ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags27j22 |
|---|---|
| Clone Library Name | barley_pub |
>TF2AA_PONPY (Q5RCU0) Transcription initiation factor IIA subunit 1 (General| transcription factor IIA1) [Contains: Transcription initiation factor IIA alpha chain (TFIIA p35 subunit); Transcription initiation factor IIA beta chain (TFIIA p19 subunit)] Length = 376 Score = 31.2 bits (69), Expect = 2.3 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%) Frame = -2 Query: 581 HHHQFHKMSQTIQEYGQSFQVLLPKALKLT--QKIVP 477 HHHQ + QT+ + Q+ QVL+P + + T Q IVP Sbjct: 85 HHHQQAQPQQTVPQQAQTQQVLIPASQQATAPQVIVP 121
>TF2AA_HUMAN (P52655) Transcription initiation factor IIA subunit 1 (General| transcription factor IIA1) (TFIIA-42) (TFIIAL) [Contains: Transcription initiation factor IIA alpha chain (TFIIA p35 subunit); Transcription initiation factor IIA beta chain (TFI Length = 376 Score = 31.2 bits (69), Expect = 2.3 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%) Frame = -2 Query: 581 HHHQFHKMSQTIQEYGQSFQVLLPKALKLT--QKIVP 477 HHHQ + QT+ + Q+ QVL+P + + T Q IVP Sbjct: 85 HHHQQAQPQQTVPQQAQTQQVLIPASQQATAPQVIVP 121
>TF2AA_RAT (O08949) Transcription initiation factor IIA subunit 1 (General| transcription factor IIA1) [Contains: Transcription initiation factor IIA alpha chain (TFIIA p35 subunit); Transcription initiation factor IIA beta chain (TFIIA p19 subunit)] Length = 377 Score = 31.2 bits (69), Expect = 2.3 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%) Frame = -2 Query: 581 HHHQFHKMSQTIQEYGQSFQVLLPKALKLT--QKIVP 477 HHHQ + QT+ + Q+ QVL+P + + T Q IVP Sbjct: 85 HHHQQAQPQQTVPQQAQTQQVLIPASQQATAPQVIVP 121
>YKV5_YEAST (P28273) Hypothetical 140.4 kDa protein in URA1-DOA1 intergenic| region Length = 1286 Score = 30.4 bits (67), Expect = 3.9 Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 4/96 (4%) Frame = -1 Query: 579 PSPVPQNVSNHTRIWSELSGVTPKSFEANAENCAQKERNGIANVL----NDTSVLPNTNA 412 P +P ++SN + + T + E N E CA G + L + N N Sbjct: 65 PRGIPLDISNVRSLRMGTTLATNCALERNGERCAFITTKGFKDSLLIGDQTRPDIFNLNI 124 Query: 411 PCKLPVTDNANHMEQPVQMDHFEEPPEVVVDNPRSQ 304 +P+ D +++ V ++ F E P +P Q Sbjct: 125 KKVVPLYDTVVEIDERVTLEDFSEDPYFTKSSPNEQ 160
>PROA_SYNY3 (P54902) Probable gamma-glutamyl phosphate reductase (GPR) (EC| 1.2.1.41) (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA dehydrogenase) Length = 433 Score = 29.3 bits (64), Expect = 8.6 Identities = 15/56 (26%), Positives = 25/56 (44%) Frame = -1 Query: 528 LSGVTPKSFEANAENCAQKERNGIANVLNDTSVLPNTNAPCKLPVTDNANHMEQPV 361 L+ P+ AN E+CA E GIA L + +L + + + H+ P+ Sbjct: 43 LTAAMPEILAANQEDCAAAEAMGIAKPLYNRLLLGESKLKSTIAGVKDVEHLPDPL 98
>TOXA_COCCA (Q00357) Putative HC-toxin efflux carrier TOXA| Length = 548 Score = 29.3 bits (64), Expect = 8.6 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 1/66 (1%) Frame = +2 Query: 386 LSVTGSLQGALVLGSTDVSFSTLAIPFLSFWAQFSALASKLL-GVTPESSDHILVWFETF 562 L + G++ G ++ +SF+ PF+ +++ S LL TP S ++ ++ Sbjct: 358 LPIVGAIIGVNIVAGITISFTGRLAPFIVIATVLASVGSGLLYTFTPTKSQARIIGYQLI 417 Query: 563 CGTGDG 580 G G G Sbjct: 418 YGAGSG 423 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 80,577,986 Number of Sequences: 219361 Number of extensions: 1540596 Number of successful extensions: 3705 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 3622 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3704 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4986986160 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
