ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags27k06 |
|---|---|
| Clone Library Name | barley_pub |
>S23A2_MOUSE (Q9EPR4) Solute carrier family 23 member 2 (Sodium-dependent| vitamin C transporter 2) (mSVCT2) (Na(+)/L-ascorbic acid transporter 2) (Yolk sac permease-like molecule 2) Length = 647 Score = 60.1 bits (144), Expect = 6e-09 Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 1/137 (0%) Frame = -3 Query: 645 SVLCFTWALIVALGLSTLRYTEAVSSRNMIIVGFTLFISLSIPAYFQQYEPSSNLILPGY 466 ++ C + +I A+GLS L++ + SSRN+ ++GF++F L +P+Y +Q Sbjct: 486 ALFCTLFGMITAVGLSNLQFIDLNSSRNLFVLGFSIFFGLVLPSYLRQ------------ 533 Query: 465 LLPYAAASSGPVHTASYGLNYXXXXXXXXXXXXXXXXXXXLDNTVPGSKQERGVYIWSDP 286 P+ T G++ LDNT+PG+ +ERG+ W Sbjct: 534 ---------NPLVTGITGIDQILNVLLTTAMFVGGCVAFILDNTIPGTPEERGIKKWKKG 584 Query: 285 KSL-ELDLASLEPYRLP 238 S L +E Y LP Sbjct: 585 VSKGSKSLDGMESYNLP 601
>S23A2_RAT (Q9WTW8) Solute carrier family 23 member 2 (Sodium-dependent| vitamin C transporter 2) (Na(+)/L-ascorbic acid transporter 2) Length = 592 Score = 60.1 bits (144), Expect = 6e-09 Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 1/137 (0%) Frame = -3 Query: 645 SVLCFTWALIVALGLSTLRYTEAVSSRNMIIVGFTLFISLSIPAYFQQYEPSSNLILPGY 466 ++ C + +I A+GLS L++ + SSRN+ ++GF++F L +P+Y +Q Sbjct: 431 ALFCTLFGMITAVGLSNLQFIDLNSSRNLFVLGFSIFFGLVLPSYLRQ------------ 478 Query: 465 LLPYAAASSGPVHTASYGLNYXXXXXXXXXXXXXXXXXXXLDNTVPGSKQERGVYIWSDP 286 P+ T G++ LDNT+PG+ +ERG+ W Sbjct: 479 ---------NPLVTGITGIDQVLNVLLTTAMFVGGCVAFILDNTIPGTPEERGIKKWKKG 529 Query: 285 KSL-ELDLASLEPYRLP 238 S L +E Y LP Sbjct: 530 VSKGNKSLDGMESYNLP 546
>S23A2_HUMAN (Q9UGH3) Solute carrier family 23 member 2 (Sodium-dependent| vitamin C transporter 2) (hSVCT2) (Na(+)/L-ascorbic acid transporter 2) (Yolk sac permease-like molecule 2) (Nucleobase transporter-like 1 protein) Length = 650 Score = 58.5 bits (140), Expect = 2e-08 Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 1/137 (0%) Frame = -3 Query: 645 SVLCFTWALIVALGLSTLRYTEAVSSRNMIIVGFTLFISLSIPAYFQQYEPSSNLILPGY 466 ++ C + +I A+GLS L++ + SSRN+ ++GF++F L +P+Y +Q Sbjct: 489 ALFCTLFGMITAVGLSNLQFIDLNSSRNLFVLGFSIFFGLVLPSYLRQ------------ 536 Query: 465 LLPYAAASSGPVHTASYGLNYXXXXXXXXXXXXXXXXXXXLDNTVPGSKQERGVYIWSDP 286 P+ T G++ LDNT+PG+ +ERG+ W Sbjct: 537 ---------NPLVTGITGIDQVLNVLLTTAMFVGGCVAFILDNTIPGTPEERGIRKWKKG 587 Query: 285 KSL-ELDLASLEPYRLP 238 L +E Y LP Sbjct: 588 VGKGNKSLDGMESYNLP 604
>S23A1_HUMAN (Q9UHI7) Solute carrier family 23 member 1 (Sodium-dependent| vitamin C transporter 1) (hSVCT1) (Na(+)/L-ascorbic acid transporter 1) (Yolk sac permease-like molecule 3) Length = 598 Score = 58.5 bits (140), Expect = 2e-08 Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 1/136 (0%) Frame = -3 Query: 642 VLCFTWALIVALGLSTLRYTEAVSSRNMIIVGFTLFISLSIPAYFQQYEPSSNLILPGYL 463 + C + +I A+GLS L++ + SSRN+ ++GF++F L++P Y + Sbjct: 431 MFCTLFGMITAVGLSNLQFVDMNSSRNLFVLGFSMFFGLTLPNYLE-------------- 476 Query: 462 LPYAAASSGPVHTASYGLNYXXXXXXXXXXXXXXXXXXXLDNTVPGSKQERGVYIWSDPK 283 ++ G ++T ++ LDNTVPGS +ERG+ W Sbjct: 477 -----SNPGAINTGILEVDQILIVLLTTEMFVGGCLAFILDNTVPGSPEERGLIQWKAGA 531 Query: 282 SLELDL-ASLEPYRLP 238 D+ +SL+ Y P Sbjct: 532 HANSDMSSSLKSYDFP 547
>S23A1_RAT (Q9WTW7) Solute carrier family 23 member 1 (Sodium-dependent| vitamin C transporter 1) (Na(+)/L-ascorbic acid transporter 1) Length = 604 Score = 57.8 bits (138), Expect = 3e-08 Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 1/136 (0%) Frame = -3 Query: 642 VLCFTWALIVALGLSTLRYTEAVSSRNMIIVGFTLFISLSIPAYFQQYEPSSNLILPGYL 463 + C + +I A+GLS L++ + SSRN+ ++GF++F L++P Y Sbjct: 438 MFCTLFGMITAVGLSNLQFVDMNSSRNLFVLGFSMFFGLTLPNYLD-------------- 483 Query: 462 LPYAAASSGPVHTASYGLNYXXXXXXXXXXXXXXXXXXXLDNTVPGSKQERGVYIWSDPK 283 ++ G ++T ++ LDNTVPGS +ERG+ W Sbjct: 484 -----SNPGAINTGVPEVDQILTVLLTTEMFVGGCLAFILDNTVPGSPEERGLIQWKAGA 538 Query: 282 SLELD-LASLEPYRLP 238 + LASL+ Y P Sbjct: 539 HANSETLASLKSYDFP 554
>S23A1_MOUSE (Q9Z2J0) Solute carrier family 23 member 1 (Sodium-dependent| vitamin C transporter 1) (Na(+)/L-ascorbic acid transporter 1) (Yolk sac permease-like molecule 3) Length = 605 Score = 55.8 bits (133), Expect = 1e-07 Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 1/136 (0%) Frame = -3 Query: 642 VLCFTWALIVALGLSTLRYTEAVSSRNMIIVGFTLFISLSIPAYFQQYEPSSNLILPGYL 463 + C + +I A+GLS L++ + SSRN+ ++GF++F L++P Y Sbjct: 438 MFCTLFGMITAVGLSNLQFVDMNSSRNLFVLGFSMFFGLTLPNYLD-------------- 483 Query: 462 LPYAAASSGPVHTASYGLNYXXXXXXXXXXXXXXXXXXXLDNTVPGSKQERGVYIWSDPK 283 ++ G ++T ++ LDNTVPGS +ERG+ W Sbjct: 484 -----SNPGAINTGIPEVDQILTVLLTTEMFVGGCLAFILDNTVPGSPEERGLIQWKAGA 538 Query: 282 SLELDL-ASLEPYRLP 238 + ASL+ Y P Sbjct: 539 HANSETSASLKSYDFP 554
>NOSO_STAAW (P0A094) Nitric oxide synthase oxygenase (EC 1.-.-.-) (NOSoxy-like| protein) (SANOS) Length = 358 Score = 31.2 bits (69), Expect = 2.8 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = -1 Query: 317 KNEAYTSGQIPSPWSWILHPWNPTGYQIRYHAGSD 213 +NEA Q+ WSW+ P +PT YH G D Sbjct: 301 RNEAQQGRQVTGKWSWLAPPLSPT-LTSNYHHGYD 334
>NOSO_STAAU (P0A004) Nitric oxide synthase oxygenase (EC 1.-.-.-) (NOSoxy-like| protein) (SANOS) Length = 358 Score = 31.2 bits (69), Expect = 2.8 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = -1 Query: 317 KNEAYTSGQIPSPWSWILHPWNPTGYQIRYHAGSD 213 +NEA Q+ WSW+ P +PT YH G D Sbjct: 301 RNEAQQGRQVTGKWSWLAPPLSPT-LTSNYHHGYD 334
>NOSO_STAAS (Q6G818) Nitric oxide synthase oxygenase (EC 1.-.-.-) (NOSoxy-like| protein) (SANOS) Length = 358 Score = 31.2 bits (69), Expect = 2.8 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = -1 Query: 317 KNEAYTSGQIPSPWSWILHPWNPTGYQIRYHAGSD 213 +NEA Q+ WSW+ P +PT YH G D Sbjct: 301 RNEAQQGRQVTGKWSWLAPPLSPT-LTSNYHHGYD 334
>NOSO_STAAR (Q6GFE2) Nitric oxide synthase oxygenase (EC 1.-.-.-) (NOSoxy-like| protein) (SANOS) Length = 358 Score = 31.2 bits (69), Expect = 2.8 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = -1 Query: 317 KNEAYTSGQIPSPWSWILHPWNPTGYQIRYHAGSD 213 +NEA Q+ WSW+ P +PT YH G D Sbjct: 301 RNEAQQGRQVTGKWSWLAPPLSPT-LTSNYHHGYD 334
>NOSO_STAAN (P0A093) Nitric oxide synthase oxygenase (EC 1.-.-.-) (NOSoxy-like| protein) (SANOS) Length = 358 Score = 31.2 bits (69), Expect = 2.8 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = -1 Query: 317 KNEAYTSGQIPSPWSWILHPWNPTGYQIRYHAGSD 213 +NEA Q+ WSW+ P +PT YH G D Sbjct: 301 RNEAQQGRQVTGKWSWLAPPLSPT-LTSNYHHGYD 334
>NOSO_STAAM (P0A092) Nitric oxide synthase oxygenase (EC 1.-.-.-) (NOSoxy-like| protein) (SANOS) Length = 358 Score = 31.2 bits (69), Expect = 2.8 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = -1 Query: 317 KNEAYTSGQIPSPWSWILHPWNPTGYQIRYHAGSD 213 +NEA Q+ WSW+ P +PT YH G D Sbjct: 301 RNEAQQGRQVTGKWSWLAPPLSPT-LTSNYHHGYD 334
>NOSO_STAAC (Q5HEK7) Nitric oxide synthase oxygenase (EC 1.-.-.-) (NOSoxy-like| protein) (SANOS) Length = 358 Score = 31.2 bits (69), Expect = 2.8 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = -1 Query: 317 KNEAYTSGQIPSPWSWILHPWNPTGYQIRYHAGSD 213 +NEA Q+ WSW+ P +PT YH G D Sbjct: 301 RNEAQQGRQVTGKWSWLAPPLSPT-LTSNYHHGYD 334
>KLK1_MACFA (Q07276) Kallikrein-1 precursor (EC 3.4.21.35) (Tissue kallikrein)| (Kidney/pancreas/salivary gland kallikrein) Length = 257 Score = 30.8 bits (68), Expect = 3.6 Identities = 23/90 (25%), Positives = 40/90 (44%) Frame = +3 Query: 243 TGRVPGMQDPTPGTWDLTRCIRLVLACFPALCCQGLLQQPEPPQR*WIEEHSLHSLAHNW 422 TGR P +Q G W+ ++ + L F C G+L P+ W+ + H ++ N+ Sbjct: 15 TGRAPPIQSRIVGGWECSQPWQAALYHFSTFQCGGILVHPQ-----WVLT-AAHCISDNY 68 Query: 423 QCELVHSKLQHTEEDSPVE*DWSWVRIAES 512 Q L L E+ + +V ++ES Sbjct: 69 QLWLGRHNLFDDEDTA------QFVHVSES 92
>G6PI_SHEON (Q8EBH1) Glucose-6-phosphate isomerase (EC 5.3.1.9) (GPI)| (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) Length = 545 Score = 30.8 bits (68), Expect = 3.6 Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 3/73 (4%) Frame = -3 Query: 615 VALGLSTLRYTEAVSSRNMIIVGFTLFISLSIPAYFQQYEPSSN---LILPGYLLPYAAA 445 V +GL +L Y ++++ +++ + ++ +PAYFQQ + SN + L G + Y Sbjct: 311 VIMGLLSLWYGNFFNAQSHVVLTYDHYLR-GLPAYFQQLDMESNGKSVTLNGTHVDY--- 366 Query: 444 SSGPVHTASYGLN 406 S+GPV G N Sbjct: 367 STGPVIWGGEGTN 379
>ENTD_SALAS (Q53636) 4'-phosphopantetheinyl transferase entD (EC 2.7.8.-)| (Enterobactin synthetase component D) (Enterochelin synthase D) Length = 232 Score = 30.4 bits (67), Expect = 4.8 Identities = 18/57 (31%), Positives = 25/57 (43%) Frame = -2 Query: 601 IHIAIYRSCKLKEHDNRWFYPVHLPVHPRILSAIRTQLQSHSTGLSSSVCCSFEWTS 431 +HI + + EHD W LP H R+ SA R + H G ++V W S Sbjct: 15 LHIVDFDASSFHEHDLLW-----LPHHDRLRSAGRKRKAEHLAGRIAAVHALRRWAS 66
>O5AY1_HUMAN (Q8NGZ2) Olfactory receptor 5AY1| Length = 315 Score = 30.4 bits (67), Expect = 4.8 Identities = 15/57 (26%), Positives = 27/57 (47%) Frame = -1 Query: 209 LSALAIDIAWPPCTGCSCSEVVMRRFCILLQQFVWHSGRLVGAIATGGSFWVSVWSS 39 L+A++ D C C V+ R C+ L W + +G + T G+F ++ + S Sbjct: 113 LTAMSYDRYAAICCPLHCEAVMSRGLCVQLMALSWLNRGALGLLYTAGTFSLNFYGS 169
>CV106_HUMAN (Q6P0N0) Protein C14orf106 (P243)| Length = 1132 Score = 30.0 bits (66), Expect = 6.2 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%) Frame = +1 Query: 22 FKFTCN--ELQTETQNEPPVAIAPTNLPECHTNCCNRIQNLRITTSEHEQPVQGGHAMSI 195 + F C+ EL++ +E P A T L CH+NC N+ LR + +Q G + Sbjct: 524 YDFDCDNLELKSNKHSESPGA---TELNMCHSNCQNK-PTLRFPDDQVNNTIQNGGGDDL 579 Query: 196 AN 201 +N Sbjct: 580 SN 581
>YQ12_CAEEL (Q09449) Hypothetical ATP-dependent helicase C05C10.2 in chromosome| II (EC 3.6.1.-) Length = 1551 Score = 30.0 bits (66), Expect = 6.2 Identities = 12/31 (38%), Positives = 17/31 (54%) Frame = +1 Query: 22 FKFTCNELQTETQNEPPVAIAPTNLPECHTN 114 FKFTCN + + P+++ NL E TN Sbjct: 391 FKFTCNGMASVVSTNEPMSVILNNLTEAKTN 421
>ITB1_HUMAN (P05556) Integrin beta-1 precursor (Fibronectin receptor beta| subunit) (Integrin VLA-4 beta subunit) (CD29 antigen) Length = 798 Score = 30.0 bits (66), Expect = 6.2 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 2/37 (5%) Frame = -2 Query: 472 GLSSSVCCSFEWTSSH--CQLWAKLCSECSSIHQRCG 368 GL SSVCC F T + + AK C EC CG Sbjct: 10 GLISSVCCVFAQTDENRCLKANAKSCGECIQAGPNCG 46
>Y976_TREPA (O83941) Hypothetical protein TP0976| Length = 459 Score = 29.6 bits (65), Expect = 8.1 Identities = 21/59 (35%), Positives = 28/59 (47%) Frame = -3 Query: 585 TEAVSSRNMIIVGFTLFISLSIPAYFQQYEPSSNLILPGYLLPYAAASSGPVHTASYGL 409 TEAVS ++V L + LS+PA + + S I LLP A S G + GL Sbjct: 18 TEAVSD---LLVSELLILGLSLPALLRPFSRQSRKISAIPLLPVLALSVGALTVLGQGL 73
>CRVP_AGKPI (Q7ZTA0) Piscivorin precursor| Length = 240 Score = 29.6 bits (65), Expect = 8.1 Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 5/78 (6%) Frame = -1 Query: 290 IPSPWSWILHPWNPTGYQIRYHAGSDGLSALA---IDIAW--PPCTGCSCSEVVMRRFCI 126 IP W+ I+H W+ +Y G+D +A+ I W GC+ + + Sbjct: 101 IPIKWTEIIHAWHGENKNFKYGIGADPPNAVIGHFTQIVWYKSYLVGCAAAYCPSSEYSY 160 Query: 125 LLQQFVWHSGRLVGAIAT 72 +G ++G IAT Sbjct: 161 FYVCQYCPAGNIIGKIAT 178
>OR2D3_HUMAN (Q8NGH3) Olfactory receptor 2D3| Length = 314 Score = 29.6 bits (65), Expect = 8.1 Identities = 16/61 (26%), Positives = 27/61 (44%) Frame = -1 Query: 209 LSALAIDIAWPPCTGCSCSEVVMRRFCILLQQFVWHSGRLVGAIATGGSFWVSVWSSLHV 30 L+ ++ D C S ++ +R C+ L W SG LV + T +F + W + Sbjct: 115 LAVMSYDRYVAVCKPLYYSTIMTQRVCLWLSFRSWASGALVSLVDTSFTFHLPYWGQNII 174 Query: 29 N 27 N Sbjct: 175 N 175
>DESR_DESBR (Q46495) Desulfoferrodoxin (EC 1.15.-.-) (Dfx) (Superoxide| reductase) (SOR) Length = 126 Score = 29.6 bits (65), Expect = 8.1 Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 10/95 (10%) Frame = +1 Query: 115 CCNR-----IQNLRITTSEHEQPV----QGGHAMSIANALSPSEPA*YLIW*PV-GFQGC 264 CCN+ +N E PV GG+ + + P E Y+ W + C Sbjct: 29 CCNQDMKLMSENTVDAAKEKHVPVIEKIDGGYKVKVGAVAHPMEEKHYIQWIELLADDKC 88 Query: 265 KIQLQGLGI*PDVYASFLLASRHCVVKDYCNNQSH 369 Q G P+ A FL+ + V ++YCN H Sbjct: 89 YTQFLKPGQAPE--AVFLIEAAKVVAREYCNIHGH 121 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 100,737,735 Number of Sequences: 219361 Number of extensions: 2269673 Number of successful extensions: 6062 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 5791 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6055 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6143359464 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
