ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags27j08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 283 3e-73
2dbj|AP005681.3| Oryza sativa (japonica cultivar-group) genomic D... 283 3e-73
3dbj|AK105121.1| Oryza sativa (japonica cultivar-group) cDNA clon... 283 3e-73
4dbj|AK072174.1| Oryza sativa (japonica cultivar-group) cDNA clon... 283 3e-73
5dbj|AK060048.1| Oryza sativa (japonica cultivar-group) cDNA clon... 283 3e-73
6gb|AY110920.1| Zea mays CL34388_1 mRNA sequence 178 1e-41
7ref|XM_483638.1| Oryza sativa (japonica cultivar-group), mRNA 80 9e-12
8dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 80 9e-12
9dbj|AP004704.3| Oryza sativa (japonica cultivar-group) genomic D... 80 9e-12
10dbj|AP004163.3| Oryza sativa (japonica cultivar-group) genomic D... 80 9e-12
11ref|NM_100005.2| Arabidopsis thaliana unknown protein AT1G01225 ... 48 0.032
12gb|BT024776.1| Arabidopsis thaliana At1g01225 mRNA, complete cds 48 0.032
13emb|BX818287.1|CNS0AAMT Arabidopsis thaliana Full-length cDNA Co... 48 0.032
14gb|AY087072.1| Arabidopsis thaliana clone 31323 mRNA, complete s... 48 0.032
15gb|AC023628.3|AC023628 Arabidopsis thaliana chromosome I BAC F6F... 48 0.032
16gb|AC132490.2| Oryza sativa (japonica cultivar-group) chromosome... 42 2.0
17ref|NM_134290.1| Drosophila melanogaster Sox box protein 14 CG30... 42 2.0
18ref|NM_057546.2| Drosophila melanogaster Sox box protein 14 CG30... 42 2.0
19gb|AC099018.1| Drosophila melanogaster, chromosome 2R, region 60... 42 2.0
20gb|AC010947.6| Homo sapiens chromosome 18, clone RP11-25L3, comp... 42 2.0
21dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
22dbj|AK068459.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.0
23gb|AE003461.3| Drosophila melanogaster chromosome 2R, section 69... 42 2.0
24gb|AC004642.1|AC004642 Drosophila melanogaster DNA sequence (P1s... 42 2.0
25gb|AC113158.3| Mus musculus BAC clone RP23-101D11 from chromosom... 40 7.9
26gb|AC183678.2| Pan troglodytes BAC clone CH251-485O9 from chromo... 40 7.9
27gb|AY596539.1| Saccharum officinarum clone SCCCLR2C03C11, comple... 40 7.9
28gb|AC140286.3| Mus musculus BAC clone RP24-573E14 from chromosom... 40 7.9
29gb|AC113483.7| Mus musculus chromosome 1, clone RP23-343E12, com... 40 7.9
30gb|AC113977.16| Mus musculus chromosome 1, clone RP23-161E13, co... 40 7.9
31gb|AC114821.4| Mus musculus BAC clone RP23-72K1 from chromosome ... 40 7.9
32gb|AC125106.3| Mus musculus BAC clone RP24-221A9 from chromosome... 40 7.9
33gb|AC122323.3| Mus musculus BAC clone RP23-326N21 from chromosom... 40 7.9
34gb|AC122411.4| Mus musculus BAC clone RP24-143P19 from chromosom... 40 7.9
35gb|AC156549.8| Mus musculus chromosome 1, clone RP24-104O22, com... 40 7.9
36emb|BX530030.12| Zebrafish DNA sequence from clone DKEY-38K9 in ... 40 7.9
37gb|AE006024.1| Caulobacter crescentus CB15 section 350 of 359 of... 40 7.9
38gb|AF314193.1| Drosophila melanogaster Toutatis (tou) gene, comp... 40 7.9
39dbj|AK053698.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN f... 40 7.9
40gb|AC011696.4|AC011696 Drosophila melanogaster, chromosome 2R, r... 40 7.9
41gb|AC007473.10|AC007473 Drosophila melanogaster, chromosome 2R, ... 40 7.9
42gb|AC084684.1|CBRMM06C2 Caenorhabditis briggsae cosmid MM06C2, c... 40 7.9
43dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 7.9
44emb|AL928668.7| Zebrafish DNA sequence from clone CH211-208M1, c... 40 7.9
45gb|AC120412.12| Mus musculus chromosome 5, clone RP24-447P14, co... 40 7.9
46gb|AE003825.3| Drosophila melanogaster chromosome 2R, section 25... 40 7.9
47gb|AC140553.3| Mus musculus BAC clone RP24-71M17 from 1, complet... 40 7.9 
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  283 bits (143), Expect = 3e-73
 Identities = 248/283 (87%)
 Strand = Plus / Plus

                                                                            
Query: 298      gccacatcctttcttactcctatgtcggtgatgtatctaccggcacagtacatcccggct 357
                |||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct: 20305004 gccacatcctttcttactcctatgtcagtgatgtatctaccagcacagtacatcccagct 20305063

                                                                            
Query: 358      gtgacggtggccattcccagcggaccggcagcgaaaatcttgaatggggtggacagaaga 417
                ||||| ||||||||||| || ||||| ||||| |||| ||| | ||| ||||||||||||
Sbjct: 20305064 gtgacagtggccattccaagtggaccagcagcaaaaagcttaagtggagtggacagaaga 20305123

                                                                            
Query: 418      gctgccagtggcacgccaatggcggaagatgcttgcccgctcaccccaatgcctggttca 477
                ||||||| |||||| ||||||||||||||||||||||| ||    |||||||| ||||| 
Sbjct: 20305124 gctgccaatggcactccaatggcggaagatgcttgcccacttgttccaatgccaggttcc 20305183

                                                                            
Query: 478      tccacaggtacaagtccagtcttgcagtagagtgcaaagtcctcgcaattcttctcgaat 537
                || ||||| | ||| ||||| ||||||||||||||||||||||||||||| ||||| |||
Sbjct: 20305184 tcaacaggaagaagcccagttttgcagtagagtgcaaagtcctcgcaattgttctcaaat 20305243

                                                           
Query: 538      atgtcgtagttgccaaacccattttgaagcaagtgcatagctc 580
                ||||| || || ||||| ||||||||||| |||| ||| ||||
Sbjct: 20305244 atgtcataatttccaaagccattttgaagtaagtacatggctc 20305286



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 171      tcacctctcacgctttctcttca 193
                |||||||||||||||||||||||
Sbjct: 20304877 tcacctctcacgctttctcttca 20304899
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>dbj|AP005681.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1439_F07
          Length = 153743

 Score =  283 bits (143), Expect = 3e-73
 Identities = 248/283 (87%)
 Strand = Plus / Plus

                                                                         
Query: 298   gccacatcctttcttactcctatgtcggtgatgtatctaccggcacagtacatcccggct 357
             |||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct: 84131 gccacatcctttcttactcctatgtcagtgatgtatctaccagcacagtacatcccagct 84190

                                                                         
Query: 358   gtgacggtggccattcccagcggaccggcagcgaaaatcttgaatggggtggacagaaga 417
             ||||| ||||||||||| || ||||| ||||| |||| ||| | ||| ||||||||||||
Sbjct: 84191 gtgacagtggccattccaagtggaccagcagcaaaaagcttaagtggagtggacagaaga 84250

                                                                         
Query: 418   gctgccagtggcacgccaatggcggaagatgcttgcccgctcaccccaatgcctggttca 477
             ||||||| |||||| ||||||||||||||||||||||| ||    |||||||| ||||| 
Sbjct: 84251 gctgccaatggcactccaatggcggaagatgcttgcccacttgttccaatgccaggttcc 84310

                                                                         
Query: 478   tccacaggtacaagtccagtcttgcagtagagtgcaaagtcctcgcaattcttctcgaat 537
             || ||||| | ||| ||||| ||||||||||||||||||||||||||||| ||||| |||
Sbjct: 84311 tcaacaggaagaagcccagttttgcagtagagtgcaaagtcctcgcaattgttctcaaat 84370

                                                        
Query: 538   atgtcgtagttgccaaacccattttgaagcaagtgcatagctc 580
             ||||| || || ||||| ||||||||||| |||| ||| ||||
Sbjct: 84371 atgtcataatttccaaagccattttgaagtaagtacatggctc 84413



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 171   tcacctctcacgctttctcttca 193
             |||||||||||||||||||||||
Sbjct: 84004 tcacctctcacgctttctcttca 84026
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>dbj|AK105121.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-101-B12, full
           insert sequence
          Length = 1099

 Score =  283 bits (143), Expect = 3e-73
 Identities = 248/283 (87%)
 Strand = Plus / Minus

                                                                       
Query: 298 gccacatcctttcttactcctatgtcggtgatgtatctaccggcacagtacatcccggct 357
           |||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct: 762 gccacatcctttcttactcctatgtcagtgatgtatctaccagcacagtacatcccagct 703

                                                                       
Query: 358 gtgacggtggccattcccagcggaccggcagcgaaaatcttgaatggggtggacagaaga 417
           ||||| ||||||||||| || ||||| ||||| |||| ||| | ||| ||||||||||||
Sbjct: 702 gtgacagtggccattccaagtggaccagcagcaaaaagcttaagtggagtggacagaaga 643

                                                                       
Query: 418 gctgccagtggcacgccaatggcggaagatgcttgcccgctcaccccaatgcctggttca 477
           ||||||| |||||| ||||||||||||||||||||||| ||    |||||||| ||||| 
Sbjct: 642 gctgccaatggcactccaatggcggaagatgcttgcccacttgttccaatgccaggttcc 583

                                                                       
Query: 478 tccacaggtacaagtccagtcttgcagtagagtgcaaagtcctcgcaattcttctcgaat 537
           || ||||| | ||| ||||| ||||||||||||||||||||||||||||| ||||| |||
Sbjct: 582 tcaacaggaagaagcccagttttgcagtagagtgcaaagtcctcgcaattgttctcaaat 523

                                                      
Query: 538 atgtcgtagttgccaaacccattttgaagcaagtgcatagctc 580
           ||||| || || ||||| ||||||||||| |||| ||| ||||
Sbjct: 522 atgtcataatttccaaagccattttgaagtaagtacatggctc 480



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 171 tcacctctcacgctttctcttca 193
           |||||||||||||||||||||||
Sbjct: 889 tcacctctcacgctttctcttca 867
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>dbj|AK072174.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013135P13, full
            insert sequence
          Length = 3195

 Score =  283 bits (143), Expect = 3e-73
 Identities = 248/283 (87%)
 Strand = Plus / Minus

                                                                        
Query: 298  gccacatcctttcttactcctatgtcggtgatgtatctaccggcacagtacatcccggct 357
            |||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct: 2668 gccacatcctttcttactcctatgtcagtgatgtatctaccagcacagtacatcccagct 2609

                                                                        
Query: 358  gtgacggtggccattcccagcggaccggcagcgaaaatcttgaatggggtggacagaaga 417
            ||||| ||||||||||| || ||||| ||||| |||| ||| | ||| ||||||||||||
Sbjct: 2608 gtgacagtggccattccaagtggaccagcagcaaaaagcttaagtggagtggacagaaga 2549

                                                                        
Query: 418  gctgccagtggcacgccaatggcggaagatgcttgcccgctcaccccaatgcctggttca 477
            ||||||| |||||| ||||||||||||||||||||||| ||    |||||||| ||||| 
Sbjct: 2548 gctgccaatggcactccaatggcggaagatgcttgcccacttgttccaatgccaggttcc 2489

                                                                        
Query: 478  tccacaggtacaagtccagtcttgcagtagagtgcaaagtcctcgcaattcttctcgaat 537
            || ||||| | ||| ||||| ||||||||||||||||||||||||||||| ||||| |||
Sbjct: 2488 tcaacaggaagaagcccagttttgcagtagagtgcaaagtcctcgcaattgttctcaaat 2429

                                                       
Query: 538  atgtcgtagttgccaaacccattttgaagcaagtgcatagctc 580
            ||||| || || ||||| ||||||||||| |||| ||| ||||
Sbjct: 2428 atgtcataatttccaaagccattttgaagtaagtacatggctc 2386



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 171  tcacctctcacgctttctcttca 193
            |||||||||||||||||||||||
Sbjct: 2795 tcacctctcacgctttctcttca 2773
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>dbj|AK060048.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-H07, full
           insert sequence
          Length = 1044

 Score =  283 bits (143), Expect = 3e-73
 Identities = 248/283 (87%)
 Strand = Plus / Minus

                                                                       
Query: 298 gccacatcctttcttactcctatgtcggtgatgtatctaccggcacagtacatcccggct 357
           |||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct: 758 gccacatcctttcttactcctatgtcagtgatgtatctaccagcacagtacatcccagct 699

                                                                       
Query: 358 gtgacggtggccattcccagcggaccggcagcgaaaatcttgaatggggtggacagaaga 417
           ||||| ||||||||||| || ||||| ||||| |||| ||| | ||| ||||||||||||
Sbjct: 698 gtgacagtggccattccaagtggaccagcagcaaaaagcttaagtggagtggacagaaga 639

                                                                       
Query: 418 gctgccagtggcacgccaatggcggaagatgcttgcccgctcaccccaatgcctggttca 477
           ||||||| |||||| ||||||||||||||||||||||| ||    |||||||| ||||| 
Sbjct: 638 gctgccaatggcactccaatggcggaagatgcttgcccacttgttccaatgccaggttcc 579

                                                                       
Query: 478 tccacaggtacaagtccagtcttgcagtagagtgcaaagtcctcgcaattcttctcgaat 537
           || ||||| | ||| ||||| ||||||||||||||||||||||||||||| ||||| |||
Sbjct: 578 tcaacaggaagaagcccagttttgcagtagagtgcaaagtcctcgcaattgttctcaaat 519

                                                      
Query: 538 atgtcgtagttgccaaacccattttgaagcaagtgcatagctc 580
           ||||| || || ||||| ||||||||||| |||| ||| ||||
Sbjct: 518 atgtcataatttccaaagccattttgaagtaagtacatggctc 476



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 171 tcacctctcacgctttctcttca 193
           |||||||||||||||||||||||
Sbjct: 885 tcacctctcacgctttctcttca 863
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>gb|AY110920.1| Zea mays CL34388_1 mRNA sequence
          Length = 598

 Score =  178 bits (90), Expect = 1e-41
 Identities = 219/262 (83%)
 Strand = Plus / Minus

                                                                       
Query: 257 ggaaaccgaggtgcgatggcaggttttccacctccactttggccacatcctttcttactc 316
           |||||||| |||||||||  |  || ||||| || ||||| || || ||||| |||||||
Sbjct: 268 ggaaaccggggtgcgatgataatttctccacttcaacttttgctacgtccttccttactc 209

                                                                       
Query: 317 ctatgtcggtgatgtatctaccggcacagtacatcccggctgtgacggtggccattccca 376
           ||||||| || |||||||| || |||||||||||||| || ||||| ||||||||||| |
Sbjct: 208 ctatgtcagtaatgtatctgccagcacagtacatcccagccgtgacagtggccattccaa 149

                                                                       
Query: 377 gcggaccggcagcgaaaatcttgaatggggtggacagaagagctgccagtggcacgccaa 436
           ||||||| ||||| | || |||||| || |||||||||||||||||||  ||||| ||||
Sbjct: 148 gcggaccagcagccagaagcttgaacggagtggacagaagagctgccaacggcacaccaa 89

                                                                       
Query: 437 tggcggaagatgcttgcccgctcaccccaatgcctggttcatccacaggtacaagtccag 496
           | || ||||| |||||||| ||   ||||||||| || || || ||||||| ||| ||||
Sbjct: 88  tagcagaagaagcttgcccactagtcccaatgccaggctcctcaacaggtagaagcccag 29

                                 
Query: 497 tcttgcagtagagtgcaaagtc 518
           |||||||||||||||| |||||
Sbjct: 28  tcttgcagtagagtgcgaagtc 7
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>ref|XM_483638.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 909

 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 82/96 (85%)
 Strand = Plus / Minus

                                                                       
Query: 276 caggttttccacctccactttggccacatcctttcttactcctatgtcggtgatgtatct 335
           |||||| ||||||||||| ||| | || ||||| || || || |||||||||||||| ||
Sbjct: 759 caggttctccacctccaccttgacgacgtccttcctcaccccgatgtcggtgatgtacct 700

                                               
Query: 336 accggcacagtacatcccggctgtgacggtggccat 371
            ||||| |||||||||||||| ||||||| ||||||
Sbjct: 699 gccggcgcagtacatcccggcggtgacggcggccat 664



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 68/80 (85%)
 Strand = Plus / Minus

                                                                       
Query: 496 gtcttgcagtagagtgcaaagtcctcgcaattcttctcgaatatgtcgtagttgccaaac 555
           |||||||||||||| || ||||||||||| || |||||||| | ||||||| |||| |||
Sbjct: 536 gtcttgcagtagagcgcgaagtcctcgcagttgttctcgaacacgtcgtagctgccgaac 477

                               
Query: 556 ccattttgaagcaagtgcat 575
           || || || |||| ||||||
Sbjct: 476 ccgttctggagcaggtgcat 457
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 82/96 (85%)
 Strand = Plus / Plus

                                                                            
Query: 276      caggttttccacctccactttggccacatcctttcttactcctatgtcggtgatgtatct 335
                |||||| ||||||||||| ||| | || ||||| || || || |||||||||||||| ||
Sbjct: 27386430 caggttctccacctccaccttgacgacgtccttcctcaccccgatgtcggtgatgtacct 27386489

                                                    
Query: 336      accggcacagtacatcccggctgtgacggtggccat 371
                 ||||| |||||||||||||| ||||||| ||||||
Sbjct: 27386490 gccggcgcagtacatcccggcggtgacggcggccat 27386525



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 68/80 (85%)
 Strand = Plus / Plus

                                                                            
Query: 496      gtcttgcagtagagtgcaaagtcctcgcaattcttctcgaatatgtcgtagttgccaaac 555
                |||||||||||||| || ||||||||||| || |||||||| | ||||||| |||| |||
Sbjct: 27386653 gtcttgcagtagagcgcgaagtcctcgcagttgttctcgaacacgtcgtagctgccgaac 27386712

                                    
Query: 556      ccattttgaagcaagtgcat 575
                || || || |||| ||||||
Sbjct: 27386713 ccgttctggagcaggtgcat 27386732
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>dbj|AP004704.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0544G09
          Length = 137481

 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 82/96 (85%)
 Strand = Plus / Plus

                                                                         
Query: 276   caggttttccacctccactttggccacatcctttcttactcctatgtcggtgatgtatct 335
             |||||| ||||||||||| ||| | || ||||| || || || |||||||||||||| ||
Sbjct: 13225 caggttctccacctccaccttgacgacgtccttcctcaccccgatgtcggtgatgtacct 13284

                                                 
Query: 336   accggcacagtacatcccggctgtgacggtggccat 371
              ||||| |||||||||||||| ||||||| ||||||
Sbjct: 13285 gccggcgcagtacatcccggcggtgacggcggccat 13320



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 68/80 (85%)
 Strand = Plus / Plus

                                                                         
Query: 496   gtcttgcagtagagtgcaaagtcctcgcaattcttctcgaatatgtcgtagttgccaaac 555
             |||||||||||||| || ||||||||||| || |||||||| | ||||||| |||| |||
Sbjct: 13448 gtcttgcagtagagcgcgaagtcctcgcagttgttctcgaacacgtcgtagctgccgaac 13507

                                 
Query: 556   ccattttgaagcaagtgcat 575
             || || || |||| ||||||
Sbjct: 13508 ccgttctggagcaggtgcat 13527
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>dbj|AP004163.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1323_A06
          Length = 95665

 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 82/96 (85%)
 Strand = Plus / Plus

                                                                         
Query: 276   caggttttccacctccactttggccacatcctttcttactcctatgtcggtgatgtatct 335
             |||||| ||||||||||| ||| | || ||||| || || || |||||||||||||| ||
Sbjct: 87957 caggttctccacctccaccttgacgacgtccttcctcaccccgatgtcggtgatgtacct 88016

                                                 
Query: 336   accggcacagtacatcccggctgtgacggtggccat 371
              ||||| |||||||||||||| ||||||| ||||||
Sbjct: 88017 gccggcgcagtacatcccggcggtgacggcggccat 88052



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 68/80 (85%)
 Strand = Plus / Plus

                                                                         
Query: 496   gtcttgcagtagagtgcaaagtcctcgcaattcttctcgaatatgtcgtagttgccaaac 555
             |||||||||||||| || ||||||||||| || |||||||| | ||||||| |||| |||
Sbjct: 88180 gtcttgcagtagagcgcgaagtcctcgcagttgttctcgaacacgtcgtagctgccgaac 88239

                                 
Query: 556   ccattttgaagcaagtgcat 575
             || || || |||| ||||||
Sbjct: 88240 ccgttctggagcaggtgcat 88259
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>ref|NM_100005.2| Arabidopsis thaliana unknown protein AT1G01225 mRNA, complete cds
          Length = 1025

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                       
Query: 496 gtcttgcagtagagtgcaaagtcctcgcaattcttctcgaatatgtcgtagttgccaaac 555
           |||||||| ||||| || || ||||| || || |||| ||| ||||||||||||||||| 
Sbjct: 550 gtcttgcaatagagcgcgaaatcctcacagttgttcttgaaaatgtcgtagttgccaaat 491

                   
Query: 556 ccattttg 563
           || |||||
Sbjct: 490 ccgttttg 483
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>gb|BT024776.1| Arabidopsis thaliana At1g01225 mRNA, complete cds
          Length = 783

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                       
Query: 496 gtcttgcagtagagtgcaaagtcctcgcaattcttctcgaatatgtcgtagttgccaaac 555
           |||||||| ||||| || || ||||| || || |||| ||| ||||||||||||||||| 
Sbjct: 473 gtcttgcaatagagcgcgaaatcctcacagttgttcttgaaaatgtcgtagttgccaaat 414

                   
Query: 556 ccattttg 563
           || |||||
Sbjct: 413 ccgttttg 406
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>emb|BX818287.1|CNS0AAMT Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL70ZH04 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 1021

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                       
Query: 496 gtcttgcagtagagtgcaaagtcctcgcaattcttctcgaatatgtcgtagttgccaaac 555
           |||||||| ||||| || || ||||| || || |||| ||| ||||||||||||||||| 
Sbjct: 550 gtcttgcaatagagcgcgaaatcctcacagttgttcttgaaaatgtcgtagttgccaaat 491

                   
Query: 556 ccattttg 563
           || |||||
Sbjct: 490 ccgttttg 483
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>gb|AY087072.1| Arabidopsis thaliana clone 31323 mRNA, complete sequence
          Length = 982

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                       
Query: 496 gtcttgcagtagagtgcaaagtcctcgcaattcttctcgaatatgtcgtagttgccaaac 555
           |||||||| ||||| || || ||||| || || |||| ||| ||||||||||||||||| 
Sbjct: 517 gtcttgcaatagagcgcgaaatcctcacagttgttcttgaaaatgtcgtagttgccaaat 458

                   
Query: 556 ccattttg 563
           || |||||
Sbjct: 457 ccgttttg 450
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>gb|AC023628.3|AC023628 Arabidopsis thaliana chromosome I BAC F6F3 genomic sequence, complete
             sequence
          Length = 104001

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                         
Query: 496   gtcttgcagtagagtgcaaagtcctcgcaattcttctcgaatatgtcgtagttgccaaac 555
             |||||||| ||||| || || ||||| || || |||| ||| ||||||||||||||||| 
Sbjct: 37840 gtcttgcaatagagcgcgaaatcctcacagttgttcttgaaaatgtcgtagttgccaaat 37781

                     
Query: 556   ccattttg 563
             || |||||
Sbjct: 37780 ccgttttg 37773
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>gb|AC132490.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0570A02,
              complete sequence
          Length = 146541

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                   
Query: 496    gtcttgcagtagagtgcaaagtcctcgcaattcttct 532
              ||||||||||| |  ||||||||||||||||| ||||
Sbjct: 113024 gtcttgcagtatatcgcaaagtcctcgcaattgttct 113060
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>ref|NM_134290.1| Drosophila melanogaster Sox box protein 14 CG3090-RB, transcript
            variant B (Sox14), mRNA
          Length = 2485

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 189  cttcaacgggagcagcttcgt 209
            |||||||||||||||||||||
Sbjct: 2093 cttcaacgggagcagcttcgt 2113
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>ref|NM_057546.2| Drosophila melanogaster Sox box protein 14 CG3090-RA, transcript
            variant A (Sox14), mRNA
          Length = 3159

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 189  cttcaacgggagcagcttcgt 209
            |||||||||||||||||||||
Sbjct: 2767 cttcaacgggagcagcttcgt 2787
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>gb|AC099018.1| Drosophila melanogaster, chromosome 2R, region 60A-60B, BAC clone
             BACR28M05, complete sequence
          Length = 154840

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 189   cttcaacgggagcagcttcgt 209
             |||||||||||||||||||||
Sbjct: 76175 cttcaacgggagcagcttcgt 76195
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>gb|AC010947.6| Homo sapiens chromosome 18, clone RP11-25L3, complete sequence
          Length = 185470

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 405    ggtggacagaagagctgccag 425
              |||||||||||||||||||||
Sbjct: 166607 ggtggacagaagagctgccag 166587
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                     
Query: 496      gtcttgcagtagagtgcaaagtcctcgcaattcttct 532
                ||||||||||| |  ||||||||||||||||| ||||
Sbjct: 14032947 gtcttgcagtatatcgcaaagtcctcgcaattgttct 14032983
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>dbj|AK068459.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013151C17, full
            insert sequence
          Length = 3464

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                 
Query: 496  gtcttgcagtagagtgcaaagtcctcgcaattcttct 532
            ||||||||||| |  ||||||||||||||||| ||||
Sbjct: 2581 gtcttgcagtatatcgcaaagtcctcgcaattgttct 2617
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>gb|AE003461.3| Drosophila melanogaster chromosome 2R, section 69 of 73 of the complete
              sequence
          Length = 598988

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 189    cttcaacgggagcagcttcgt 209
              |||||||||||||||||||||
Sbjct: 505974 cttcaacgggagcagcttcgt 505994
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>gb|AC004642.1|AC004642 Drosophila melanogaster DNA sequence (P1s DS00543 (D193) and DS02867
              (D200)), complete sequence
          Length = 148432

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 189    cttcaacgggagcagcttcgt 209
              |||||||||||||||||||||
Sbjct: 107047 cttcaacgggagcagcttcgt 107027
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>gb|AC113158.3| Mus musculus BAC clone RP23-101D11 from chromosome 9, complete sequence
          Length = 188085

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 64    gcttataatatactgaagcataga 87
             ||||||| ||||||||||||||||
Sbjct: 10289 gcttatagtatactgaagcataga 10312
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>gb|AC183678.2| Pan troglodytes BAC clone CH251-485O9 from chromosome 22, complete
              sequence
          Length = 209755

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 478    tccacaggtacaagtccagt 497
              ||||||||||||||||||||
Sbjct: 201613 tccacaggtacaagtccagt 201594
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>gb|AY596539.1| Saccharum officinarum clone SCCCLR2C03C11, complete sequence
          Length = 1456

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 493 ccagtcttgcagtagagtgcaaagtcctcgca 524
           |||||||||||||| |  ||||||||||||||
Sbjct: 778 ccagtcttgcagtatatggcaaagtcctcgca 747
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>gb|AC140286.3| Mus musculus BAC clone RP24-573E14 from chromosome 5, complete
            sequence
          Length = 164620

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 476  catccacaggtacaagtccagtct 499
            |||||||||||||||| |||||||
Sbjct: 7689 catccacaggtacaaggccagtct 7666
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>gb|AC113483.7| Mus musculus chromosome 1, clone RP23-343E12, complete sequence
          Length = 207188

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 486   tacaagtccagtcttgcagt 505
             ||||||||||||||||||||
Sbjct: 20325 tacaagtccagtcttgcagt 20306
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>gb|AC113977.16| Mus musculus chromosome 1, clone RP23-161E13, complete sequence
          Length = 235738

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 209    tcaccttgtctgagcttctg 228
              ||||||||||||||||||||
Sbjct: 154420 tcaccttgtctgagcttctg 154401
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>gb|AC114821.4| Mus musculus BAC clone RP23-72K1 from chromosome 1, complete sequence
          Length = 197978

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 470   ctggttcatccacaggtaca 489
             ||||||||||||||||||||
Sbjct: 38101 ctggttcatccacaggtaca 38082
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>gb|AC125106.3| Mus musculus BAC clone RP24-221A9 from chromosome 9, complete sequence
          Length = 159785

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 64    gcttataatatactgaagcataga 87
             ||||||| ||||||||||||||||
Sbjct: 14345 gcttatagtatactgaagcataga 14322
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>gb|AC122323.3| Mus musculus BAC clone RP23-326N21 from chromosome 8, complete sequence
          Length = 212949

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 402   tggggtggacagaagagctg 421
             ||||||||||||||||||||
Sbjct: 94023 tggggtggacagaagagctg 94042
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>gb|AC122411.4| Mus musculus BAC clone RP24-143P19 from chromosome 1, complete
            sequence
          Length = 182658

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 209  tcaccttgtctgagcttctg 228
            ||||||||||||||||||||
Sbjct: 4796 tcaccttgtctgagcttctg 4777
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>gb|AC156549.8| Mus musculus chromosome 1, clone RP24-104O22, complete sequence
          Length = 164489

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 486   tacaagtccagtcttgcagt 505
             ||||||||||||||||||||
Sbjct: 32359 tacaagtccagtcttgcagt 32378
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>emb|BX530030.12| Zebrafish DNA sequence from clone DKEY-38K9 in linkage group 21,
             complete sequence
          Length = 180154

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 54    tatatatcaagcttataatatact 77
             ||||||| ||||||||||||||||
Sbjct: 26984 tatatattaagcttataatatact 27007
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>gb|AE006024.1| Caulobacter crescentus CB15 section 350 of 359 of the complete genome
          Length = 11264

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 118  atcgccgacgaagcgcaggg 137
            ||||||||||||||||||||
Sbjct: 4438 atcgccgacgaagcgcaggg 4457
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>gb|AF314193.1| Drosophila melanogaster Toutatis (tou) gene, complete cds
          Length = 39574

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 287  cctccactttggccacatcc 306
            ||||||||||||||||||||
Sbjct: 9699 cctccactttggccacatcc 9680
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>dbj|AK053698.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched
            library, clone:E130208O22 product:unclassifiable, full
            insert sequence
          Length = 2993

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 209  tcaccttgtctgagcttctg 228
            ||||||||||||||||||||
Sbjct: 1210 tcaccttgtctgagcttctg 1191
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>gb|AC011696.4|AC011696 Drosophila melanogaster, chromosome 2R, region 48A-48C, BAC clone
             BACR35F01, complete sequence
          Length = 170869

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 287   cctccactttggccacatcc 306
             ||||||||||||||||||||
Sbjct: 23986 cctccactttggccacatcc 24005
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>gb|AC007473.10|AC007473 Drosophila melanogaster, chromosome 2R, region 48A-48B, BAC clone
             BACR38D12, complete sequence
          Length = 171831

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 287   cctccactttggccacatcc 306
             ||||||||||||||||||||
Sbjct: 64305 cctccactttggccacatcc 64324
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>gb|AC084684.1|CBRMM06C2 Caenorhabditis briggsae cosmid MM06C2, complete sequence
          Length = 27000

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 184   tttctcttcaacgggagcagcttc 207
             |||||||||||| |||||||||||
Sbjct: 26138 tttctcttcaacaggagcagcttc 26115



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 184   tttctcttcaacgggagcagcttc 207
             |||||||||||| |||||||||||
Sbjct: 26003 tttctcttcaacaggagcagcttc 25980



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 184   tttctcttcaacgggagcagcttc 207
             |||||||||||| |||||||||||
Sbjct: 23723 tttctcttcaactggagcagcttc 23700



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 184   tttctcttcaacgggagcagcttc 207
             |||||||||||| |||||||||||
Sbjct: 23243 tttctcttcaactggagcagcttc 23220



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 184   tttctcttcaacgggagcagcttc 207
             |||||||||||| |||||||||||
Sbjct: 23018 tttctcttcaactggagcagcttc 22995



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 184   tttctcttcaacgggagcagcttc 207
             |||||||||||| |||||||||||
Sbjct: 22838 tttctcttcaactggagcagcttc 22815



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 184   tttctcttcaacgggagcagcttc 207
             |||||||||||| |||||||||||
Sbjct: 22628 tttctcttcaactggagcagcttc 22605



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 184   tttctcttcaacgggagcagcttc 207
             |||||||||||| |||||||||||
Sbjct: 22210 tttctcttcaactggagcagcttc 22187
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 358     gtgacggtggccattcccagcgga 381
               ||||| ||||||||||||||||||
Sbjct: 7729571 gtgaccgtggccattcccagcgga 7729594
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>emb|AL928668.7| Zebrafish DNA sequence from clone CH211-208M1, complete sequence
          Length = 241975

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 54     tatatatcaagcttataatatact 77
              ||||||| ||||||||||||||||
Sbjct: 186811 tatatattaagcttataatatact 186788
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>gb|AC120412.12| Mus musculus chromosome 5, clone RP24-447P14, complete sequence
          Length = 149454

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 476   catccacaggtacaagtccagtct 499
             |||||||||||||||| |||||||
Sbjct: 25679 catccacaggtacaaggccagtct 25656
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>gb|AE003825.3| Drosophila melanogaster chromosome 2R, section 25 of 73 of the complete
              sequence
          Length = 261690

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 287    cctccactttggccacatcc 306
              ||||||||||||||||||||
Sbjct: 142478 cctccactttggccacatcc 142497
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>gb|AC140553.3| Mus musculus BAC clone RP24-71M17 from 1, complete sequence
          Length = 217538

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 470    ctggttcatccacaggtaca 489
              ||||||||||||||||||||
Sbjct: 159027 ctggttcatccacaggtaca 159008


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,940,593
Number of Sequences: 3902068
Number of extensions: 3940593
Number of successful extensions: 69736
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69497
Number of HSP's gapped (non-prelim): 234
length of query: 580
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 557
effective length of database: 17,143,297,704
effective search space: 9548816821128
effective search space used: 9548816821128
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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