ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags27h15 |
|---|---|
| Clone Library Name | barley_pub |
>SMC2_CHICK (Q90988) Structural maintenance of chromosome 2 (Chromosome scaffold| protein ScII) Length = 1189 Score = 30.0 bits (66), Expect = 1.4 Identities = 24/79 (30%), Positives = 37/79 (46%) Frame = +3 Query: 96 FLPIPLLWDRQVHQTQTDINLSH*QNLLKALLAFLYQSTRVINSLFKPLFNNGSHLQMPP 275 F P P+ + + ++LSH QN+ + L A QS ++ SL +FNN + L Sbjct: 1104 FKPAPIYI---LDEVDAALDLSHTQNIGQMLHAHFKQSQFLVVSLKDGMFNNANVLYRTK 1160 Query: 276 KN*DISTKQHHNFKQQMQP 332 IST H ++ QP Sbjct: 1161 FVDGISTVSRHCQLKKKQP 1179
>PALH_BOTCI (Q5V9L7) pH-response regulator protein palH/RIM21| Length = 742 Score = 30.0 bits (66), Expect = 1.4 Identities = 18/61 (29%), Positives = 28/61 (45%) Frame = +1 Query: 184 PFLPFFINQHASLTHYSNLSSTTAHIFRCHQRIRTFRPSNTTTSSNKCNPLLCCEATPIR 363 P+ P +NQH S+TH ++S TA QR+ S T S + ++PI Sbjct: 651 PYTPDSLNQH-SITHRGSISFATAVQPELDQRVENATASPTLVGSRQTPTFSSSRSSPIT 709 Query: 364 I 366 + Sbjct: 710 V 710
>LCMT2_CANAL (Q5A931) Leucine carboxyl methyltransferase 2 (EC 2.1.1.-)| Length = 689 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/47 (29%), Positives = 22/47 (46%) Frame = +2 Query: 194 LSLSINTRH*LIIQTSLQQRLTSSDATKELGHFDQATPQLQATNATP 334 +S +N H LI++ + T++ ATK L HF +Q P Sbjct: 232 ISSQVNNSHFLILEQIMPDGATNAFATKMLYHFQHLRSPIQCVETYP 278
>TLE3_HUMAN (Q04726) Transducin-like enhancer protein 3 (ESG3)| Length = 772 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%) Frame = +2 Query: 257 TSSDATKELGHFDQ-ATPQLQATNATPCSAAKRP 355 T S TK+LGH D+ +TP L++ TP + A P Sbjct: 296 TPSSKTKDLGHNDKSSTPGLKSNTPTPRNDAPTP 329
>TLE3_MOUSE (Q08122) Transducin-like enhancer protein 3 (ESG) (Grg-3)| Length = 771 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%) Frame = +2 Query: 257 TSSDATKELGHFDQ-ATPQLQATNATPCSAAKRP 355 T S TK+LGH D+ +TP L++ TP + A P Sbjct: 295 TPSSKTKDLGHNDKSSTPGLKSNTPTPRNDAPTP 328
>TLE3_RAT (Q9JIT3) Transducin-like enhancer protein 3 (rTLE3)| Length = 764 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%) Frame = +2 Query: 257 TSSDATKELGHFDQ-ATPQLQATNATPCSAAKRP 355 T S TK+LGH D+ +TP L++ TP + A P Sbjct: 296 TPSSKTKDLGHNDKSSTPGLKSNTPTPRNDAPTP 329
>MUTL_LACPL (Q88UZ8) DNA mismatch repair protein mutL| Length = 678 Score = 28.1 bits (61), Expect = 5.3 Identities = 17/51 (33%), Positives = 24/51 (47%) Frame = +3 Query: 108 PLLWDRQVHQTQTDINLSH*QNLLKALLAFLYQSTRVINSLFKPLFNNGSH 260 PLL D VH T+ ++ LS L K + + +N + L N GSH Sbjct: 290 PLLVDVNVHPTKQEVRLSKEPELAKLVSTTITDRLVDVNLIPSALTNLGSH 340
>MPPA_NEUCR (P23955) Mitochondrial-processing peptidase alpha subunit,| mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP) Length = 577 Score = 28.1 bits (61), Expect = 5.3 Identities = 12/36 (33%), Positives = 18/36 (50%) Frame = +1 Query: 280 IRTFRPSNTTTSSNKCNPLLCCEATPIRITTARAEA 387 + FRP+ S++C PL A P+ + AR A Sbjct: 2 LNRFRPARLVAQSSRCLPLTRARAGPLPVNNARTLA 37
>TEBA_OXYNO (P29549) Telomere-binding protein alpha subunit (Telomere-binding| protein 56 kDa subunit) (TEBP alpha) Length = 495 Score = 28.1 bits (61), Expect = 5.3 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 2/66 (3%) Frame = +2 Query: 143 DRHKLE--SLTKSTKSPSCLSLSINTRH*LIIQTSLQQRLTSSDATKELGHFDQATPQLQ 316 D H +E SL K+ + + ++ +H + TSLQ +D+ KEL D Q Sbjct: 315 DDHSVEVASLKKNVSLNAVVLTEVDKKHAALPSTSLQDLFHHADSDKELQAQDTFRTQFY 374 Query: 317 ATNATP 334 T P Sbjct: 375 VTKIEP 380
>RNS1B_RATTI (Q8VD84) Ribonuclease pancreatic beta-type precursor (EC 3.1.27.5)| (RNase 1 gamma) Length = 152 Score = 28.1 bits (61), Expect = 5.3 Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%) Frame = +1 Query: 241 SSTTAHIFRCHQRIRTFRPS-NTTTSSNKCNPLLCCEATPI 360 SS+T HI CH + + P+ + TT+ ++ + ++ CE P+ Sbjct: 103 SSSTLHITECHLKGSSKYPNCDYTTTDSQKHIIIACEGNPL 143
>A4_SAISC (Q95241) Amyloid beta A4 protein precursor (APP) (ABPP) (Alzheimer| disease amyloid protein homolog) [Contains: Soluble APP-alpha (S-APP-alpha); Soluble APP-beta (S-APP-beta); C99; Beta-amyloid protein 42 (Beta-APP42); Beta-amyloid protein 40 (Be Length = 751 Score = 27.7 bits (60), Expect = 7.0 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 3/35 (8%) Frame = +1 Query: 37 KSHPHSYTPKDTNCSNKATSSYQYHF---CGIDRY 132 ++H H +T CS K+T+ + Y CGID++ Sbjct: 145 ETHLHWHTVAKETCSEKSTNLHDYGMLLPCGIDKF 179
>MID2_YEAST (P36027) Mating process protein MID2 (Serine-rich protein SMS1)| (Protein kinase A interference protein) Length = 376 Score = 27.7 bits (60), Expect = 7.0 Identities = 27/114 (23%), Positives = 51/114 (44%), Gaps = 4/114 (3%) Frame = +2 Query: 17 SSSAKLTNLTHIPTLQKIQTAATKPLVLTNTTFVG*TGTSDSDRHKLESLTKSTKSPSCL 196 SSSA ++LT + + + + + + + +F + +SDS S + + S S Sbjct: 63 SSSADSSSLTSSTSSRSLVSHTSSSTSIASISFTSFSFSSDSSTSSSSSASSDSSSSSSF 122 Query: 197 SLSINTRH*LIIQTSLQQRLTSSDATKELGHFDQATP----QLQATNATPCSAA 346 S+S +T TS Q TSS ++ ++P +T++TP + A Sbjct: 123 SIS-STSATSESSTSSTQTSTSSSSSLSSTPSSSSSPSTITSAPSTSSTPSTTA 175
>OR24A_DROME (P81913) Putative odorant receptor 24a| Length = 387 Score = 27.7 bits (60), Expect = 7.0 Identities = 10/32 (31%), Positives = 18/32 (56%) Frame = -2 Query: 132 VPVYPTKVVLVRTSGFVAAVCIFWSVGMWVRF 37 +P+YP +LV G++ VC + G ++ F Sbjct: 171 LPLYPITYILVHWHGYITVVCFVGADGFFLGF 202
>A4_RAT (P08592) Amyloid beta A4 protein precursor (APP) (ABPP) (Alzheimer| disease amyloid protein homolog) (Amyloidogenic glycoprotein) (AG) [Contains: Soluble APP-alpha (S-APP-alpha); Soluble APP-beta (S-APP-beta); C99; Beta-amyloid protein 42 (Beta-APP Length = 770 Score = 27.7 bits (60), Expect = 7.0 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 3/35 (8%) Frame = +1 Query: 37 KSHPHSYTPKDTNCSNKATSSYQYHF---CGIDRY 132 ++H H +T CS K+T+ + Y CGID++ Sbjct: 145 ETHLHWHTVAKETCSEKSTNLHDYGMLLPCGIDKF 179
>A4_PIG (P79307) Amyloid beta A4 protein precursor (APP) (ABPP) (Alzheimer| disease amyloid protein homolog) [Contains: Soluble APP-alpha (S-APP-alpha); Soluble APP-beta (S-APP-beta); C99; Beta-amyloid protein 42 (Beta-APP42); Beta-amyloid protein 40 (Beta Length = 770 Score = 27.7 bits (60), Expect = 7.0 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 3/35 (8%) Frame = +1 Query: 37 KSHPHSYTPKDTNCSNKATSSYQYHF---CGIDRY 132 ++H H +T CS K+T+ + Y CGID++ Sbjct: 145 ETHLHWHTVAKETCSEKSTNLHDYGMLLPCGIDKF 179
>A4_PANTR (Q5IS80) Amyloid beta A4 protein precursor (APP) (ABPP) (Alzheimer| disease amyloid protein homolog) [Contains: Soluble APP-alpha (S-APP-alpha); Soluble APP-beta (S-APP-beta); C99; Beta-amyloid protein 42 (Beta-APP42); Beta-amyloid protein 40 (Be Length = 770 Score = 27.7 bits (60), Expect = 7.0 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 3/35 (8%) Frame = +1 Query: 37 KSHPHSYTPKDTNCSNKATSSYQYHF---CGIDRY 132 ++H H +T CS K+T+ + Y CGID++ Sbjct: 145 ETHLHWHTVAKETCSEKSTNLHDYGMLLPCGIDKF 179
>A4_MOUSE (P12023) Amyloid beta A4 protein precursor (APP) (ABPP) (Alzheimer| disease amyloid protein homolog) (Amyloidogenic glycoprotein) (AG) [Contains: Soluble APP-alpha (S-APP-alpha); Soluble APP-beta (S-APP-beta); C99 (APP-C99); Beta-amyloid protein Length = 770 Score = 27.7 bits (60), Expect = 7.0 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 3/35 (8%) Frame = +1 Query: 37 KSHPHSYTPKDTNCSNKATSSYQYHF---CGIDRY 132 ++H H +T CS K+T+ + Y CGID++ Sbjct: 145 ETHLHWHTVAKETCSEKSTNLHDYGMLLPCGIDKF 179
>A4_MACFA (P53601) Amyloid beta A4 protein precursor (APP) (ABPP) (Alzheimer| disease amyloid protein homolog) [Contains: Soluble APP-alpha (S-APP-alpha); Soluble APP-beta (S-APP-beta); C99; Beta-amyloid protein 42 (Beta-APP42); Beta-amyloid protein 40 (Be Length = 770 Score = 27.7 bits (60), Expect = 7.0 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 3/35 (8%) Frame = +1 Query: 37 KSHPHSYTPKDTNCSNKATSSYQYHF---CGIDRY 132 ++H H +T CS K+T+ + Y CGID++ Sbjct: 145 ETHLHWHTVAKETCSEKSTNLHDYGMLLPCGIDKF 179
>A4_HUMAN (P05067) Amyloid beta A4 protein precursor (APP) (ABPP) (Alzheimer| disease amyloid protein) (Cerebral vascular amyloid peptide) (CVAP) (Protease nexin-II) (PN-II) (APPI) (PreA4) [Contains: Soluble APP-alpha (S-APP-alpha); Soluble APP-beta (S-APP Length = 770 Score = 27.7 bits (60), Expect = 7.0 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 3/35 (8%) Frame = +1 Query: 37 KSHPHSYTPKDTNCSNKATSSYQYHF---CGIDRY 132 ++H H +T CS K+T+ + Y CGID++ Sbjct: 145 ETHLHWHTVAKETCSEKSTNLHDYGMLLPCGIDKF 179
>A4_CAVPO (Q60495) Amyloid beta A4 protein precursor (APP) (ABPP) (Alzheimer| disease amyloid protein homolog) [Contains: Soluble APP-alpha (S-APP-alpha); Soluble APP-beta (S-APP-beta); CTF-alpha; CTF-beta; Beta-amyloid protein 42 (Beta-APP42); Beta-amyloi Length = 770 Score = 27.7 bits (60), Expect = 7.0 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 3/35 (8%) Frame = +1 Query: 37 KSHPHSYTPKDTNCSNKATSSYQYHF---CGIDRY 132 ++H H +T CS K+T+ + Y CGID++ Sbjct: 145 ETHLHWHTVAKETCSEKSTNLHDYGMLLPCGIDKF 179
>STFR_ECOLI (P76072) Side tail fiber protein homolog from lambdoid prophage Rac| Length = 1120 Score = 27.3 bits (59), Expect = 9.1 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = +1 Query: 37 KSHPHSYTPKDTNCSNKATSSYQY 108 KSH HS + T+ K TSS+ Y Sbjct: 973 KSHTHSASASSTDLGTKTTSSFDY 996
>DAN4_YEAST (P47179) Cell wall protein DAN4 precursor| Length = 1161 Score = 27.3 bits (59), Expect = 9.1 Identities = 29/118 (24%), Positives = 45/118 (38%), Gaps = 5/118 (4%) Frame = +2 Query: 5 PRAHSSSAKLTNLTHIPT-----LQKIQTAATKPLVLTNTTFVG*TGTSDSDRHKLESLT 169 P S+ +K T IPT K T+ T +T+TT + TS + S T Sbjct: 106 PAISSALSKDGIYTAIPTSTSTTTTKSSTSTTPTTTITSTT----STTSTTPTTSTTSTT 161 Query: 170 KSTKSPSCLSLSINTRH*LIIQTSLQQRLTSSDATKELGHFDQATPQLQATNATPCSA 343 +T + S + T T+ TS+ +T TP T+ TP ++ Sbjct: 162 PTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTS 219 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,651,877 Number of Sequences: 219361 Number of extensions: 918017 Number of successful extensions: 2600 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 2544 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2595 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 1386249648 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
