ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags27j05 |
|---|---|
| Clone Library Name | barley_pub |
>EF1G2_ORYSA (Q6YW46) Elongation factor 1-gamma 2 (EF-1-gamma 2) (eEF-1B gamma| 2) Length = 418 Score = 289 bits (740), Expect = 4e-78 Identities = 131/151 (86%), Positives = 145/151 (96%) Frame = -1 Query: 562 SKMVLDDWKRLYSNTKSNFHDVAVKGFWXMYDPEGYSLWFCDYKYQEENTVSYVTLNKVG 383 SKM+LD+WKRLYSNTK+NF +VA+KGFW MYDPEGYSLWFCDYKY +ENTVS+VT+NKVG Sbjct: 268 SKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTMNKVG 327 Query: 382 GFLQRMDLCRKYAFGKMLVIGSEAPFKVKGLWLFRGQDIPEFVMNEVYDMELYEWTKVDL 203 GFLQRMDLCRKYAFGKMLVIGSE PFKVKGLWLFRG +IP+FVM+EVYDMELYEWTKVD+ Sbjct: 328 GFLQRMDLCRKYAFGKMLVIGSEPPFKVKGLWLFRGPEIPKFVMDEVYDMELYEWTKVDI 387 Query: 202 SDEAQKKRVEAMIEDLEPFEGQSLLDAKCFK 110 SDEAQK+RV AMIEDLEPFEG+SLLDAKCFK Sbjct: 388 SDEAQKERVSAMIEDLEPFEGESLLDAKCFK 418
>EF1G1_ORYSA (Q9ZRI7) Elongation factor 1-gamma 1 (EF-1-gamma 1) (eEF-1B gamma| 1) Length = 418 Score = 288 bits (737), Expect = 9e-78 Identities = 130/151 (86%), Positives = 145/151 (96%) Frame = -1 Query: 562 SKMVLDDWKRLYSNTKSNFHDVAVKGFWXMYDPEGYSLWFCDYKYQEENTVSYVTLNKVG 383 SKM+LD+WKRLYSNTK+NF +VA+KGFW MYDPEGYSLWFCDYKY +ENTVS+VT+NKVG Sbjct: 268 SKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTMNKVG 327 Query: 382 GFLQRMDLCRKYAFGKMLVIGSEAPFKVKGLWLFRGQDIPEFVMNEVYDMELYEWTKVDL 203 GFLQRMDLCRKYAFGKMLVIGSE PFKVKGLWLFRG +IP+FVM+EVYDMELYEWTKVD+ Sbjct: 328 GFLQRMDLCRKYAFGKMLVIGSEPPFKVKGLWLFRGPEIPKFVMDEVYDMELYEWTKVDI 387 Query: 202 SDEAQKKRVEAMIEDLEPFEGQSLLDAKCFK 110 SDEAQK+RV AMIEDLEPFEG++LLDAKCFK Sbjct: 388 SDEAQKERVSAMIEDLEPFEGEALLDAKCFK 418
>EF1G3_ORYSA (Q5Z627) Elongation factor 1-gamma 3 (EF-1-gamma 3) (eEF-1B gamma| 3) Length = 416 Score = 287 bits (735), Expect = 2e-77 Identities = 130/151 (86%), Positives = 143/151 (94%) Frame = -1 Query: 562 SKMVLDDWKRLYSNTKSNFHDVAVKGFWXMYDPEGYSLWFCDYKYQEENTVSYVTLNKVG 383 SKM+LD+WKRLYSNTK+NF ++A+KGFW MYDPEGYSLWFCDYKY +ENTVS+VT+NKVG Sbjct: 266 SKMILDEWKRLYSNTKTNFREIAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTMNKVG 325 Query: 382 GFLQRMDLCRKYAFGKMLVIGSEAPFKVKGLWLFRGQDIPEFVMNEVYDMELYEWTKVDL 203 GFLQRMDLCRKYAFGKMLVIGS PFKVKGLWLFRGQDIP+FVM+EVYDMELYEWTKVDL Sbjct: 326 GFLQRMDLCRKYAFGKMLVIGSTPPFKVKGLWLFRGQDIPKFVMDEVYDMELYEWTKVDL 385 Query: 202 SDEAQKKRVEAMIEDLEPFEGQSLLDAKCFK 110 SDEAQK+RV AMIED EPFEG+ LLDAKCFK Sbjct: 386 SDEAQKERVNAMIEDQEPFEGEDLLDAKCFK 416
>EF1G1_ARATH (O04487) Probable elongation factor 1-gamma 1 (EF-1-gamma 1)| (eEF-1B gamma 1) Length = 414 Score = 276 bits (707), Expect = 3e-74 Identities = 125/151 (82%), Positives = 139/151 (92%) Frame = -1 Query: 562 SKMVLDDWKRLYSNTKSNFHDVAVKGFWXMYDPEGYSLWFCDYKYQEENTVSYVTLNKVG 383 S MVLDDWKRLYSNTKSNF +VA+KGFW MYDPEGYSLWFCDYKY +EN VS+VTLNKVG Sbjct: 264 SPMVLDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENMVSFVTLNKVG 323 Query: 382 GFLQRMDLCRKYAFGKMLVIGSEAPFKVKGLWLFRGQDIPEFVMNEVYDMELYEWTKVDL 203 GFLQRMDL RKY+FGKML+ GSE PFKVKGLWLFRG +IP+F+M+EVYDMELYEWTKVD+ Sbjct: 324 GFLQRMDLARKYSFGKMLICGSEGPFKVKGLWLFRGPEIPKFIMDEVYDMELYEWTKVDI 383 Query: 202 SDEAQKKRVEAMIEDLEPFEGQSLLDAKCFK 110 SDEAQK+RV MIED EPFEG++LLDAKCFK Sbjct: 384 SDEAQKERVSQMIEDAEPFEGEALLDAKCFK 414
>EF1G2_ARATH (Q9FVT2) Probable elongation factor 1-gamma 2 (EF-1-gamma 2)| (eEF-1B gamma 2) Length = 413 Score = 276 bits (707), Expect = 3e-74 Identities = 125/151 (82%), Positives = 139/151 (92%) Frame = -1 Query: 562 SKMVLDDWKRLYSNTKSNFHDVAVKGFWXMYDPEGYSLWFCDYKYQEENTVSYVTLNKVG 383 S MVLDDWKRLYSNTKSNF +VA+KGFW MYDPEGYSLWFCDYKY +EN VS+VTLNKVG Sbjct: 263 SPMVLDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENMVSFVTLNKVG 322 Query: 382 GFLQRMDLCRKYAFGKMLVIGSEAPFKVKGLWLFRGQDIPEFVMNEVYDMELYEWTKVDL 203 GFLQRMDL RKY+FGKML+ GSE PFKVKGLWLFRG +IP+F+M+EVYDMELYEWTKVD+ Sbjct: 323 GFLQRMDLARKYSFGKMLICGSEGPFKVKGLWLFRGPEIPKFIMDEVYDMELYEWTKVDI 382 Query: 202 SDEAQKKRVEAMIEDLEPFEGQSLLDAKCFK 110 SDEAQK+RV MIED EPFEG++LLDAKCFK Sbjct: 383 SDEAQKERVSQMIEDAEPFEGEALLDAKCFK 413
>EF1G_PRUAV (Q9FUM1) Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma)| Length = 422 Score = 274 bits (700), Expect = 2e-73 Identities = 126/151 (83%), Positives = 137/151 (90%) Frame = -1 Query: 562 SKMVLDDWKRLYSNTKSNFHDVAVKGFWXMYDPEGYSLWFCDYKYQEENTVSYVTLNKVG 383 S MVLDDWKRLYSNTK+NF +VA+KGFW MYDPEGYSLWFC+YKY +ENTVS+VTLNKVG Sbjct: 272 SNMVLDDWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCEYKYNDENTVSFVTLNKVG 331 Query: 382 GFLQRMDLCRKYAFGKMLVIGSEAPFKVKGLWLFRGQDIPEFVMNEVYDMELYEWTKVDL 203 GFLQRMDL RKYAFGKMLVIGSE PFKVKGLWLFRGQ+IP FVM E YDMELY WTKVDL Sbjct: 332 GFLQRMDLARKYAFGKMLVIGSEPPFKVKGLWLFRGQEIPPFVMEECYDMELYNWTKVDL 391 Query: 202 SDEAQKKRVEAMIEDLEPFEGQSLLDAKCFK 110 SDE QK+RV +IED EPFEG++LLDAKCFK Sbjct: 392 SDENQKERVNQVIEDQEPFEGEALLDAKCFK 422
>EF1G_TRYCR (P34715) Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma)| Length = 411 Score = 107 bits (266), Expect = 4e-23 Identities = 58/151 (38%), Positives = 90/151 (59%) Frame = -1 Query: 562 SKMVLDDWKRLYSNTKSNFHDVAVKGFWXMYDPEGYSLWFCDYKYQEENTVSYVTLNKVG 383 S VLD +KR YSNT + VA F+ YD GY+ ++C YKY E+N + ++T N + Sbjct: 265 SPFVLDAFKREYSNTDTR--TVAAPYFFQHYDAAGYTTFWCRYKYNEDNKMQFMTANLIR 322 Query: 382 GFLQRMDLCRKYAFGKMLVIGSEAPFKVKGLWLFRGQDIPEFVMNEVYDMELYEWTKVDL 203 G+ QRM+ RKYAFG L+IG E + LW+FRG+ +P ++ +V D EL++W +V Sbjct: 323 GWFQRMEHVRKYAFGVALIIGEERRHDIVALWVFRGRGMPA-IVEDVEDTELFDWEEV-A 380 Query: 202 SDEAQKKRVEAMIEDLEPFEGQSLLDAKCFK 110 AQ++R+ + P + +L+ + FK Sbjct: 381 DVAAQRERITDYLSWEGPTIPRPVLEGRVFK 411
>EF1G_CARAU (Q90YC0) Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma)| Length = 442 Score = 102 bits (253), Expect = 1e-21 Identities = 55/155 (35%), Positives = 90/155 (58%), Gaps = 4/155 (2%) Frame = -1 Query: 562 SKMVLDDWKRLYSNTKSNFHDVAVKGFWXMYDPEGYSLWFCDYKYQEENTVSYVTLNKVG 383 S V+D++KR YSN + VA+ FW +D EG+S+W+ +Y++ EE T+S+++ N + Sbjct: 291 SSFVMDEFKRKYSNEDTL--TVALPYFWDHFDREGFSIWYAEYRFPEELTMSFMSCNLIT 348 Query: 382 GFLQRMDLCRKYAFGKMLVIGSEAPFKVKGLWLFRGQDIPEFVMNEVY--DMELYEWTKV 209 G QR+D RK AF +++ G+ + G+W+FRGQ++ F ++E + D E Y W K+ Sbjct: 349 GMFQRLDKLRKNAFASVILFGANNDSCISGIWVFRGQEL-AFTLSEDWQIDYESYTWRKL 407 Query: 208 DLSDEAQKKRVEAMIEDLEPFE--GQSLLDAKCFK 110 D+ E K V+ F+ G+S K FK Sbjct: 408 DVDSEECKTMVKEYFAWEGEFKHVGKSFNQGKIFK 442
>EF1G_BRARE (Q6PE25) Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma)| Length = 442 Score = 100 bits (248), Expect = 5e-21 Identities = 50/144 (34%), Positives = 88/144 (61%), Gaps = 2/144 (1%) Frame = -1 Query: 562 SKMVLDDWKRLYSNTKSNFHDVAVKGFWXMYDPEGYSLWFCDYKYQEENTVSYVTLNKVG 383 S V+D++KR YSN + VA+ FW +D EG+S+W+ +Y++ EE T+++++ N + Sbjct: 291 SSFVMDEFKRKYSNEDTM--TVALPYFWDHFDREGFSIWYAEYRFPEELTMAFMSCNLIT 348 Query: 382 GFLQRMDLCRKYAFGKMLVIGSEAPFKVKGLWLFRGQDIPEFVMNEVY--DMELYEWTKV 209 G QR+D RK AF +++ G+ + G+W+FRGQD+ F +++ + D E Y W K+ Sbjct: 349 GMFQRLDKLRKNAFASVILFGANNDSCISGIWVFRGQDL-AFPLSDDWQIDYESYTWRKL 407 Query: 208 DLSDEAQKKRVEAMIEDLEPFEGQ 137 D+ E K M+++ +EG+ Sbjct: 408 DVDSEECK----TMVKEYFAWEGE 427
>EF1G2_YEAST (P36008) Elongation factor 1-gamma 2 (EF-1-gamma 2) (Translation| elongation factor 1B gamma 2) (Eukaryotic elongation factor 1Bgamma 2) (eEF1Bgamma 2) Length = 412 Score = 100 bits (248), Expect = 5e-21 Identities = 61/156 (39%), Positives = 85/156 (54%), Gaps = 5/156 (3%) Frame = -1 Query: 562 SKMVLDDWKRLYSNTKSNFHDVAVKGFWXMYDPEGYSLWFCDYKYQEENTVSYVTLNKVG 383 S VLDDWKR YSN + VA+ FW Y+PE YS+W YKY +E T+++++ N VG Sbjct: 261 STFVLDDWKRKYSNDDTR--PVALPWFWEHYNPEEYSIWKVGYKYNDELTLTFMSNNLVG 318 Query: 382 GFLQRMDLCRKYAFGKMLVIGSEAPFKVKGLWLFRGQDI-PEFVMNEVYDMELYEWTKVD 206 GF R+ KY FG ++V G + G + RGQD P F + D E YE+TK+D Sbjct: 319 GFFNRLSASTKYMFGCLVVYGENNNNGIVGAVMVRGQDFAPAF--DVAPDWESYEYTKLD 376 Query: 205 LSDEAQKKRVEAMIEDLEPF----EGQSLLDAKCFK 110 + E K+ V M +P E + ++D K K Sbjct: 377 PTKEEDKEFVNNMWAWDKPVVVNGEDKEIVDGKVLK 412
>EF1G_CAEEL (P54412) Probable elongation factor 1-gamma (EF-1-gamma) (eEF-1B| gamma) Length = 398 Score = 99.0 bits (245), Expect = 1e-20 Identities = 49/149 (32%), Positives = 83/149 (55%), Gaps = 1/149 (0%) Frame = -1 Query: 553 VLDDWKRLYSNTKSNFHDVAVKGFWXMYDPEGYSLWFCDYKYQEENTVSYVTLNKVGGFL 374 VLD++KR YSN + A+ FW +D + +S+W C+YKY E+ T+++++ N + G Sbjct: 252 VLDNFKRSYSNEDTATK--AIPHFWENFDADNWSIWKCEYKYPEDLTLAFMSCNLINGMY 309 Query: 373 QRMDLCRKYAFGKMLVIGSEAPFKVKGLWLFRGQDIP-EFVMNEVYDMELYEWTKVDLSD 197 QR++ +K AF M++ G++ + G+W+++G + E + D E Y WTK+D Sbjct: 310 QRLEKLKKNAFASMILFGTDNNSTISGIWVWKGDKLAFELSPDWQVDYESYTWTKLDAKS 369 Query: 196 EAQKKRVEAMIEDLEPFEGQSLLDAKCFK 110 +A KK V + F G+ K FK Sbjct: 370 DATKKEVNEYLMWEGDFGGKKFNQGKIFK 398
>EF1GA_XENLA (P26642) Elongation factor 1-gamma-A (EF-1-gamma-A) (eEF-1B| gamma-A) (p47) Length = 436 Score = 98.2 bits (243), Expect = 2e-20 Identities = 48/132 (36%), Positives = 79/132 (59%), Gaps = 2/132 (1%) Frame = -1 Query: 562 SKMVLDDWKRLYSNTKSNFHDVAVKGFWXMYDPEGYSLWFCDYKYQEENTVSYVTLNKVG 383 S ++D++KR YSN + VA+ FW +D EG+S+W+ +YK+ EE T ++++ N + Sbjct: 285 SSFIMDEFKRKYSNEDTL--TVALPYFWEHFDKEGWSIWYAEYKFPEELTQAFMSCNLIT 342 Query: 382 GFLQRMDLCRKYAFGKMLVIGSEAPFKVKGLWLFRGQDIPEFVMNEVY--DMELYEWTKV 209 G QR+D RK F +++ G+ + G+W+FRGQD+ F ++E + D E Y W K+ Sbjct: 343 GMFQRLDKLRKTGFASVILFGTNNNSSISGVWVFRGQDL-AFTLSEDWQIDYESYNWRKL 401 Query: 208 DLSDEAQKKRVE 173 D E K V+ Sbjct: 402 DSGSEECKTLVK 413
>EF1G1_YEAST (P29547) Elongation factor 1-gamma 1 (EF-1-gamma 1) (Translation| elongation factor 1B gamma 1) (Eukaryotic elongation factor 1Bgamma 1) (eEF1Bgamma 1) (Calcium and membrane-binding protein 1) (Calcium phospholipid-binding protein) (CPBP) Length = 415 Score = 97.4 bits (241), Expect = 3e-20 Identities = 58/156 (37%), Positives = 86/156 (55%), Gaps = 5/156 (3%) Frame = -1 Query: 562 SKMVLDDWKRLYSNTKSNFHDVAVKGFWXMYDPEGYSLWFCDYKYQEENTVSYVTLNKVG 383 S VLDDWKR YSN + VA+ FW Y+PE YSLW YKY +E T+++++ N VG Sbjct: 264 STFVLDDWKRKYSNEDTR--PVALPWFWEHYNPEEYSLWKVTYKYNDELTLTFMSNNLVG 321 Query: 382 GFLQRMDLCRKYAFGKMLVIGSEAPFKVKGLWLFRGQD-IPEFVMNEVYDMELYEWTKVD 206 GF R+ KY FG ++V G + G + RGQD +P F + D E Y++ K+D Sbjct: 322 GFFNRLSASTKYMFGCLVVYGENNNNGIVGAVMVRGQDYVPAF--DVAPDWESYDYAKLD 379 Query: 205 LSDEAQKKRVEAMIEDLEPF----EGQSLLDAKCFK 110 +++ K+ + M +P E + ++D K K Sbjct: 380 PTNDDDKEFINNMWAWDKPVSVNGEPKEIVDGKVLK 415
>EF1G_RAT (Q68FR6) Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma)| Length = 436 Score = 96.3 bits (238), Expect = 7e-20 Identities = 53/155 (34%), Positives = 87/155 (56%), Gaps = 4/155 (2%) Frame = -1 Query: 562 SKMVLDDWKRLYSNTKSNFHDVAVKGFWXMYDPEGYSLWFCDYKYQEENTVSYVTLNKVG 383 S VLD++KR YSN + VA+ FW +D +G+SLW+ +Y++ EE T ++++ N + Sbjct: 285 STFVLDEFKRKYSNEDTL--SVALPYFWEHFDKDGWSLWYAEYRFPEELTQTFMSCNLIT 342 Query: 382 GFLQRMDLCRKYAFGKMLVIGSEAPFKVKGLWLFRGQDIPEFVMNEVY--DMELYEWTKV 209 G QR+D RK AF +++ G+ + G+W+FRGQD+ F ++ + D E Y W K+ Sbjct: 343 GMFQRLDKLRKNAFASVILFGTNNSSSISGVWVFRGQDL-AFPLSPDWQVDYESYTWRKL 401 Query: 208 DLSDEAQKKRVEAMIEDLEPFE--GQSLLDAKCFK 110 D E + V F+ G+++ K FK Sbjct: 402 DPGSEETQTLVREYFSWEGAFQHVGKAVNQGKIFK 436
>EF1G_RABIT (P29694) Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma)| Length = 436 Score = 95.9 bits (237), Expect = 9e-20 Identities = 53/155 (34%), Positives = 87/155 (56%), Gaps = 4/155 (2%) Frame = -1 Query: 562 SKMVLDDWKRLYSNTKSNFHDVAVKGFWXMYDPEGYSLWFCDYKYQEENTVSYVTLNKVG 383 S VLD++KR YSN + VA+ FW +D +G+SLW+ +Y++ EE T ++++ N + Sbjct: 285 STFVLDEFKRKYSNEDTL--SVALPYFWEHFDKDGWSLWYAEYRFPEELTQTFMSCNLIT 342 Query: 382 GFLQRMDLCRKYAFGKMLVIGSEAPFKVKGLWLFRGQDIPEFVMNEVY--DMELYEWTKV 209 G QR+D RK AF +++ G+ + G+W+FRGQ++ F ++ + D E Y W K+ Sbjct: 343 GMFQRLDKLRKNAFASVILFGTNNSSSISGIWVFRGQEL-AFPLSPDWQVDYESYTWRKL 401 Query: 208 DLSDEAQKKRVEAMIEDLEPFE--GQSLLDAKCFK 110 D S E + V F+ G++ K FK Sbjct: 402 DPSSEETQTLVREYFAWEGAFQHVGKAFNQGKVFK 436
>EF1GB_XENLA (Q91375) Elongation factor 1-gamma-B (EF-1-gamma-B) (eEF-1B| gamma-B) (p47) Length = 437 Score = 95.5 bits (236), Expect = 1e-19 Identities = 49/152 (32%), Positives = 87/152 (57%), Gaps = 2/152 (1%) Frame = -1 Query: 562 SKMVLDDWKRLYSNTKSNFHDVAVKGFWXMYDPEGYSLWFCDYKYQEENTVSYVTLNKVG 383 S ++D++KR YSN + VA+ FW ++ EG+S+W+ +YK+ EE T ++++ N + Sbjct: 286 SSFIMDEFKRKYSNEDTL--TVALPYFWEHFEKEGWSIWYAEYKFPEELTQTFMSCNLIT 343 Query: 382 GFLQRMDLCRKYAFGKMLVIGSEAPFKVKGLWLFRGQDIPEFVMNEVY--DMELYEWTKV 209 G QR+D RK AF +++ G+ + G+W+FRG D+ F ++E + D E Y W K+ Sbjct: 344 GMFQRLDKLRKTAFASVILFGTNNNSTISGVWVFRGHDL-AFTLSEDWQIDYESYTWRKL 402 Query: 208 DLSDEAQKKRVEAMIEDLEPFEGQSLLDAKCF 113 E+ + M+++ +EG+ K F Sbjct: 403 ----ESDSEECRTMVKEYFAWEGEFKHVGKAF 430
>EF1G_MOUSE (Q9D8N0) Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma)| Length = 436 Score = 94.7 bits (234), Expect = 2e-19 Identities = 52/155 (33%), Positives = 87/155 (56%), Gaps = 4/155 (2%) Frame = -1 Query: 562 SKMVLDDWKRLYSNTKSNFHDVAVKGFWXMYDPEGYSLWFCDYKYQEENTVSYVTLNKVG 383 S VLD++KR YSN + VA+ FW +D +G+SLW+ +Y++ EE T ++++ N + Sbjct: 285 STFVLDEFKRKYSNEDTL--SVALPYFWEHFDKDGWSLWYAEYRFPEELTQTFMSCNLIT 342 Query: 382 GFLQRMDLCRKYAFGKMLVIGSEAPFKVKGLWLFRGQDIPEFVMNEVY--DMELYEWTKV 209 G QR+D RK AF +++ G+ + G+W+FRGQ++ F ++ + D E Y W K+ Sbjct: 343 GMFQRLDKLRKNAFASVILFGTNNSSSISGVWVFRGQEL-AFPLSPDWQVDYESYTWRKL 401 Query: 208 DLSDEAQKKRVEAMIEDLEPFE--GQSLLDAKCFK 110 D E + V F+ G+++ K FK Sbjct: 402 DPGSEETQTLVREYFSWEGTFQHVGKAVNQGKIFK 436
>EF1G_HUMAN (P26641) Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma)| Length = 436 Score = 94.0 bits (232), Expect = 3e-19 Identities = 52/155 (33%), Positives = 86/155 (55%), Gaps = 4/155 (2%) Frame = -1 Query: 562 SKMVLDDWKRLYSNTKSNFHDVAVKGFWXMYDPEGYSLWFCDYKYQEENTVSYVTLNKVG 383 S VLD++KR YSN + VA+ FW +D +G+SLW+ +Y++ EE T ++++ N + Sbjct: 285 STFVLDEFKRKYSNEDTL--SVALPYFWEHFDKDGWSLWYSEYRFPEELTQTFMSCNLIT 342 Query: 382 GFLQRMDLCRKYAFGKMLVIGSEAPFKVKGLWLFRGQDIPEFVMNEVY--DMELYEWTKV 209 G QR+D RK AF +++ G+ + G+W+FRGQ++ F ++ + D E Y W K+ Sbjct: 343 GMFQRLDKLRKNAFASVILFGTNNSSSISGVWVFRGQEL-AFPLSPDWQVDYESYTWRKL 401 Query: 208 DLSDEAQKKRVEAMIEDLEPFE--GQSLLDAKCFK 110 D E + V F+ G++ K FK Sbjct: 402 DPGSEETQTLVREYFSWEGAFQHVGKAFNQGKIFK 436
>EF1G_PIG (Q29387) Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma)| (Fragment) Length = 432 Score = 93.6 bits (231), Expect = 4e-19 Identities = 52/155 (33%), Positives = 85/155 (54%), Gaps = 4/155 (2%) Frame = -1 Query: 562 SKMVLDDWKRLYSNTKSNFHDVAVKGFWXMYDPEGYSLWFCDYKYQEENTVSYVTLNKVG 383 S VLD++KR YSN + VA+ FW +D +G+SLW+ +Y++ EE T ++++ N + Sbjct: 281 STFVLDEFKRKYSNEDTL--SVALPYFWEHFDKDGWSLWYSEYRFPEELTQTFMSCNLIT 338 Query: 382 GFLQRMDLCRKYAFGKMLVIGSEAPFKVKGLWLFRGQDIPEFVMNEVY--DMELYEWTKV 209 G QR+D RK AF +++ G+ + G+W+FRGQ++ F ++ + D E Y W K+ Sbjct: 339 GMFQRLDKLRKNAFASVILFGTNNSSSISGVWVFRGQEL-AFPLSPDWQVDYESYTWRKL 397 Query: 208 DLSDEAQKKRVEAMI--EDLEPFEGQSLLDAKCFK 110 D E + V E G++ K FK Sbjct: 398 DPGSEETQTLVREYFSWEGAYQHVGKAFNQGKIFK 432
>EF1G_ARTSA (P12261) Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma)| Length = 429 Score = 93.2 bits (230), Expect = 6e-19 Identities = 45/126 (35%), Positives = 71/126 (56%), Gaps = 1/126 (0%) Frame = -1 Query: 550 LDDWKRLYSNTKSNFHDVAVKGFWXMYDPEGYSLWFCDYKYQEENTVSYVTLNKVGGFLQ 371 +DD+KR YSN N ++ FW +D E YS+W+ +YKYQ+E Y++ N + G Q Sbjct: 284 MDDFKRFYSN---NEETKSIPYFWEKFDKENYSIWYSEYKYQDELAKVYMSCNLITGMFQ 340 Query: 370 RMDLCRKYAFGKMLVIGSEAPFKVKGLWLFRGQDIP-EFVMNEVYDMELYEWTKVDLSDE 194 R++ RK AF + V G + + G+W++RGQD+ + + D E Y+W K+D + Sbjct: 341 RIEKMRKQAFASVCVFGEDNDSSISGIWVWRGQDLAFKLSPDWQIDYESYDWKKLDPDAQ 400 Query: 193 AQKKRV 176 K V Sbjct: 401 ETKDLV 406
>EF1G_DROME (Q9NJH0) Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma)| Length = 431 Score = 92.4 bits (228), Expect = 1e-18 Identities = 46/126 (36%), Positives = 74/126 (58%), Gaps = 2/126 (1%) Frame = -1 Query: 547 DDWKRLYSNTKSNFHDVAVKGFWXMYDPEGYSLWFCDYKYQEENTVSYVTLNKVGGFLQR 368 DD+KR+YSN ++ F+ +D E YS+WF +YKY EE + +++ N + G QR Sbjct: 287 DDFKRVYSNEDEA---KSIPYFFDKFDAENYSIWFGEYKYNEELSKVFMSCNLITGMFQR 343 Query: 367 MDLCRKYAFGKMLVIGSEAPFKVKGLWLFRGQDIPEFVMNEVY--DMELYEWTKVDLSDE 194 +D RK AF + + G + + G+W++RGQD+ F ++ + D E+Y+W K+D E Sbjct: 344 LDKMRKAAFASVCLFGEDGNSTISGIWVWRGQDL-AFTLSPDWQIDYEVYDWKKLDAKSE 402 Query: 193 AQKKRV 176 KK V Sbjct: 403 ETKKLV 408
>EF1G_SCHPO (P40921) Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma)| Length = 409 Score = 86.3 bits (212), Expect = 7e-17 Identities = 50/149 (33%), Positives = 81/149 (54%), Gaps = 2/149 (1%) Frame = -1 Query: 550 LDDWKRLYSNTKSNFHDVAVKGFWXMYDPEGYSLWFCDYKYQEE-NTVSYVTLNKVGGFL 374 ++++KR+YSN + A+ F+ +DPE YS+W DY Y E+ ++T N +GGF Sbjct: 265 IEEYKRVYSNQDTR--SGALPWFFEHFDPENYSVWKVDYSYPEDLKQPVFMTNNLIGGFF 322 Query: 373 QRMDLCRKYAFGKMLVIGSEAPFKVKGLWLFRGQD-IPEFVMNEVYDMELYEWTKVDLSD 197 QR++ RKY FG +VIG + G ++ +G D +P F + D Y +TK+D++ Sbjct: 323 QRLEASRKYIFGCCVVIGENGDNTITGAFVIKGHDYVPAF--DVAPDWGSYTFTKLDINK 380 Query: 196 EAQKKRVEAMIEDLEPFEGQSLLDAKCFK 110 K +E +P EG+ + D K K Sbjct: 381 PEDKAFIEDAWAWDKPIEGREVADGKVCK 409
>RPOA2_PYRHO (O93777) DNA-directed RNA polymerase subunit A'' (EC 2.7.7.6)| Length = 397 Score = 31.2 bits (69), Expect = 2.6 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 8/55 (14%) Frame = -1 Query: 301 VKGLWLFRGQDIPEFVMNEVYDM-----ELYEWTKVDLS---DEAQKKRVEAMIE 161 +K L +G+D+PE V E+Y+ E Y+ TKV++ DE K+ +A+IE Sbjct: 7 IKSLIEKKGKDLPESVKQELYEKLIKYNEKYKLTKVEVETIIDEVIKEYEKALIE 61
>Y115_ADE02 (P03290) Hypothetical protein E-115| Length = 115 Score = 31.2 bits (69), Expect = 2.6 Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 3/79 (3%) Frame = +1 Query: 91 PGSAPLT*STWRPARTAPRTAQGPRSWPQHASSGPHRRG---QPWSTHRAPCHRPRS*QT 261 P S PL T A PR + PR+ P RRG PWS P R ++ + Sbjct: 41 PSSTPLKVCTAPRAAPPPRASCAPRATP--------RRGWTMTPWSNATWPTRRAKT-GS 91 Query: 262 QGCPAHGRATVP*P*RAPQ 318 PA ++ P P R+P+ Sbjct: 92 ASAPAGPASSAPWPARSPE 110
>SSB_SHEHA (P77953) Single-stranded DNA-binding protein (SSB)| (Helix-destabilizing protein) Length = 226 Score = 30.8 bits (68), Expect = 3.4 Identities = 21/73 (28%), Positives = 31/73 (42%) Frame = +1 Query: 127 PARTAPRTAQGPRSWPQHASSGPHRRGQPWSTHRAPCHRPRS*QTQGCPAHGRATVP*P* 306 P + AP+ P+ PQ A P +P S + P + Q+QG A P P Sbjct: 135 PQQQAPQQGYAPK--PQSAPQQPAYAPKPQSAPQQPAQQQGGYQSQGQQPQAPAYAPKPQ 192 Query: 307 RAPQNQSRASCQK 345 APQ + + Q+ Sbjct: 193 AAPQQRPAPAPQQ 205
>APTX_DROME (Q8MSG8) Protein aprataxin-like| Length = 662 Score = 30.0 bits (66), Expect = 5.8 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = +1 Query: 127 PARTAPRTAQGPRSWPQHASSGPHRRGQPWSTHRAPCHRPRS 252 P R P + + P H SGP PW+ R PCH+ ++ Sbjct: 500 PFRNTPHLNRQSQK-PPHPRSGPRGPMAPWTGPRFPCHQQQN 540
>YOT5_CAEEL (P34651) Hypothetical protein ZK632.5| Length = 824 Score = 29.6 bits (65), Expect = 7.6 Identities = 15/40 (37%), Positives = 23/40 (57%) Frame = +2 Query: 236 VIDLVHDKLRDVLPTEEPQSLDLEGRLRTNHEHLAKSIFA 355 V+ ++H L +VL T ++L E RLR H+ +IFA Sbjct: 640 VLRMLHTALNEVLETRNSETLTREPRLRYAFFHMNTTIFA 679
>P320_TRYBB (P21787) Microtubule-associated protein P320 (Fragment)| Length = 290 Score = 29.6 bits (65), Expect = 7.6 Identities = 14/54 (25%), Positives = 24/54 (44%) Frame = +2 Query: 227 ELHVIDLVHDKLRDVLPTEEPQSLDLEGRLRTNHEHLAKSIFAAQIHPLQEPAD 388 E H + H+ + + P+E Q + + TN H+ +S F H +P D Sbjct: 136 ESHFLTTTHEAYKPIDPSEYRQKRTVGEEVTTNMRHVDESHFLTTTHEAYKPID 189
>AGRP_MOUSE (P56473) Agouti-related protein precursor| Length = 131 Score = 29.3 bits (64), Expect = 10.0 Identities = 14/43 (32%), Positives = 23/43 (53%) Frame = -1 Query: 217 TKVDLSDEAQKKRVEAMIEDLEPFEGQSLLDAKCFK*AEHCLG 89 T D ++E ++ EA+ E L+P +S +C + E CLG Sbjct: 53 TTADRAEEVLLQKAEALAEVLDPQNRESRSPRRCVRLHESCLG 95
>RPOA2_PYRAB (Q9V113) DNA-directed RNA polymerase subunit A'' (EC 2.7.7.6)| Length = 397 Score = 29.3 bits (64), Expect = 10.0 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 8/55 (14%) Frame = -1 Query: 301 VKGLWLFRGQDIPEFVMNEVYDM-----ELYEWTKVDLS---DEAQKKRVEAMIE 161 +K L +G+D+PE V E+Y+ E Y+ TK ++ DE K+ A++E Sbjct: 7 IKSLIEKKGKDLPESVKQELYEKLIKYNEKYKLTKAEVETIIDEVVKEYERALVE 61
>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1| (Ser/Arg-related nuclear matrix protein) (SR-related nuclear matrix protein of 160 kDa) (SRm160) Length = 904 Score = 29.3 bits (64), Expect = 10.0 Identities = 30/104 (28%), Positives = 44/104 (42%), Gaps = 2/104 (1%) Frame = +1 Query: 127 PARTAPRTAQGPRSWPQHASSGPHRRGQPWSTHRAPCHRP--RS*QTQGCPAHGRATVP* 300 P AP+T+ P + ASS P RR P +P RP R +T +A P Sbjct: 686 PRPRAPQTSSSPPPVRRGASSSPQRRQSP-----SPSTRPIRRVSRTPEPKKIKKAASP- 739 Query: 301 P*RAPQNQSRASCQKHICGTDPSAAGTRRPCSG*RRTQCSLPGT 432 +PQ+ R S + + G+ AA ++P + Q P T Sbjct: 740 ---SPQSVRRVSSSRSVSGSPEPAA--KKPPAPPSPVQSQSPST 778
>XRCC4_MOUSE (Q924T3) DNA-repair protein XRCC4 (X-ray repair cross-complementing| protein 4) Length = 326 Score = 29.3 bits (64), Expect = 10.0 Identities = 18/59 (30%), Positives = 26/59 (44%) Frame = +1 Query: 310 APQNQSRASCQKHICGTDPSAAGTRRPCSG*RRTQCSLPGTCSHRTTESNPLGHTSXRN 486 AP + R QK++ GT+P A P R SLP T +T + + + RN Sbjct: 261 APSRKRRHRMQKNL-GTEPKMAPQELPLQEKERLASSLPQTLKEESTSAENMSLETLRN 318
>AROC_STRT2 (Q5M555) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 388 Score = 29.3 bits (64), Expect = 10.0 Identities = 22/62 (35%), Positives = 28/62 (45%) Frame = +2 Query: 215 GPLIELHVIDLVHDKLRDVLPTEEPQSLDLEGRLRTNHEHLAKSIFAAQIHPLQEPADLV 394 G I LHVI+ H K D++ E D+E RL+T + HP ADLV Sbjct: 69 GAPITLHVINKDHQKWLDIMAVE-----DIEDRLKTKRK---------ITHPRPGHADLV 114 Query: 395 QG 400 G Sbjct: 115 GG 116
>AROC_STRT1 (Q5M0L9) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 388 Score = 29.3 bits (64), Expect = 10.0 Identities = 22/62 (35%), Positives = 28/62 (45%) Frame = +2 Query: 215 GPLIELHVIDLVHDKLRDVLPTEEPQSLDLEGRLRTNHEHLAKSIFAAQIHPLQEPADLV 394 G I LHVI+ H K D++ E D+E RL+T + HP ADLV Sbjct: 69 GAPITLHVINKDHQKWLDIMAVE-----DIEDRLKTKRK---------ITHPRPGHADLV 114 Query: 395 QG 400 G Sbjct: 115 GG 116 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 87,364,103 Number of Sequences: 219361 Number of extensions: 1822907 Number of successful extensions: 5618 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 5376 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5592 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5767334219 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
