ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags27j19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT009323.1| Triticum aestivum clone wlm24.pk0013.d6:fis, full... 167 4e-38
2emb|AL606646.3|OSJN00091 Oryza sativa genomic DNA, chromosome 4,... 44 0.41
3gb|AF383876.1|AF383876 Oryza sativa plastid division protein Fts... 44 0.41
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.41
5dbj|AK105869.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.41
6dbj|AK103448.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.41
7dbj|AK073455.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.41
8dbj|AK058568.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.41
9emb|Z81554.1|CEF57G4 Caenorhabditis elegans Cosmid F57G4, comple... 40 6.5
10gb|AC121929.2| Mus musculus BAC clone RP24-204J10 from 5, comple... 40 6.5
11emb|AL596444.10| Mouse DNA sequence from clone RP23-354D12 on ch... 40 6.5
12dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 6.5
13ref|NM_075056.1| Caenorhabditis elegans F57G4.1 (F57G4.1) mRNA, ... 40 6.5
14dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
15dbj|AP004366.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
16gb|AC133519.3| Mus musculus BAC clone RP23-178N8 from chromosome... 40 6.5
17emb|AL513423.3|HS518K17 Homo sapiens chromosome 9 BAC RP11-518K1... 40 6.5
18emb|AL627328.17| Mouse DNA sequence from clone RP23-299J22 on ch... 40 6.5

>gb|BT009323.1| Triticum aestivum clone wlm24.pk0013.d6:fis, full insert mRNA
            sequence
          Length = 1560

 Score =  167 bits (84), Expect = 4e-38
 Identities = 173/202 (85%), Gaps = 8/202 (3%)
 Strand = Plus / Minus

                                                                        
Query: 284  tctctactgccttgataaagtgagaaccacagcttcacaa------ggttgtttgtgcct 337
            |||||||||||| || ||||||||||||||||| ||||||      |||||||||  |||
Sbjct: 1348 tctctactgcctcgagaaagtgagaaccacagcctcacaatcgcaaggttgtttg--cct 1291

                                                                        
Query: 338  gctgaacggtgttcaggagaagagcctccgcgaccatgtcgggacggccgccggcgtcgg 397
            ||||||| |||||||||||||||||||||| |||||||||||||||||| ||| ||   |
Sbjct: 1290 gctgaacagtgttcaggagaagagcctccgggaccatgtcgggacggccaccgccggttg 1231

                                                                        
Query: 398  ttgttgcacagcagctgatacgaggctagccgccttttctttcgcctccagtatccgagc 457
            |||   | ||||||| | | ||||||||||| | ||||||||||||||||||||||| ||
Sbjct: 1230 ttgcgccgcagcagccgttgcgaggctagccactttttctttcgcctccagtatccgtgc 1171

                                  
Query: 458  tcccttagggtcagccagaagg 479
            |||||| |||||||||||||||
Sbjct: 1170 tcccttcgggtcagccagaagg 1149



 Score =  145 bits (73), Expect = 2e-31
 Identities = 112/123 (91%), Gaps = 4/123 (3%)
 Strand = Plus / Minus

                                                                        
Query: 149  ttgccaaagctgtcaacgaacagaacaccttctaaaacaaccgagtcaagagacttctga 208
            |||||||||||||||||||||||||||| ||||||| ||||||||||||| |   |||||
Sbjct: 1496 ttgccaaagctgtcaacgaacagaacactttctaaaccaaccgagtcaagtg---tctga 1440

                                                                        
Query: 209  acaatacatacaccaggcgagaacctaatcactacgcgaaactag-tttcagagtgttta 267
            ||||||||||||| ||||| ||||||||||||||||| ||||||| ||| ||||||||||
Sbjct: 1439 acaatacatacactaggcgggaacctaatcactacgcaaaactagttttaagagtgttta 1380

               
Query: 268  cac 270
            |||
Sbjct: 1379 cac 1377



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>emb|AL606646.3|OSJN00091 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0087O24,
             complete sequence
          Length = 146168

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 340   tgaacggtgttcaggagaagagcctccgcgacca 373
             ||||| |||||||||| ||||||||||| |||||
Sbjct: 48753 tgaaccgtgttcaggaaaagagcctccgagacca 48786



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>gb|AF383876.1|AF383876 Oryza sativa plastid division protein FtsZ mRNA, complete cds,
            nuclear gene for chloroplast protein
          Length = 1586

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 340  tgaacggtgttcaggagaagagcctccgcgacca 373
            ||||| |||||||||| ||||||||||| |||||
Sbjct: 1280 tgaaccgtgttcaggaaaagagcctccgagacca 1247



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                  
Query: 340      tgaacggtgttcaggagaagagcctccgcgacca 373
                ||||| |||||||||| ||||||||||| |||||
Sbjct: 33997857 tgaaccgtgttcaggaaaagagcctccgagacca 33997890



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>dbj|AK105869.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-A11, full
            insert sequence
          Length = 1475

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 340  tgaacggtgttcaggagaagagcctccgcgacca 373
            ||||| |||||||||| ||||||||||| |||||
Sbjct: 1301 tgaaccgtgttcaggaaaagagcctccgagacca 1268



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>dbj|AK103448.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033129H18, full
            insert sequence
          Length = 1449

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 340  tgaacggtgttcaggagaagagcctccgcgacca 373
            ||||| |||||||||| ||||||||||| |||||
Sbjct: 1270 tgaaccgtgttcaggaaaagagcctccgagacca 1237



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>dbj|AK073455.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033043N15, full
            insert sequence
          Length = 1432

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 340  tgaacggtgttcaggagaagagcctccgcgacca 373
            ||||| |||||||||| ||||||||||| |||||
Sbjct: 1296 tgaaccgtgttcaggaaaagagcctccgagacca 1263



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>dbj|AK058568.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-E05, full
           insert sequence
          Length = 567

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 340 tgaacggtgttcaggagaagagcctccgcgacca 373
           ||||| |||||||||| ||||||||||| |||||
Sbjct: 181 tgaaccgtgttcaggaaaagagcctccgagacca 148



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>emb|Z81554.1|CEF57G4 Caenorhabditis elegans Cosmid F57G4, complete sequence
          Length = 29303

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 332  gtgcctgctgaacggtgttc 351
            ||||||||||||||||||||
Sbjct: 4131 gtgcctgctgaacggtgttc 4150



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>gb|AC121929.2| Mus musculus BAC clone RP24-204J10 from 5, complete sequence
          Length = 143840

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 192   agtcaagagacttctgaaca 211
             ||||||||||||||||||||
Sbjct: 88310 agtcaagagacttctgaaca 88329



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>emb|AL596444.10| Mouse DNA sequence from clone RP23-354D12 on chromosome 11 Contains the
             gene for reversion induced LIM protein (Ril), the Slc22a4
             and Slc22a9 genes for solute carrier family 22 (organic
             cation transporter), members 4 and 9, a Sin3-associated
             polypeptide 18 (Sap18) pseudogene, a pseudogene similar to
             part of solute carrier family 22 (organic cation
             transporter), member 4 Slc22a4 and two CpG islands,
             complete sequence
          Length = 171301

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 183   aaacaaccgagtcaagagacttctgaac 210
             ||||||||||| ||||||||| ||||||
Sbjct: 77240 aaacaaccgagacaagagactgctgaac 77213



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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 371     ccatgtcgggacggccgccg 390
               ||||||||||||||||||||
Sbjct: 3882486 ccatgtcgggacggccgccg 3882467



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>ref|NM_075056.1| Caenorhabditis elegans F57G4.1 (F57G4.1) mRNA, complete cds
          Length = 2517

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 332  gtgcctgctgaacggtgttc 351
            ||||||||||||||||||||
Sbjct: 1822 gtgcctgctgaacggtgttc 1841



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 195      caagagacttctgaacaata 214
                ||||||||||||||||||||
Sbjct: 35709266 caagagacttctgaacaata 35709285



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>dbj|AP004366.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0460C04
          Length = 189043

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 195    caagagacttctgaacaata 214
              ||||||||||||||||||||
Sbjct: 112603 caagagacttctgaacaata 112622



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>gb|AC133519.3| Mus musculus BAC clone RP23-178N8 from chromosome 5, complete sequence
          Length = 219269

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 192   agtcaagagacttctgaaca 211
             ||||||||||||||||||||
Sbjct: 40536 agtcaagagacttctgaaca 40555



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>emb|AL513423.3|HS518K17 Homo sapiens chromosome 9 BAC RP11-518K17, complete sequence
          Length = 170535

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 306    agaaccacagcttcacaaggttgt 329
              |||||||||||| |||||||||||
Sbjct: 137774 agaaccacagctgcacaaggttgt 137797



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>emb|AL627328.17| Mouse DNA sequence from clone RP23-299J22 on chromosome 4, complete
              sequence
          Length = 229494

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 290    ctgccttgataaagtgagaa 309
              ||||||||||||||||||||
Sbjct: 114078 ctgccttgataaagtgagaa 114097


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,072,344
Number of Sequences: 3902068
Number of extensions: 3072344
Number of successful extensions: 82489
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82399
Number of HSP's gapped (non-prelim): 89
length of query: 479
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 457
effective length of database: 17,147,199,772
effective search space: 7836270295804
effective search space used: 7836270295804
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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