ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags27k01 |
|---|---|
| Clone Library Name | barley_pub |
>MTAL1_KLULA (Q08398) Mating-type protein ALPHA1 (Transcription activator| Alpha1p) (MATalpha1 protein) Length = 261 Score = 30.4 bits (67), Expect = 1.0 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = +3 Query: 246 LQTIINTHVTSQKYTAQNWLLLTSQFLCGETPK 344 L TII+ H T K T +NW L+ ++ C + K Sbjct: 129 LSTIISKHWTVDKQTRKNWELIAQEYNCDASGK 161
>SCW11_YEAST (P53189) Probable family 17 glucosidase SCW11 precursor (EC| 3.2.1.-) (Soluble cell wall protein 11) Length = 542 Score = 29.6 bits (65), Expect = 1.8 Identities = 17/41 (41%), Positives = 23/41 (56%) Frame = +2 Query: 185 GSSKS*AAVAERPKSMASSFPPNNNQHSCNLAKIYSSKLAV 307 GSS S AA+ PK++A + P N+ SC A SS L + Sbjct: 269 GSSSSSAAITSSPKAIA--YSPYNDDGSCKSADAVSSDLTL 307
>PCYOX_PONPY (Q5R748) Prenylcysteine oxidase precursor (EC 1.8.3.5)| Length = 505 Score = 28.5 bits (62), Expect = 4.0 Identities = 12/55 (21%), Positives = 28/55 (50%) Frame = -2 Query: 308 QQPVLSCIFLRGYMSVDYCLEERKKPWILVSRRRRPNSCWSLGMNKAFFFSSSVK 144 Q+ + L+ ++S DY + KKPW+ + P C S+ ++ ++ + ++ Sbjct: 410 QETLTKAQILKLFLSYDYAV---KKPWLAYPHYKPPEKCPSIILHDRLYYLNGIE 461
>PCYOX_MACFA (Q95KC9) Prenylcysteine oxidase precursor (EC 1.8.3.5)| Length = 505 Score = 28.5 bits (62), Expect = 4.0 Identities = 12/55 (21%), Positives = 28/55 (50%) Frame = -2 Query: 308 QQPVLSCIFLRGYMSVDYCLEERKKPWILVSRRRRPNSCWSLGMNKAFFFSSSVK 144 Q+ + L+ ++S DY + KKPW+ + P C S+ ++ ++ + ++ Sbjct: 410 QETLTKAQILKLFLSYDYAV---KKPWLAYPHYKPPEKCPSIILHDRLYYLNGIE 461
>PCYOX_HUMAN (Q9UHG3) Prenylcysteine oxidase precursor (EC 1.8.3.5) (PCL1)| Length = 505 Score = 28.5 bits (62), Expect = 4.0 Identities = 12/55 (21%), Positives = 28/55 (50%) Frame = -2 Query: 308 QQPVLSCIFLRGYMSVDYCLEERKKPWILVSRRRRPNSCWSLGMNKAFFFSSSVK 144 Q+ + L+ ++S DY + KKPW+ + P C S+ ++ ++ + ++ Sbjct: 410 QETLTKAQILKLFLSYDYAV---KKPWLAYPHYKPPEKCPSIILHDRLYYLNGIE 461
>LGT_MANSM (Q65VJ7) Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-)| Length = 268 Score = 28.5 bits (62), Expect = 4.0 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 14/55 (25%) Frame = -2 Query: 230 WILVSRRRRPNSCWSLGMNKAFFFSSSV--------------KWDVFVSPPMLLF 108 W+ V R RP+S W++ F+ +WD+FV P LF Sbjct: 39 WLAVKRANRPDSGWTVEQVDNLLFNGFAGVFLGGRIGYVLFYQWDLFVQEPSYLF 93
>ATKA_SALTI (Q8Z8E4) Potassium-transporting ATPase A chain (EC 3.6.3.12)| (Potassium-translocating ATPase A chain) (ATP phosphohydrolase [potassium-transporting] A chain) (Potassium-binding and translocating subunit A) Length = 559 Score = 28.1 bits (61), Expect = 5.2 Identities = 9/33 (27%), Positives = 17/33 (51%) Frame = -2 Query: 230 WILVSRRRRPNSCWSLGMNKAFFFSSSVKWDVF 132 W+ ++ +R P W L +N A F ++ W + Sbjct: 86 WLPLNPQRLPGLSWDLALNTAVSFVTNTNWQAY 118
>ATKA_SALPA (Q5PCJ8) Potassium-transporting ATPase A chain (EC 3.6.3.12)| (Potassium-translocating ATPase A chain) (ATP phosphohydrolase [potassium-transporting] A chain) (Potassium-binding and translocating subunit A) Length = 559 Score = 28.1 bits (61), Expect = 5.2 Identities = 9/33 (27%), Positives = 17/33 (51%) Frame = -2 Query: 230 WILVSRRRRPNSCWSLGMNKAFFFSSSVKWDVF 132 W+ ++ +R P W L +N A F ++ W + Sbjct: 86 WLPLNPQRLPGLSWDLALNTAVSFVTNTNWQAY 118
>CNGC4_ARATH (Q94AS9) Cyclic nucleotide-gated ion channel 4 (AtCNGC4) (Cyclic| nucleotide-and calmodulin-regulated ion channel 4) (AtHLM1) Length = 694 Score = 27.7 bits (60), Expect = 6.8 Identities = 20/65 (30%), Positives = 28/65 (43%) Frame = -2 Query: 230 WILVSRRRRPNSCWSLGMNKAFFFSSSVKWDVFVSPPMLLFLFSSYTICNNVLWFWSILS 51 W+++ R P S W NK F + +FV P L L S T ++ W L+ Sbjct: 73 WMMLGRILDPRSKWVREWNKVFLLVCAT--GLFVDPLFLYTLSVSDTCMCLLVDGWLALT 130 Query: 50 VTIYR 36 VT R Sbjct: 131 VTALR 135
>NAD2_CAEEL (P32739) Sodium-dependent high-affinity dicarboxylate transporter 2| (Na(+)/dicarboxylate cotransporter 2) (NaDC-2) (ceNaDC2) Length = 551 Score = 27.7 bits (60), Expect = 6.8 Identities = 10/21 (47%), Positives = 15/21 (71%) Frame = -2 Query: 149 VKWDVFVSPPMLLFLFSSYTI 87 ++W VF PPM ++L +SY I Sbjct: 241 LQWMVFAIPPMFVYLLASYII 261
>YKG6_CAEEL (P46556) Hypothetical protein B0285.6 in chromosome III| Length = 577 Score = 27.3 bits (59), Expect = 8.8 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = -2 Query: 155 SSVKWDVFVSPPMLLFLFSSYTI 87 S + W F PPM+ ++FSS+ I Sbjct: 253 SYLSWMAFAIPPMIFYMFSSWFI 275
>TBP_BOMMO (O45211) TATA-box-binding protein (TATA-box factor) (TATA-binding| factor) (TATA sequence-binding protein) (Transcription initiation factor TFIID TBP subunit) Length = 307 Score = 27.3 bits (59), Expect = 8.8 Identities = 11/34 (32%), Positives = 21/34 (61%) Frame = +3 Query: 165 KSLVHSQAPARVRPPSPRDQNPWLLPFLQTIINT 266 + ++ +PA + P +P +P +LP LQ I++T Sbjct: 107 QQMLSQASPAPMTPLTPLSADPGILPQLQNIVST 140
>AFAD_HUMAN (P55196) Afadin (AF-6 protein)| Length = 1816 Score = 27.3 bits (59), Expect = 8.8 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 4/38 (10%) Frame = +3 Query: 129 HKNIPFDRRRKK----KSLVHSQAPARVRPPSPRDQNP 230 + + +RRR+ + L+ +AP RPP PRD P Sbjct: 1640 YSRLEAERRRQHDEAARRLLEPEAPGLCRPPLPRDYEP 1677
>MLZE_HUMAN (Q9BYG8) Melanoma-derived leucine zipper-containing extranuclear| factor Length = 508 Score = 27.3 bits (59), Expect = 8.8 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%) Frame = +3 Query: 234 LLPFLQTIINT--HVTSQKYTAQNWLLLTSQFLCGETPKL*RIH 359 LLP TI T + +S + L LT QFL G PK ++H Sbjct: 258 LLPSFHTISPTLFNASSNDMKLKPELFLTQQFLSGHLPKYEQVH 301 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,161,424 Number of Sequences: 219361 Number of extensions: 1115688 Number of successful extensions: 3252 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3192 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3252 length of database: 80,573,946 effective HSP length: 112 effective length of database: 56,005,514 effective search space used: 1344132336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
