ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal1g24 |
|---|---|
| Clone Library Name | barley_pub |
>TOCC_MAIZE (Q94FY8) Probable tocopherol cyclase, chloroplast precursor| (Sucrose export defective 1) Length = 474 Score = 267 bits (682), Expect = 3e-71 Identities = 120/146 (82%), Positives = 132/146 (90%) Frame = -3 Query: 725 IGVHHEGKFYEFVPWTGTVSWDIAPWGHWRMSGENKNHLVEIEATTKEPGTALRAPTIEA 546 IG+H+EG+F+EFVPWTGTVSWDI WG W+MSGENK HLVEIEATT E GTALRAPTIEA Sbjct: 329 IGIHYEGQFFEFVPWTGTVSWDIGLWGLWKMSGENKTHLVEIEATTAESGTALRAPTIEA 388 Query: 545 GFVPACKDTCYGDLKLQMWEKKYDGSKGKMILDTTSNMAAVEVGGGPWFNGWKGTTASPE 366 G VPACKDTCYGDL+LQ+WEKKYDGSKG+MILD TSNMAA+EVGGGPWFNGWKGTT E Sbjct: 389 GLVPACKDTCYGDLRLQLWEKKYDGSKGEMILDATSNMAALEVGGGPWFNGWKGTTVVNE 448 Query: 365 LLNNIVGTQIDVESLFPIPILKPPGL 288 ++NNIVGT +DVESL PIP LKPPGL Sbjct: 449 VVNNIVGTPVDVESLLPIPFLKPPGL 474
>TOCC_ARATH (Q94FY7) Tocopherol cyclase, chloroplast precursor (Vitamin E| pathway gene 1 protein) (Sucrose export defective 1) Length = 488 Score = 200 bits (508), Expect = 4e-51 Identities = 88/146 (60%), Positives = 114/146 (78%), Gaps = 2/146 (1%) Frame = -3 Query: 719 VHHEGKFYEFVPWTGTVSWDIAPWGHWRMSGENKNHLVEIEATTKEPGTALRAPTIEAGF 540 VH++GK YEFVPW G V W+++PWG+W ++ EN+NH+VE+EA T E GT LRAPT E G Sbjct: 343 VHYDGKMYEFVPWNGVVRWEMSPWGYWYITAENENHVVELEARTNEAGTPLRAPTTEVGL 402 Query: 539 VPACKDTCYGDLKLQMWEKKYDGSKGKMILDTTSNMAAVEVGGGPWFNGWKGTTA-SPEL 363 AC+D+CYG+LKLQ+WE+ YDGSKGK+IL+T S+MAAVE+GGGPWF WKG T+ +PEL Sbjct: 403 ATACRDSCYGELKLQIWERLYDGSKGKVILETKSSMAAVEIGGGPWFGTWKGDTSNTPEL 462 Query: 362 LNNIVGTQIDVES-LFPIPILKPPGL 288 L + +D+ES L +P KPPGL Sbjct: 463 LKQALQVPLDLESALGLVPFFKPPGL 488
>FUSA_BURCE (P24126) Fusaric acid resistance protein fusA precursor| Length = 530 Score = 31.2 bits (69), Expect = 3.4 Identities = 17/47 (36%), Positives = 23/47 (48%) Frame = -3 Query: 629 GENKNHLVEIEATTKEPGTALRAPTIEAGFVPACKDTCYGDLKLQMW 489 G+NK IEA + G A+RA +AG+ A Y D +L W Sbjct: 28 GDNKPQSARIEANALDAGAAIRAADRDAGWPAADWWRAYRDPQLDTW 74
>CE110_HUMAN (O43303) Centrosomal protein of 110 kDa (Cep110 protein)| Length = 1012 Score = 30.8 bits (68), Expect = 4.5 Identities = 15/41 (36%), Positives = 19/41 (46%) Frame = +3 Query: 339 LSTNNVIQKLRRSSRAFPPVEPGTSPNFHRRHVACGVKYHL 461 ++ NNVI+ L S P EP SP HRR H+ Sbjct: 348 VTENNVIKSLTGSYAKLPSPEPSMSPKMHRRRSRTSSACHI 388
>ZFNL2_ARATH (Q9SQU4) Zinc finger CCCH type domain-containing protein ZFN-like 2| Length = 437 Score = 30.4 bits (67), Expect = 5.8 Identities = 14/35 (40%), Positives = 17/35 (48%) Frame = -2 Query: 432 GGGGSWGRSLVQRVERHDCFA*ASE*HCWYSNRCR 328 GGGG G S +R + DC C Y +RCR Sbjct: 17 GGGGGGGESYPERPDEPDCIYYLRTGVCGYGSRCR 51
>FA12_BOVIN (P98140) Coagulation factor XII precursor (EC 3.4.21.38) (Hageman| factor) (HAF) [Contains: Coagulation factor XIIa heavy chain; Coagulation factor XIIa light chain] (Fragment) Length = 593 Score = 30.4 bits (67), Expect = 5.8 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 9/61 (14%) Frame = -3 Query: 662 DIAPWGHWRMSGENKNHLVEIEATTKEP---------GTALRAPTIEAGFVPACKDTCYG 510 ++A WGH GE + L E + +P G A + AGF+ D C G Sbjct: 480 EVAGWGHQFEGGEYSSFLQEAQVPLIDPQRCSAPDVHGAAFTQGMLCAGFLEGGTDACQG 539 Query: 509 D 507 D Sbjct: 540 D 540
>Y258_HAEIN (P43974) Putative glycosyl transferase HI0258 (EC 2.-.-.-)| Length = 330 Score = 30.4 bits (67), Expect = 5.8 Identities = 14/47 (29%), Positives = 29/47 (61%) Frame = +3 Query: 228 QN*QRNLDWLQFLQFLRINLQTRGLENWNREQALDIDLSTNNVIQKL 368 QN + +D++ + R+NL T+ ++N + +D+D TN+ +Q+L Sbjct: 107 QNFPKTIDYISLATYARLNL-TKYIKNIEKAIYIDVDTLTNSSLQEL 152
>Y326_METJA (Q57772) Hypothetical protein MJ0326| Length = 436 Score = 30.0 bits (66), Expect = 7.6 Identities = 23/73 (31%), Positives = 36/73 (49%) Frame = +1 Query: 241 GT*TGFNFFSSSE*TYRPGGLRIGIGNRLSTSI*VPTMLFRSSGEAVVPFHPLNQGPPPT 420 GT G +S+ TY I +G R V MLF S + F+P+ + PP Sbjct: 293 GTVVGSLLGTSTVTTYIESASGIALGGRTGFVSVVVAMLFLLS----LFFYPVVKAIPPY 348 Query: 421 STAAMLLVVSSII 459 +TAA L++V +++ Sbjct: 349 ATAAALVIVGALM 361
>PA2_AIPLA (P08872) Phospholipase A2 precursor (EC 3.1.1.4)| (Phosphatidylcholine 2-acylhydrolase) Length = 144 Score = 30.0 bits (66), Expect = 7.6 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 6/75 (8%) Frame = -2 Query: 504 QAANVGKEIRWEQREDDT*HHKQHGGGGSWGRSLVQRVERHD-CFA*ASE*HCW-----Y 343 Q AN GK W + + GG G+ +L + + HD C+ A + C+ Y Sbjct: 37 QCANKGKRATWHYMDYGC--YCGSGGSGTPVDALDRCCKAHDDCYGVAEDNGCYPKWTLY 94 Query: 342 SNRCREPVPDSNSQA 298 S +C E VP NS++ Sbjct: 95 SWQCTENVPTCNSES 109
>FATH_HUMAN (Q14517) Cadherin-related tumor suppressor homolog precursor (Protein| fat homolog) Length = 4590 Score = 30.0 bits (66), Expect = 7.6 Identities = 14/57 (24%), Positives = 24/57 (42%) Frame = -2 Query: 354 HCWYSNRCREPVPDSNSQAPWSVGLF*GTEEIEASLGSFASFAIN*PCSSLFSQKKR 184 H + C + P+ PW++GL G + G F + C + S+KK+ Sbjct: 4157 HEYRGRHCEDAAPNQYVSTPWNIGLAEGIGIVVFVAGIFLLVVVFVLCRKMISRKKK 4213
>H6ST1_HUMAN (O60243) Heparan-sulfate 6-O-sulfotransferase 1 (EC 2.8.2.-)| (HS6ST-1) Length = 410 Score = 30.0 bits (66), Expect = 7.6 Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 5/74 (6%) Frame = -2 Query: 486 KEIRWEQREDDT*H--HKQHGGGGSWGRSLVQRVERH---DCFA*ASE*HCWYSNRCREP 322 + +R++ + DD H Q GG ++GR LVQ V DC + C+ NR RE Sbjct: 76 RSLRFDMKGDDVIVFLHIQKTGGTTFGRHLVQNVRLEVPCDCRPGQKKCTCYRPNR-RET 134 Query: 321 VPDSNSQAPWSVGL 280 S WS GL Sbjct: 135 WLFSRFSTGWSCGL 148
>DAF7_CAEEL (P92172) Dauer larva development regulatory growth factor daf-7| precursor (Abnormal dauer formation protein 7) Length = 350 Score = 30.0 bits (66), Expect = 7.6 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%) Frame = -3 Query: 629 GENKNHLVEIEATTK--EPGTALRAPTIEAGFVPACKDTCYGDLKLQMWEKKYDGSKGKM 456 GEN + LV T E L+A + +PA D+++Q++EK DGS G+M Sbjct: 100 GENPSQLVAKFDVTNDLERSDILQATLTVSIEIPAKDSGMLQDVQVQVYEKNEDGSMGEM 159 Query: 455 I 453 + Sbjct: 160 V 160
>H6ST1_CRIGR (Q91ZB4) Heparan-sulfate 6-O-sulfotransferase 1 (EC 2.8.2.-)| (HS6ST-1) (Fragment) Length = 403 Score = 30.0 bits (66), Expect = 7.6 Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 5/74 (6%) Frame = -2 Query: 486 KEIRWEQREDDT*H--HKQHGGGGSWGRSLVQRVERH---DCFA*ASE*HCWYSNRCREP 322 + +R++ + DD H Q GG ++GR LVQ V DC + C+ NR RE Sbjct: 69 RSLRFDMKGDDVIVFLHIQKTGGTTFGRHLVQNVRLEVPCDCRPGQKKCTCYRPNR-RET 127 Query: 321 VPDSNSQAPWSVGL 280 S WS GL Sbjct: 128 WLFSRFSTGWSCGL 141
>CADN2_DROME (Q9VJB6) Putative neural-cadherin 2 precursor (Cadherin-N2 protein)| (DN2-cadherin) Length = 2215 Score = 30.0 bits (66), Expect = 7.6 Identities = 39/132 (29%), Positives = 53/132 (40%), Gaps = 9/132 (6%) Frame = +3 Query: 309 WNREQALDIDLSTNNVIQKLRRSSRAF-PPVEPGTSPNFHRRHVACGVKYHLP-FAPIVF 482 W+R LDI T NV + A +E GT P F AC + +P FA + Sbjct: 1273 WHR---LDIFWDTENVRMVVDFCRTALVSEMEDGTPPEFDDN--ACQARGQIPPFAESLN 1327 Query: 483 LFPHLQLEISITGVFACWYKSSLYCWGSQSSPRFFGGCF-------YFYQMIFVFARHPP 641 L LQL G++ + +LY W S + F GC Y + F P Sbjct: 1328 LNQPLQLG----GLYRQHFDQTLYNWQYAFSSKGFDGCIRNVIHNSEHYDLAF------P 1377 Query: 642 VTPRSNVPAYCP 677 R++ PA CP Sbjct: 1378 ALARNSFPA-CP 1388
>H6ST1_MOUSE (Q9QYK5) Heparan-sulfate 6-O-sulfotransferase 1 (EC 2.8.2.-)| (HS6ST-1) (mHS6ST-1) Length = 411 Score = 30.0 bits (66), Expect = 7.6 Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 5/74 (6%) Frame = -2 Query: 486 KEIRWEQREDDT*H--HKQHGGGGSWGRSLVQRVERH---DCFA*ASE*HCWYSNRCREP 322 + +R++ + DD H Q GG ++GR LVQ V DC + C+ NR RE Sbjct: 77 RSLRFDMKGDDVIVFLHIQKTGGTTFGRHLVQNVRLEVPCDCRPGQKKCTCYRPNR-RET 135 Query: 321 VPDSNSQAPWSVGL 280 S WS GL Sbjct: 136 WLFSRFSTGWSCGL 149
>PHSA_SALTY (P37600) Thiosulfate reductase precursor (EC 1.-.-.-)| Length = 758 Score = 29.6 bits (65), Expect = 10.0 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 4/63 (6%) Frame = -3 Query: 728 KIGVHHEGKFYEFVPWTGTVSWDIAPWGHWRMSGE----NKNHLVEIEATTKEPGTALRA 561 K+ VH G ++VP + WD A W H + + E + + AT KE G AL Sbjct: 643 KVAVHTNGAT-QYVPLLSELMWDNAVWVHPQTAQEKGIKTGDEIWLENATGKEKGKALVT 701 Query: 560 PTI 552 P I Sbjct: 702 PGI 704 Score = 29.6 bits (65), Expect = 10.0 Identities = 24/79 (30%), Positives = 31/79 (39%), Gaps = 6/79 (7%) Frame = -3 Query: 632 SGENKNHLVEIEATTKEPGTALRAPTIEAGFVPACKDTCYGDLKLQMWEKKYDGS----- 468 SG +HL + P T A T AG A K GDL + + +Y S Sbjct: 148 SGSLSSHLFHLATAFGSPNTFTHASTCPAGKAIAAKVMMGGDLAMDIANTRYLVSFGHNL 207 Query: 467 -KGKMILDTTSNMAAVEVG 414 +G + DT M A E G Sbjct: 208 YEGIEVADTHELMTAQEKG 226 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 114,618,338 Number of Sequences: 219361 Number of extensions: 2576219 Number of successful extensions: 8138 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 7793 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 8136 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7536258401 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
