ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags27h15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
2dbj|AP003333.4| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
3dbj|AP003253.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
4dbj|AK109565.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
5gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 42 1.3
6emb|CR387992.11| Zebrafish DNA sequence from clone DKEY-234K24 i... 42 1.3
7emb|BX664742.15| Zebrafish DNA sequence from clone DKEY-193L3 in... 40 5.2
8emb|BX061463.1|CNS09JL7 Single read from an extremity of a full-... 40 5.2
9gb|AC154642.2| Mus musculus BAC clone RP23-277C14 from chromosom... 40 5.2
10emb|BX322655.10| Zebrafish DNA sequence from clone DKEYP-53E12 i... 40 5.2
11gb|AC023718.4| Drosophila melanogaster X BAC RP98-7P15 (Roswell ... 40 5.2
12dbj|AP007159.1| Aspergillus oryzae RIB40 genomic DNA, SC026 40 5.2
13gb|AE003486.2| Drosophila melanogaster chromosome X, section 38 ... 40 5.2
14dbj|AP000925.6| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 5.2
15gb|AC142274.3| Mus musculus BAC clone RP23-251M14 from 6, comple... 40 5.2
16dbj|AP006119.1| Lotus japonicus genomic DNA, chromosome 3, clone... 40 5.2

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                          
Query: 225      tcattattcaaacctctcttcaacaacggctcacatcttcagatgccaccaaagaatt 282
                ||||||||| || |||||||||| ||| || |||||||||||| || ||||| |||||
Sbjct: 23318789 tcattattccaagctctcttcaagaaccgcccacatcttcagacgcaaccaacgaatt 23318732



 Score = 46.1 bits (23), Expect = 0.084
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                               
Query: 66       agatacaaactgcagcaacaaagccactagttcttaccaataccact 112
                |||||||||||||||| | ||||||||| || || || |||||||||
Sbjct: 23318924 agatacaaactgcagctataaagccacttgtgctaacaaataccact 23318878



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>dbj|AP003333.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1103C09
          Length = 163996

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                       
Query: 225   tcattattcaaacctctcttcaacaacggctcacatcttcagatgccaccaaagaatt 282
             ||||||||| || |||||||||| ||| || |||||||||||| || ||||| |||||
Sbjct: 44487 tcattattccaagctctcttcaagaaccgcccacatcttcagacgcaaccaacgaatt 44430



 Score = 46.1 bits (23), Expect = 0.084
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                            
Query: 66    agatacaaactgcagcaacaaagccactagttcttaccaataccact 112
             |||||||||||||||| | ||||||||| || || || |||||||||
Sbjct: 44622 agatacaaactgcagctataaagccacttgtgctaacaaataccact 44576



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>dbj|AP003253.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0451D05
          Length = 148381

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                        
Query: 225    tcattattcaaacctctcttcaacaacggctcacatcttcagatgccaccaaagaatt 282
              ||||||||| || |||||||||| ||| || |||||||||||| || ||||| |||||
Sbjct: 105531 tcattattccaagctctcttcaagaaccgcccacatcttcagacgcaaccaacgaatt 105474



 Score = 46.1 bits (23), Expect = 0.084
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                             
Query: 66     agatacaaactgcagcaacaaagccactagttcttaccaataccact 112
              |||||||||||||||| | ||||||||| || || || |||||||||
Sbjct: 105666 agatacaaactgcagctataaagccacttgtgctaacaaataccact 105620



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>dbj|AK109565.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-A03, full
           insert sequence
          Length = 846

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                     
Query: 225 tcattattcaaacctctcttcaacaacggctcacatcttcagatgccaccaaagaatt 282
           ||||||||| || |||||||||| ||| || |||||||||||| || ||||| |||||
Sbjct: 79  tcattattccaagctctcttcaagaaccgcccacatcttcagacgcaaccaacgaatt 22



 Score = 46.1 bits (23), Expect = 0.084
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                          
Query: 66  agatacaaactgcagcaacaaagccactagttcttaccaataccact 112
           |||||||||||||||| | ||||||||| || || || |||||||||
Sbjct: 214 agatacaaactgcagctataaagccacttgtgctaacaaataccact 168



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>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 6       cacgggcacactcatcaagcg 26
               |||||||||||||||||||||
Sbjct: 1112021 cacgggcacactcatcaagcg 1112001



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>emb|CR387992.11| Zebrafish DNA sequence from clone DKEY-234K24 in linkage group 1,
           complete sequence
          Length = 76732

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 254 ctcacatcttcagatgccacc 274
           |||||||||||||||||||||
Sbjct: 505 ctcacatcttcagatgccacc 485



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>emb|BX664742.15| Zebrafish DNA sequence from clone DKEY-193L3 in linkage group 8,
            complete sequence
          Length = 215608

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 248  caacggctcacatcttcagatgccacca 275
            ||||| |||||| |||||||||||||||
Sbjct: 8277 caacgtctcacaccttcagatgccacca 8304



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>emb|BX061463.1|CNS09JL7 Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAC42BC01 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 940

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 344 gcgaagcgacccccatcagg 363
           ||||||||||||||||||||
Sbjct: 559 gcgaagcgacccccatcagg 578



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>gb|AC154642.2| Mus musculus BAC clone RP23-277C14 from chromosome 14, complete sequence
          Length = 211315

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 310    acttcaagcaacaaatgcaa 329
              ||||||||||||||||||||
Sbjct: 124146 acttcaagcaacaaatgcaa 124127



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>emb|BX322655.10| Zebrafish DNA sequence from clone DKEYP-53E12 in linkage group 8,
             complete sequence
          Length = 184723

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 248   caacggctcacatcttcagatgccacca 275
             ||||| |||||| |||||||||||||||
Sbjct: 13721 caacgtctcacaccttcagatgccacca 13694



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>gb|AC023718.4| Drosophila melanogaster X BAC RP98-7P15 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 164415

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 166   aacaaaatctactaaaagcc 185
             ||||||||||||||||||||
Sbjct: 36454 aacaaaatctactaaaagcc 36435



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>dbj|AP007159.1| Aspergillus oryzae RIB40 genomic DNA, SC026
          Length = 2324132

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 182     agcccttcttgcctttcttt 201
               ||||||||||||||||||||
Sbjct: 1335944 agcccttcttgcctttcttt 1335925



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>gb|AE003486.2| Drosophila melanogaster chromosome X, section 38 of 74 of the complete
             sequence
          Length = 328128

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 166   aacaaaatctactaaaagcc 185
             ||||||||||||||||||||
Sbjct: 33682 aacaaaatctactaaaagcc 33663



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>dbj|AP000925.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-759M17, complete
             sequence
          Length = 177831

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 58    actccaaaagatacaaactg 77
             ||||||||||||||||||||
Sbjct: 51121 actccaaaagatacaaactg 51102



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>gb|AC142274.3| Mus musculus BAC clone RP23-251M14 from 6, complete sequence
          Length = 179732

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 301   aacaccacaacttcaagcaa 320
             ||||||||||||||||||||
Sbjct: 53604 aacaccacaacttcaagcaa 53585



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>dbj|AP006119.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT45C16, TM0203,
             complete sequence
          Length = 110764

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 27    caaaattgacaaatctcacc 46
             ||||||||||||||||||||
Sbjct: 76222 caaaattgacaaatctcacc 76241


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,517,188
Number of Sequences: 3902068
Number of extensions: 3517188
Number of successful extensions: 89490
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89438
Number of HSP's gapped (non-prelim): 52
length of query: 388
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 366
effective length of database: 17,147,199,772
effective search space: 6275875116552
effective search space used: 6275875116552
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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