| Clone Name | rbags27j19 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009323.1| Triticum aestivum clone wlm24.pk0013.d6:fis, full insert mRNA sequence Length = 1560 Score = 167 bits (84), Expect = 4e-38 Identities = 173/202 (85%), Gaps = 8/202 (3%) Strand = Plus / Minus Query: 284 tctctactgccttgataaagtgagaaccacagcttcacaa------ggttgtttgtgcct 337 |||||||||||| || ||||||||||||||||| |||||| ||||||||| ||| Sbjct: 1348 tctctactgcctcgagaaagtgagaaccacagcctcacaatcgcaaggttgtttg--cct 1291 Query: 338 gctgaacggtgttcaggagaagagcctccgcgaccatgtcgggacggccgccggcgtcgg 397 ||||||| |||||||||||||||||||||| |||||||||||||||||| ||| || | Sbjct: 1290 gctgaacagtgttcaggagaagagcctccgggaccatgtcgggacggccaccgccggttg 1231 Query: 398 ttgttgcacagcagctgatacgaggctagccgccttttctttcgcctccagtatccgagc 457 ||| | ||||||| | | ||||||||||| | ||||||||||||||||||||||| || Sbjct: 1230 ttgcgccgcagcagccgttgcgaggctagccactttttctttcgcctccagtatccgtgc 1171 Query: 458 tcccttagggtcagccagaagg 479 |||||| ||||||||||||||| Sbjct: 1170 tcccttcgggtcagccagaagg 1149 Score = 145 bits (73), Expect = 2e-31 Identities = 112/123 (91%), Gaps = 4/123 (3%) Strand = Plus / Minus Query: 149 ttgccaaagctgtcaacgaacagaacaccttctaaaacaaccgagtcaagagacttctga 208 |||||||||||||||||||||||||||| ||||||| ||||||||||||| | ||||| Sbjct: 1496 ttgccaaagctgtcaacgaacagaacactttctaaaccaaccgagtcaagtg---tctga 1440 Query: 209 acaatacatacaccaggcgagaacctaatcactacgcgaaactag-tttcagagtgttta 267 ||||||||||||| ||||| ||||||||||||||||| ||||||| ||| |||||||||| Sbjct: 1439 acaatacatacactaggcgggaacctaatcactacgcaaaactagttttaagagtgttta 1380 Query: 268 cac 270 ||| Sbjct: 1379 cac 1377
>emb|AL606646.3|OSJN00091 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0087O24, complete sequence Length = 146168 Score = 44.1 bits (22), Expect = 0.41 Identities = 31/34 (91%) Strand = Plus / Plus Query: 340 tgaacggtgttcaggagaagagcctccgcgacca 373 ||||| |||||||||| ||||||||||| ||||| Sbjct: 48753 tgaaccgtgttcaggaaaagagcctccgagacca 48786
>gb|AF383876.1|AF383876 Oryza sativa plastid division protein FtsZ mRNA, complete cds, nuclear gene for chloroplast protein Length = 1586 Score = 44.1 bits (22), Expect = 0.41 Identities = 31/34 (91%) Strand = Plus / Minus Query: 340 tgaacggtgttcaggagaagagcctccgcgacca 373 ||||| |||||||||| ||||||||||| ||||| Sbjct: 1280 tgaaccgtgttcaggaaaagagcctccgagacca 1247
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.41 Identities = 31/34 (91%) Strand = Plus / Plus Query: 340 tgaacggtgttcaggagaagagcctccgcgacca 373 ||||| |||||||||| ||||||||||| ||||| Sbjct: 33997857 tgaaccgtgttcaggaaaagagcctccgagacca 33997890
>dbj|AK105869.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-A11, full insert sequence Length = 1475 Score = 44.1 bits (22), Expect = 0.41 Identities = 31/34 (91%) Strand = Plus / Minus Query: 340 tgaacggtgttcaggagaagagcctccgcgacca 373 ||||| |||||||||| ||||||||||| ||||| Sbjct: 1301 tgaaccgtgttcaggaaaagagcctccgagacca 1268
>dbj|AK103448.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033129H18, full insert sequence Length = 1449 Score = 44.1 bits (22), Expect = 0.41 Identities = 31/34 (91%) Strand = Plus / Minus Query: 340 tgaacggtgttcaggagaagagcctccgcgacca 373 ||||| |||||||||| ||||||||||| ||||| Sbjct: 1270 tgaaccgtgttcaggaaaagagcctccgagacca 1237
>dbj|AK073455.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033043N15, full insert sequence Length = 1432 Score = 44.1 bits (22), Expect = 0.41 Identities = 31/34 (91%) Strand = Plus / Minus Query: 340 tgaacggtgttcaggagaagagcctccgcgacca 373 ||||| |||||||||| ||||||||||| ||||| Sbjct: 1296 tgaaccgtgttcaggaaaagagcctccgagacca 1263
>dbj|AK058568.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-E05, full insert sequence Length = 567 Score = 44.1 bits (22), Expect = 0.41 Identities = 31/34 (91%) Strand = Plus / Minus Query: 340 tgaacggtgttcaggagaagagcctccgcgacca 373 ||||| |||||||||| ||||||||||| ||||| Sbjct: 181 tgaaccgtgttcaggaaaagagcctccgagacca 148
>emb|Z81554.1|CEF57G4 Caenorhabditis elegans Cosmid F57G4, complete sequence Length = 29303 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 332 gtgcctgctgaacggtgttc 351 |||||||||||||||||||| Sbjct: 4131 gtgcctgctgaacggtgttc 4150
>gb|AC121929.2| Mus musculus BAC clone RP24-204J10 from 5, complete sequence Length = 143840 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 agtcaagagacttctgaaca 211 |||||||||||||||||||| Sbjct: 88310 agtcaagagacttctgaaca 88329
>emb|AL596444.10| Mouse DNA sequence from clone RP23-354D12 on chromosome 11 Contains the gene for reversion induced LIM protein (Ril), the Slc22a4 and Slc22a9 genes for solute carrier family 22 (organic cation transporter), members 4 and 9, a Sin3-associated polypeptide 18 (Sap18) pseudogene, a pseudogene similar to part of solute carrier family 22 (organic cation transporter), member 4 Slc22a4 and two CpG islands, complete sequence Length = 171301 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 183 aaacaaccgagtcaagagacttctgaac 210 ||||||||||| ||||||||| |||||| Sbjct: 77240 aaacaaccgagacaagagactgctgaac 77213
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 371 ccatgtcgggacggccgccg 390 |||||||||||||||||||| Sbjct: 3882486 ccatgtcgggacggccgccg 3882467
>ref|NM_075056.1| Caenorhabditis elegans F57G4.1 (F57G4.1) mRNA, complete cds Length = 2517 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 332 gtgcctgctgaacggtgttc 351 |||||||||||||||||||| Sbjct: 1822 gtgcctgctgaacggtgttc 1841
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 caagagacttctgaacaata 214 |||||||||||||||||||| Sbjct: 35709266 caagagacttctgaacaata 35709285
>dbj|AP004366.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0460C04 Length = 189043 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 caagagacttctgaacaata 214 |||||||||||||||||||| Sbjct: 112603 caagagacttctgaacaata 112622
>gb|AC133519.3| Mus musculus BAC clone RP23-178N8 from chromosome 5, complete sequence Length = 219269 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 agtcaagagacttctgaaca 211 |||||||||||||||||||| Sbjct: 40536 agtcaagagacttctgaaca 40555
>emb|AL513423.3|HS518K17 Homo sapiens chromosome 9 BAC RP11-518K17, complete sequence Length = 170535 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 306 agaaccacagcttcacaaggttgt 329 |||||||||||| ||||||||||| Sbjct: 137774 agaaccacagctgcacaaggttgt 137797
>emb|AL627328.17| Mouse DNA sequence from clone RP23-299J22 on chromosome 4, complete sequence Length = 229494 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 ctgccttgataaagtgagaa 309 |||||||||||||||||||| Sbjct: 114078 ctgccttgataaagtgagaa 114097 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,072,344 Number of Sequences: 3902068 Number of extensions: 3072344 Number of successful extensions: 82489 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 82399 Number of HSP's gapped (non-prelim): 89 length of query: 479 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 457 effective length of database: 17,147,199,772 effective search space: 7836270295804 effective search space used: 7836270295804 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)