaatgatggaacactggagacgttccagcg 1002
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>gb|AC016720.9| Homo sapiens BAC clone RP11-326G23 from 2, complete sequence
          Length = 154318

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 115   ctttagttttgatggtaaacttt 137
             |||||||||||||||||||||||
Sbjct: 99988 ctttagttttgatggtaaacttt 99966
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>gb|AC147888.2| Xenopus tropicalis clone CH216-151M23, complete sequence
          Length = 146657

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 68    atatagttcattttagacagaa 89
             ||||||||||||||||||||||
Sbjct: 46474 atatagttcattttagacagaa 46453
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>gb|DP000017.1| Sus scrofa target 1 genomic scaffold
          Length = 1471440

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 158    taattccccatggaacatcaa 178
              |||||||||||||||||||||
Sbjct: 597463 taattccccatggaacatcaa 597483
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>gb|U58764.1| Caenorhabditis elegans cosmid M03E7, complete sequence
          Length = 14510

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 244  gtaaatacagagacaaccagaattt 268
            ||||||||||||| |||||||||||
Sbjct: 9915 gtaaatacagagaaaaccagaattt 9939
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>gb|AC087180.2| Sus scrofa clone RP44-338P10, complete sequence
          Length = 117818

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 158   taattccccatggaacatcaa 178
             |||||||||||||||||||||
Sbjct: 19825 taattccccatggaacatcaa 19845
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>gb|AC147161.2| Pan troglodytes BAC clone CH251-87A18 from Y, complete sequence
          Length = 183477

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 227   acataaattaatatatggtaa 247
             |||||||||||||||||||||
Sbjct: 86523 acataaattaatatatggtaa 86543
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>gb|AC146198.2| Pan troglodytes BAC clone CH251-475M5 from Y, complete sequence
          Length = 220557

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 227    acataaattaatatatggtaa 247
              |||||||||||||||||||||
Sbjct: 109408 acataaattaatatatggtaa 109388
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>gb|AC146515.2| Pan troglodytes BAC clone CH251-113M4 from Y, complete sequence
          Length = 183460

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 227  acataaattaatatatggtaa 247
            |||||||||||||||||||||
Sbjct: 4165 acataaattaatatatggtaa 4145
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>gb|AC146245.2| Pan troglodytes BAC clone RP43-31J1 from Y, complete sequence
          Length = 189042

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 227    acataaattaatatatggtaa 247
              |||||||||||||||||||||
Sbjct: 138192 acataaattaatatatggtaa 138172
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>gb|AC142347.1| Pan troglodytes BAC clone RP43-3E11 from Y, complete sequence
          Length = 152015

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 227   acataaattaatatatggtaa 247
             |||||||||||||||||||||
Sbjct: 96962 acataaattaatatatggtaa 96942
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>gb|AC105180.8| Homo sapiens chromosome 8, clone RP11-345J1, complete sequence
          Length = 174617

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 196   gtgtatgtgcatgcaccaggaccactaga 224
             |||||||| ||||||||||||| ||||||
Sbjct: 94437 gtgtatgtccatgcaccaggactactaga 94409
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>dbj|BS000548.1| Pan troglodytes chromosome Y clone:PTB-232N16, complete sequences
          Length = 157814

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 227  acataaattaatatatggtaa 247
            |||||||||||||||||||||
Sbjct: 6311 acataaattaatatatggtaa 6331
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>dbj|BS000544.1| Pan troglodytes chromosome Y clone:PTB-214L09, complete sequences
          Length = 199977

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 227   acataaattaatatatggtaa 247
             |||||||||||||||||||||
Sbjct: 54958 acataaattaatatatggtaa 54978
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>dbj|BS000543.1| Pan troglodytes chromosome Y clone:PTB-197G21, complete sequences
          Length = 154247

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 227   acataaattaatatatggtaa 247
             |||||||||||||||||||||
Sbjct: 82603 acataaattaatatatggtaa 82623
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>dbj|BS000533.1| Pan troglodytes chromosome Y clone:PTB-069G14, complete sequences
          Length = 136700

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 227   acataaattaatatatggtaa 247
             |||||||||||||||||||||
Sbjct: 82850 acataaattaatatatggtaa 82870
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>dbj|BS000595.1| Pan troglodytes chromosome Y clone:PTB-109N05, complete sequences
          Length = 72000

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 227   acataaattaatatatggtaa 247
             |||||||||||||||||||||
Sbjct: 28797 acataaattaatatatggtaa 28777
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>gb|AC023678.4| Drosophila melanogaster 3L BAC RP98-14K14 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 186990

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 6      tgaactgaaaatacataacaa 26
              |||||||||||||||||||||
Sbjct: 155017 tgaactgaaaatacataacaa 155037
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 227      acataaattaatatatggtaa 247
                |||||||||||||||||||||
Sbjct: 10763500 acataaattaatatatggtaa 10763520



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 227     acataaattaatatatggtaa 247
               |||||||||||||||||||||
Sbjct: 2794991 acataaattaatatatggtaa 2795011



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 227    acataaattaatatatggtaa 247
              |||||||||||||||||||||
Sbjct: 394220 acataaattaatatatggtaa 394200
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>gb|AC093437.2| Drosophila melanogaster 3L BAC RP98-5P17 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 197878

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 6     tgaactgaaaatacataacaa 26
             |||||||||||||||||||||
Sbjct: 64302 tgaactgaaaatacataacaa 64282
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>ref|NG_003082.1| Homo sapiens RNA binding motif protein, Y-linked, family 2, member H
            pseudogene (RBMY2HP) on chromosome Y
          Length = 6711

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 227  acataaattaatatatggtaa 247
            |||||||||||||||||||||
Sbjct: 2884 acataaattaatatatggtaa 2904
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>gb|BT022774.1| Drosophila melanogaster IP13950 full insert cDNA
          Length = 1937

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 6  tgaactgaaaatacataacaa 26
          |||||||||||||||||||||
Sbjct: 96 tgaactgaaaatacataacaa 76
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>gb|AC007320.3|AC007320 Homo sapiens BAC clone RP11-477B5 from Y, complete sequence
          Length = 187894

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 227    acataaattaatatatggtaa 247
              |||||||||||||||||||||
Sbjct: 124905 acataaattaatatatggtaa 124885
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>gb|AC006991.3|AC006991 Homo sapiens BAC clone RP11-270H4 from Y, complete sequence
          Length = 173242

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 227   acataaattaatatatggtaa 247
             |||||||||||||||||||||
Sbjct: 54859 acataaattaatatatggtaa 54879
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>gb|AC007274.3|AC007274 Homo sapiens BAC clone RP11-105L10 from Y, complete sequence
          Length = 117309

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 227   acataaattaatatatggtaa 247
             |||||||||||||||||||||
Sbjct: 81456 acataaattaatatatggtaa 81436
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>gb|AC007322.4|AC007322 Homo sapiens BAC clone RP11-553C13 from Y, complete sequence
          Length = 184215

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 227   acataaattaatatatggtaa 247
             |||||||||||||||||||||
Sbjct: 88220 acataaattaatatatggtaa 88200
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>gb|AC008175.2|AC008175 Homo sapiens BAC clone RP11-427G18 from Y, complete sequence
          Length = 205237

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 227    acataaattaatatatggtaa 247
              |||||||||||||||||||||
Sbjct: 200113 acataaattaatatatggtaa 200133
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>gb|AC023342.3|AC023342 Homo sapiens BAC clone RP11-95B23 from Y, complete sequence
          Length = 69354

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 227   acataaattaatatatggtaa 247
             |||||||||||||||||||||
Sbjct: 66703 acataaattaatatatggtaa 66723
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>gb|AC009947.2|AC009947 Homo sapiens BAC clone RP11-39P20 from Y, complete sequence
          Length = 149230

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 227    acataaattaatatatggtaa 247
              |||||||||||||||||||||
Sbjct: 110162 acataaattaatatatggtaa 110142
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>ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P3 and inverted repeat IR2
               (P1-P2-P3-IR2@) on chromosome Y
          Length = 4538292

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 227     acataaattaatatatggtaa 247
               |||||||||||||||||||||
Sbjct: 4313637 acataaattaatatatggtaa 4313657



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 227     acataaattaatatatggtaa 247
               |||||||||||||||||||||
Sbjct: 1735207 acataaattaatatatggtaa 1735187



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 227    acataaattaatatatggtaa 247
              |||||||||||||||||||||
Sbjct: 839208 acataaattaatatatggtaa 839228



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 227    acataaattaatatatggtaa 247
              |||||||||||||||||||||
Sbjct: 576306 acataaattaatatatggtaa 576286



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 227    acataaattaatatatggtaa 247
              |||||||||||||||||||||
Sbjct: 388340 acataaattaatatatggtaa 388360



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 227    acataaattaatatatggtaa 247
              |||||||||||||||||||||
Sbjct: 125415 acataaattaatatatggtaa 125395
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>gb|AE003542.3| Drosophila melanogaster chromosome 3L, section 43 of 83 of the complete
             sequence
          Length = 303022

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 6     tgaactgaaaatacataacaa 26
             |||||||||||||||||||||
Sbjct: 32095 tgaactgaaaatacataacaa 32075
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>gb|AY667297.1| Ciona intestinalis isolate Japan 3 col5a1 gene, partial cds
          Length = 4144

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 230  taaattaatatatggtaaat 249
            ||||||||||||||||||||
Sbjct: 2480 taaattaatatatggtaaat 2499
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>ref|XM_634180.1| Dictyostelium discoideum hypothetical protein (DDB0218425), partial
           mRNA
          Length = 3150

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 410 cagcaccaacaaccttatca 429
           ||||||||||||||||||||
Sbjct: 182 cagcaccaacaaccttatca 201
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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 201     tgtgcatgcaccaggaccac 220
               ||||||||||||||||||||
Sbjct: 5923068 tgtgcatgcaccaggaccac 5923049



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 201     tgtgcatgcaccaggaccac 220
               ||||||||||||||||||||
Sbjct: 5920540 tgtgcatgcaccaggaccac 5920521
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>gb|AC101831.7| Mus musculus chromosome 15, clone RP24-491D12, complete sequence
          Length = 129818

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 224   agcacataaattaatatatg 243
             ||||||||||||||||||||
Sbjct: 16594 agcacataaattaatatatg 16613
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>gb|L11247.1| Caenorhabditis elegans cosmid F09G8, complete sequence
          Length = 41645

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 283   caatttttattcataagcac 302
             ||||||||||||||||||||
Sbjct: 40119 caatttttattcataagcac 40138
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>ref|NG_004832.1| Homo sapiens chromosome Y inverted repeat IR2, centromeric (IR2@) on
             chromosome Y
          Length = 389013

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 229   ataaattaatatatggtaaa 248
             ||||||||||||||||||||
Sbjct: 90091 ataaattaatatatggtaaa 90072
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>emb|CR352294.7| Zebrafish DNA sequence from clone CH211-188C24 in linkage group 23,
             complete sequence
          Length = 146924

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                         
Query: 229   ataaattaatatatg-gtaaatacagag 255
             ||||||||||||||| ||||||||||||
Sbjct: 67061 ataaattaatatatgagtaaatacagag 67088
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>emb|AJ011927.1|PST011927 Pseudomonas stutzeri fda gene and gene encoding hypothetical
           protein
          Length = 1846

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 201 tgtgcatgcaccaggaccac 220
           ||||||||||||||||||||
Sbjct: 428 tgtgcatgcaccaggaccac 447
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>gb|AE014818.1| Plasmodium falciparum 3D7 chromosome 14 section 3 of 13 of the complete
             sequence
          Length = 252632

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 229   ataaattaatatatggtaaa 248
             ||||||||||||||||||||
Sbjct: 23042 ataaattaatatatggtaaa 23061
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>emb|AL357621.10| Human DNA sequence from clone RP11-636H20 on chromosome 6 Contains part
             of the PTPRK gene for protein tyrosine phosphatase
             receptor type K (R-PTP-KAPPA), complete sequence
          Length = 96839

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 56    tagtaacaagaaatatagtt 75
             ||||||||||||||||||||
Sbjct: 26589 tagtaacaagaaatatagtt 26570
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>gb|AC162364.6| Mus musculus chromosome 15, clone RP24-117M19, complete sequence
          Length = 164862

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 224   agcacataaattaatatatg 243
             ||||||||||||||||||||
Sbjct: 92645 agcacataaattaatatatg 92664
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>emb|BX284751.1|NCB24N11 Neurospora crassa DNA linkage group II BAC contig B24N11
          Length = 129306

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 227    acataaattaatatatggtaaata 250
              |||||||||||||||| |||||||
Sbjct: 121533 acataaattaatatatagtaaata 121510
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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 201     tgtgcatgcaccaggaccac 220
               ||||||||||||||||||||
Sbjct: 6588269 tgtgcatgcaccaggaccac 6588250
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>gb|L10986.2| Caenorhabditis elegans cosmid F10E9, complete sequence
          Length = 47233

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 283   caatttttattcataagcac 302
             ||||||||||||||||||||
Sbjct: 13174 caatttttattcataagcac 13193
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>gb|AC021518.12| Homo sapiens chromosome 8, clone RP11-313D2, complete sequence
          Length = 169566

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 276   tgtaggtcaatttttattca 295
             ||||||||||||||||||||
Sbjct: 55996 tgtaggtcaatttttattca 55977
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>gb|AC012535.11| Homo sapiens chromosome 8, clone RP11-115G12, complete sequence
          Length = 173414

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 276   tgtaggtcaatttttattca 295
             ||||||||||||||||||||
Sbjct: 69887 tgtaggtcaatttttattca 69868
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>gb|AC147845.3| Saimiri boliviensis boliviensis clone CH254-335K11, complete sequence
          Length = 222317

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 64    agaaatatagttcattttag 83
             ||||||||||||||||||||
Sbjct: 20539 agaaatatagttcattttag 20520
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 201    tgtgcatgcaccaggaccac 220
              ||||||||||||||||||||
Sbjct: 708597 tgtgcatgcaccaggaccac 708616
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>gb|AC010086.4|AC010086 Homo sapiens BAC clone RP11-209I11 from Y, complete sequence
          Length = 170935

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 229    ataaattaatatatggtaaa 248
              ||||||||||||||||||||
Sbjct: 113603 ataaattaatatatggtaaa 113584
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>gb|AC011362.2|AC011362 Homo sapiens chromosome 5 clone CTC-503K11, complete sequence
          Length = 176029

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 62     caagaaatatagttcatttt 81
              ||||||||||||||||||||
Sbjct: 132826 caagaaatatagttcatttt 132807
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>gb|AC008509.5|AC008509 Homo sapiens chromosome 5 clone CTC-449I11, complete sequence
          Length = 189456

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 62     caagaaatatagttcatttt 81
              ||||||||||||||||||||
Sbjct: 146068 caagaaatatagttcatttt 146087
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>emb|BX119982.8| Zebrafish DNA sequence from clone CH211-214J4 in linkage group 23,
             complete sequence
          Length = 210702

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                         
Query: 229   ataaattaatatatg-gtaaatacagag 255
             ||||||||||||||| ||||||||||||
Sbjct: 47803 ataaattaatatatgagtaaatacagag 47830
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 201     tgtgcatgcaccaggaccac 220
               ||||||||||||||||||||
Sbjct: 5331283 tgtgcatgcaccaggaccac 5331264
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>emb|CR589882.5| Zebrafish DNA sequence from clone CH211-221N23 in linkage group 13,
             complete sequence
          Length = 205759

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 236   aatatatggtaaatacagagacaa 259
             |||||||||||||| |||||||||
Sbjct: 35610 aatatatggtaaattcagagacaa 35587
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>gb|AC006288.1|AC006288 Homo sapiens chromosome 9, clone hRPK.295_D_22, complete sequence
          Length = 220218

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 252    agagacaaccagaatttcca 271
              ||||||||||||||||||||
Sbjct: 116745 agagacaaccagaatttcca 116764
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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 201     tgtgcatgcaccaggaccac 220
               ||||||||||||||||||||
Sbjct: 5652232 tgtgcatgcaccaggaccac 5652213


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,688,405
Number of Sequences: 3902068
Number of extensions: 5688405
Number of successful extensions: 126945
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 126464
Number of HSP's gapped (non-prelim): 484
length of query: 516
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 493
effective length of database: 17,143,297,704
effective search space: 8451645768072
effective search space used: 8451645768072
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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