ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags27k11 |
|---|---|
| Clone Library Name | barley_pub |
>CY11_SOLTU (P25076) Cytochrome c1, heme protein, mitochondrial precursor| (Clone PC13III) Length = 320 Score = 140 bits (353), Expect = 2e-33 Identities = 69/83 (83%), Positives = 71/83 (85%) Frame = -2 Query: 490 AMPKMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXX 311 AMPKML DGA+EYEDG PATEAQMGKDVVSFLSWAAEPEMEERKLMG KWIF Sbjct: 238 AMPKMLNDGAVEYEDGIPATEAQMGKDVVSFLSWAAEPEMEERKLMGFKWIFVLSLALLQ 297 Query: 310 XAYYRRMRWSVLKSRKLVLDVVN 242 AYYRR+RWSVLKSRKLVLDVVN Sbjct: 298 AAYYRRLRWSVLKSRKLVLDVVN 320
>CY12_SOLTU (P29610) Cytochrome c1, heme protein, mitochondrial precursor| (Clone PC18I) (Fragment) Length = 260 Score = 139 bits (351), Expect = 3e-33 Identities = 68/83 (81%), Positives = 71/83 (85%) Frame = -2 Query: 490 AMPKMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXX 311 AMPKML DGA+EYEDG PATEAQMGKDVVSFL+WAAEPEMEERKLMG KWIF Sbjct: 178 AMPKMLNDGAVEYEDGVPATEAQMGKDVVSFLTWAAEPEMEERKLMGFKWIFVLSLALLQ 237 Query: 310 XAYYRRMRWSVLKSRKLVLDVVN 242 AYYRR+RWSVLKSRKLVLDVVN Sbjct: 238 AAYYRRLRWSVLKSRKLVLDVVN 260
>CY1_NEUCR (P07142) Cytochrome c1, heme protein, mitochondrial precursor| Length = 332 Score = 93.2 bits (230), Expect = 3e-19 Identities = 42/80 (52%), Positives = 57/80 (71%) Frame = -2 Query: 490 AMPKMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXX 311 AM ++L DG ++YEDGTPA+ +QM KDVV FL+WAAEPEM++RK MG+K + Sbjct: 233 AMARVLYDGLVDYEDGTPASTSQMAKDVVEFLNWAAEPEMDDRKRMGMKVLVVTSVLFAL 292 Query: 310 XAYYRRMRWSVLKSRKLVLD 251 Y +R +W+ LKSRK+V D Sbjct: 293 SVYVKRYKWAWLKSRKIVYD 312
>CY1_YEAST (P07143) Cytochrome c1, heme protein, mitochondrial precursor| Length = 309 Score = 82.0 bits (201), Expect = 8e-16 Identities = 35/80 (43%), Positives = 53/80 (66%) Frame = -2 Query: 490 AMPKMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXX 311 AM ++L D +EYEDGTPAT +QM KDV +FL+W AEPE +ERK +G+K + Sbjct: 224 AMARVLFDDMVEYEDGTPATTSQMAKDVTTFLNWCAEPEHDERKRLGLKTVIILSSLYLL 283 Query: 310 XAYYRRMRWSVLKSRKLVLD 251 + ++ +W+ +K+RK V + Sbjct: 284 SIWVKKFKWAGIKTRKFVFN 303
>CY1_KLULA (Q00988) Cytochrome c1, heme protein, mitochondrial precursor| Length = 292 Score = 80.9 bits (198), Expect = 2e-15 Identities = 35/80 (43%), Positives = 53/80 (66%) Frame = -2 Query: 490 AMPKMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXX 311 AM ++L D +EYEDGTPAT +QM KDV +FL W +EPE +ERK +G+K + Sbjct: 209 AMGRVLFDDLVEYEDGTPATTSQMAKDVTTFLHWCSEPEHDERKRLGLKAMIVLSSLYLL 268 Query: 310 XAYYRRMRWSVLKSRKLVLD 251 + ++ +W+ +KSRK+V + Sbjct: 269 SVWVKKFKWASIKSRKIVFN 288
>CY1_MOUSE (Q9D0M3) Cytochrome c1, heme protein, mitochondrial precursor| (Cytochrome c-1) Length = 325 Score = 73.2 bits (178), Expect = 4e-13 Identities = 34/67 (50%), Positives = 45/67 (67%) Frame = -2 Query: 460 IEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXXAYYRRMRWS 281 +EY+DGTPAT +Q+ KDV +FL WA+EPE + RK MG+K + +R +WS Sbjct: 253 LEYDDGTPATMSQVAKDVATFLRWASEPEHDHRKRMGLKMLLMMGLLLPLTYAMKRHKWS 312 Query: 280 VLKSRKL 260 VLKSRKL Sbjct: 313 VLKSRKL 319
>CY1_HUMAN (P08574) Cytochrome c1, heme protein, mitochondrial precursor| (Cytochrome c-1) Length = 325 Score = 72.8 bits (177), Expect = 5e-13 Identities = 35/77 (45%), Positives = 48/77 (62%) Frame = -2 Query: 490 AMPKMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXX 311 AM + +E++DGTPAT +Q+ KDV +FL WA+EPE + RK MG+K + Sbjct: 243 AMAPPIYTDVLEFDDGTPATMSQIAKDVCTFLRWASEPEHDHRKRMGLKMLMMMALLVPL 302 Query: 310 XAYYRRMRWSVLKSRKL 260 +R +WSVLKSRKL Sbjct: 303 VYTIKRHKWSVLKSRKL 319
>CY1_BOVIN (P00125) Cytochrome c1, heme protein, mitochondrial (Cytochrome| c-1) Length = 241 Score = 72.4 bits (176), Expect = 6e-13 Identities = 35/76 (46%), Positives = 48/76 (63%) Frame = -2 Query: 487 MPKMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXX 308 M + + +E++DGTPAT +Q+ KDV +FL WAAEPE + RK MG+K + Sbjct: 160 MAPPIYNEVLEFDDGTPATMSQVAKDVCTFLRWAAEPEHDHRKRMGLKMLLMMGLLLPLV 219 Query: 307 AYYRRMRWSVLKSRKL 260 +R +WSVLKSRKL Sbjct: 220 YAMKRHKWSVLKSRKL 235
>CY1_EUGGR (P20114) Cytochrome c1, heme protein| Length = 243 Score = 70.5 bits (171), Expect = 2e-12 Identities = 36/82 (43%), Positives = 43/82 (52%) Frame = -2 Query: 487 MPKMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXX 308 MP L D IEYEDGTPA+ QM KDV FL W + P +ERKL+G K I Sbjct: 159 MPPPLTDDMIEYEDGTPASVPQMAKDVTCFLEWCSNPWWDERKLLGYKTIATLAVIAVSS 218 Query: 307 AYYRRMRWSVLKSRKLVLDVVN 242 YY R + +SR+L N Sbjct: 219 GYYNRFLSGLWRSRRLAFRPFN 240
>CY1_RHORU (P23135) Cytochrome c1 precursor| Length = 272 Score = 65.1 bits (157), Expect = 1e-10 Identities = 29/49 (59%), Positives = 39/49 (79%) Frame = -2 Query: 490 AMPKMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVK 344 +MP LMD I YEDGT AT+ QM +DVV++L+WAAEPE++ RK +G+K Sbjct: 199 SMPPPLMDDLITYEDGTAATKDQMAQDVVAYLNWAAEPELDARKSLGLK 247
>CYBC_BRAJA (P51131) Cytochrome b/c1 [Contains: Cytochrome b; Cytochrome c1]| Length = 687 Score = 63.2 bits (152), Expect = 4e-10 Identities = 28/46 (60%), Positives = 33/46 (71%) Frame = -2 Query: 487 MPKMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMG 350 MPK L DG + Y+DG+PAT AQ KDV +FL W AEP ME RK +G Sbjct: 616 MPKPLSDGQVTYDDGSPATVAQYSKDVTTFLMWTAEPHMEARKRLG 661
>CY1_RHOCA (P08501) Cytochrome c1 precursor| Length = 279 Score = 59.3 bits (142), Expect = 5e-09 Identities = 30/75 (40%), Positives = 40/75 (53%) Frame = -2 Query: 487 MPKMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXX 308 MP L+D + YEDGTPAT QM +DV +FL WAAEP++ RK MG+ + Sbjct: 204 MPPPLVDDQVTYEDGTPATVDQMAQDVSAFLMWAAEPKLVARKQMGLVAMVMLGLLSVML 263 Query: 307 AYYRRMRWSVLKSRK 263 + W+ K K Sbjct: 264 YLTNKRLWAPYKGHK 278
>CY1_PARDE (P13627) Cytochrome c1 precursor| Length = 450 Score = 54.3 bits (129), Expect = 2e-07 Identities = 27/72 (37%), Positives = 35/72 (48%) Frame = -2 Query: 487 MPKMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXX 308 M L D + YEDGTPAT QM DV +FL W AEP+M +RK +G + Sbjct: 373 MAAPLSDDQVTYEDGTPATVDQMATDVAAFLMWTAEPKMMDRKQVGFVSVIFLIVLAALL 432 Query: 307 AYYRRMRWSVLK 272 + W +K Sbjct: 433 YLTNKKLWQPIK 444
>CY1_RHOSH (Q02760) Cytochrome c1 precursor| Length = 285 Score = 52.8 bits (125), Expect = 5e-07 Identities = 27/76 (35%), Positives = 38/76 (50%) Frame = -2 Query: 490 AMPKMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXX 311 AMP LMD +EY DG A+ M +DV +FL WAAEP++ RK G + Sbjct: 206 AMPPPLMDDLVEYADGHDASVHAMAEDVSAFLMWAAEPKLMARKQAGFTAVMFLTVLSVL 265 Query: 310 XAYYRRMRWSVLKSRK 263 + W+ +K +K Sbjct: 266 LYLTNKRLWAGVKGKK 281
>CY1_RHOVI (P81379) Cytochrome c1 precursor| Length = 282 Score = 52.8 bits (125), Expect = 5e-07 Identities = 23/46 (50%), Positives = 30/46 (65%) Frame = -2 Query: 487 MPKMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMG 350 M + DG + Y DGTP T+ Q KDV +FL WAAEP ++ RK +G Sbjct: 207 MTPPIADGLVTYGDGTPETQLQYSKDVAAFLMWAAEPTLDVRKRIG 252
>RSH1_MAIZE (Q41853) Homeobox protein rough sheath 1| Length = 351 Score = 30.0 bits (66), Expect = 3.5 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 17/91 (18%) Frame = +2 Query: 32 IRYQLAKKYSKITAPLREMLLQQRKKTKEIVPK------V*W-----------ETTRVAK 160 ++YQL KKYS + LR+ +++KK K +PK + W ET ++A Sbjct: 233 LKYQLLKKYSGYLSSLRQEFSKKKKKGK--LPKEARQKLLHWWELHYKWPYPSETEKIA- 289 Query: 161 YTTESPYFDRFCLKTRCCNRKKKQWSLVDDV 253 ES D+ + N++K+ W +D+ Sbjct: 290 -LAESTGLDQKQINNWFINQRKRHWKPSEDM 319
>KNAT1_ARATH (P46639) Homeobox protein knotted-1-like 1 (KNAT1)| Length = 398 Score = 29.3 bits (64), Expect = 6.0 Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 15/105 (14%) Frame = +2 Query: 32 IRYQLAKKYSKITAPLREMLLQQRKKTKEIVPK-------V*WETTRVAKYTTESPY--- 181 ++ L KKYS + L++ L +++KK K +PK WE Y +ES Sbjct: 280 LKNHLLKKYSGYLSSLKQELSKKKKKGK--LPKEARQKLLTWWELHYKWPYPSESEKVAL 337 Query: 182 -----FDRFCLKTRCCNRKKKQWSLVDDVQDQLAGLEDRPPHATV 301 D+ + N++K+ W +D+Q + P HA + Sbjct: 338 AESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLQHPHHAAL 382 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,678,597 Number of Sequences: 219361 Number of extensions: 1367545 Number of successful extensions: 3574 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 3487 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3572 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3478785780 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
