| Clone Name | rbags27h15 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 52.0 bits (26), Expect = 0.001 Identities = 50/58 (86%) Strand = Plus / Minus Query: 225 tcattattcaaacctctcttcaacaacggctcacatcttcagatgccaccaaagaatt 282 ||||||||| || |||||||||| ||| || |||||||||||| || ||||| ||||| Sbjct: 23318789 tcattattccaagctctcttcaagaaccgcccacatcttcagacgcaaccaacgaatt 23318732 Score = 46.1 bits (23), Expect = 0.084 Identities = 41/47 (87%) Strand = Plus / Minus Query: 66 agatacaaactgcagcaacaaagccactagttcttaccaataccact 112 |||||||||||||||| | ||||||||| || || || ||||||||| Sbjct: 23318924 agatacaaactgcagctataaagccacttgtgctaacaaataccact 23318878
>dbj|AP003333.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1103C09 Length = 163996 Score = 52.0 bits (26), Expect = 0.001 Identities = 50/58 (86%) Strand = Plus / Minus Query: 225 tcattattcaaacctctcttcaacaacggctcacatcttcagatgccaccaaagaatt 282 ||||||||| || |||||||||| ||| || |||||||||||| || ||||| ||||| Sbjct: 44487 tcattattccaagctctcttcaagaaccgcccacatcttcagacgcaaccaacgaatt 44430 Score = 46.1 bits (23), Expect = 0.084 Identities = 41/47 (87%) Strand = Plus / Minus Query: 66 agatacaaactgcagcaacaaagccactagttcttaccaataccact 112 |||||||||||||||| | ||||||||| || || || ||||||||| Sbjct: 44622 agatacaaactgcagctataaagccacttgtgctaacaaataccact 44576
>dbj|AP003253.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0451D05 Length = 148381 Score = 52.0 bits (26), Expect = 0.001 Identities = 50/58 (86%) Strand = Plus / Minus Query: 225 tcattattcaaacctctcttcaacaacggctcacatcttcagatgccaccaaagaatt 282 ||||||||| || |||||||||| ||| || |||||||||||| || ||||| ||||| Sbjct: 105531 tcattattccaagctctcttcaagaaccgcccacatcttcagacgcaaccaacgaatt 105474 Score = 46.1 bits (23), Expect = 0.084 Identities = 41/47 (87%) Strand = Plus / Minus Query: 66 agatacaaactgcagcaacaaagccactagttcttaccaataccact 112 |||||||||||||||| | ||||||||| || || || ||||||||| Sbjct: 105666 agatacaaactgcagctataaagccacttgtgctaacaaataccact 105620
>dbj|AK109565.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-A03, full insert sequence Length = 846 Score = 52.0 bits (26), Expect = 0.001 Identities = 50/58 (86%) Strand = Plus / Minus Query: 225 tcattattcaaacctctcttcaacaacggctcacatcttcagatgccaccaaagaatt 282 ||||||||| || |||||||||| ||| || |||||||||||| || ||||| ||||| Sbjct: 79 tcattattccaagctctcttcaagaaccgcccacatcttcagacgcaaccaacgaatt 22 Score = 46.1 bits (23), Expect = 0.084 Identities = 41/47 (87%) Strand = Plus / Minus Query: 66 agatacaaactgcagcaacaaagccactagttcttaccaataccact 112 |||||||||||||||| | ||||||||| || || || ||||||||| Sbjct: 214 agatacaaactgcagctataaagccacttgtgctaacaaataccact 168
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 6 cacgggcacactcatcaagcg 26 ||||||||||||||||||||| Sbjct: 1112021 cacgggcacactcatcaagcg 1112001
>emb|CR387992.11| Zebrafish DNA sequence from clone DKEY-234K24 in linkage group 1, complete sequence Length = 76732 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 254 ctcacatcttcagatgccacc 274 ||||||||||||||||||||| Sbjct: 505 ctcacatcttcagatgccacc 485
>emb|BX664742.15| Zebrafish DNA sequence from clone DKEY-193L3 in linkage group 8, complete sequence Length = 215608 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 248 caacggctcacatcttcagatgccacca 275 ||||| |||||| ||||||||||||||| Sbjct: 8277 caacgtctcacaccttcagatgccacca 8304
>emb|BX061463.1|CNS09JL7 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAC42BC01 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 940 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 344 gcgaagcgacccccatcagg 363 |||||||||||||||||||| Sbjct: 559 gcgaagcgacccccatcagg 578
>gb|AC154642.2| Mus musculus BAC clone RP23-277C14 from chromosome 14, complete sequence Length = 211315 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 acttcaagcaacaaatgcaa 329 |||||||||||||||||||| Sbjct: 124146 acttcaagcaacaaatgcaa 124127
>emb|BX322655.10| Zebrafish DNA sequence from clone DKEYP-53E12 in linkage group 8, complete sequence Length = 184723 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 248 caacggctcacatcttcagatgccacca 275 ||||| |||||| ||||||||||||||| Sbjct: 13721 caacgtctcacaccttcagatgccacca 13694
>gb|AC023718.4| Drosophila melanogaster X BAC RP98-7P15 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 164415 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 aacaaaatctactaaaagcc 185 |||||||||||||||||||| Sbjct: 36454 aacaaaatctactaaaagcc 36435
>dbj|AP007159.1| Aspergillus oryzae RIB40 genomic DNA, SC026 Length = 2324132 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 agcccttcttgcctttcttt 201 |||||||||||||||||||| Sbjct: 1335944 agcccttcttgcctttcttt 1335925
>gb|AE003486.2| Drosophila melanogaster chromosome X, section 38 of 74 of the complete sequence Length = 328128 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 aacaaaatctactaaaagcc 185 |||||||||||||||||||| Sbjct: 33682 aacaaaatctactaaaagcc 33663
>dbj|AP000925.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-759M17, complete sequence Length = 177831 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 actccaaaagatacaaactg 77 |||||||||||||||||||| Sbjct: 51121 actccaaaagatacaaactg 51102
>gb|AC142274.3| Mus musculus BAC clone RP23-251M14 from 6, complete sequence Length = 179732 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 301 aacaccacaacttcaagcaa 320 |||||||||||||||||||| Sbjct: 53604 aacaccacaacttcaagcaa 53585
>dbj|AP006119.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT45C16, TM0203, complete sequence Length = 110764 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 caaaattgacaaatctcacc 46 |||||||||||||||||||| Sbjct: 76222 caaaattgacaaatctcacc 76241 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,517,188 Number of Sequences: 3902068 Number of extensions: 3517188 Number of successful extensions: 89490 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 89438 Number of HSP's gapped (non-prelim): 52 length of query: 388 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 366 effective length of database: 17,147,199,772 effective search space: 6275875116552 effective search space used: 6275875116552 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)