ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal1g21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK072916.1| Oryza sativa (japonica cultivar-group) cDNA clon... 147 4e-32
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 127 4e-26
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 127 4e-26
4gb|AC134239.2| Oryza sativa (japonica cultivar-group) chromosome... 127 4e-26
5gb|AY106941.1| Zea mays PCO113453 mRNA sequence 60 7e-06
6gb|AC087073.6| Homo sapiens BAC clone RP11-752H12 from 2, comple... 44 0.42
7gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome 42 1.7
8ref|XM_638870.1| Dictyostelium discoideum hypothetical protein (... 42 1.7
9gb|AC158155.4| Mus musculus chromosome 3, clone RP23-167L9, comp... 42 1.7
10gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome 42 1.7
11gb|AC147896.2| Xenopus tropicalis clone CH216-45L11, complete se... 42 1.7
12emb|AL512635.8| Human DNA sequence from clone RP11-15P13 on chro... 42 1.7
13gb|CP000133.1| Rhizobium etli CFN 42, complete genome 42 1.7
14gb|AC116986.2| Dictyostelium discoideum chromosome 2 map 2234041... 42 1.7
15emb|AL445595.6|HS594J14 Homo sapiens chromosome 9 BAC RP11-594J1... 42 1.7
16gb|AC165418.6| Mus musculus chromosome 7, clone RP23-148M16, com... 40 6.6
17gb|AC125180.6| Mus musculus BAC clone RP23-322K1 from chromosome... 40 6.6
18gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, ... 40 6.6
19gb|AC135423.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.6
20gb|AE006312.1| Lactococcus lactis subsp. lactis IL1403 section 7... 40 6.6
21gb|AC146207.3| Pan troglodytes BAC clone RP43-25M19 from 7, comp... 40 6.6
22gb|AC146051.2| Pan troglodytes BAC clone RP43-73B15 from 7, comp... 40 6.6
23emb|BX005169.18| Zebrafish DNA sequence from clone CH211-81D10 i... 40 6.6
24emb|BX323042.7| Zebrafish DNA sequence from clone DKEYP-78G2 in ... 40 6.6
25gb|AC074142.3|AC074142 Homo sapiens chromosome 5 clone RP11-20B1... 40 6.6
26dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
27gb|AC154563.2| Mus musculus BAC clone RP23-401E22 from chromosom... 40 6.6
28gb|AC084503.1|CBRG14I12 Caenorhabditis briggsae cosmid G14I12, c... 40 6.6
29gb|AC068121.8| Homo sapiens BAC clone RP11-181P21 from 2, comple... 40 6.6
30gb|AC016549.8| Homo sapiens chromosome 5 clone CTC-250P22, compl... 40 6.6
31gb|AC008530.7|AC008530 Homo sapiens chromosome 19 clone CTC-478M... 40 6.6
32emb|BX072556.9| Zebrafish DNA sequence from clone DKEY-29F19 in ... 40 6.6
33dbj|AK024910.1| Homo sapiens cDNA: FLJ21257 fis, clone COL01407 40 6.6
34emb|AL161666.4|CNS01RHA Human chromosome 14 DNA sequence BAC R-8... 40 6.6
35dbj|AP001317.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 6.6
36dbj|AP002427.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 6.6
37gb|AC149091.3| Mus musculus BAC clone RP23-49P22 from 7, complet... 40 6.6
38gb|AC154512.2| Mus musculus BAC clone RP24-70L20 from chromosome... 40 6.6
39emb|AL831759.5| Mouse DNA sequence from clone RP23-150J13 on chr... 40 6.6 
>dbj|AK072916.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023149A14, full
            insert sequence
          Length = 2206

 Score =  147 bits (74), Expect = 4e-32
 Identities = 217/262 (82%), Gaps = 3/262 (1%)
 Strand = Plus / Minus

                                                                        
Query: 180  gatatatacagtcatatacattacacataccaacacccattacagcactaatattattnc 239
            |||||||||||||||||| || ||||| ||||||||| || ||| |||||||||||   |
Sbjct: 2040 gatatatacagtcatatatat-acacaaaccaacacc-atgacaacactaatattagcac 1983

                                                                        
Query: 240  aaccacaaacactgtacaaatctaatcttatgaggaaggcatcagcagcgatctcagcaa 299
             || |  | |||||||||||||||||||||||||||||||||| | |||| |||||||||
Sbjct: 1982 cac-aggagcactgtacaaatctaatcttatgaggaaggcatcggtagcggtctcagcaa 1924

                                                                        
Query: 300  tgcgctgatatcaccgatgcaagaaatacttgatgaccgttacgttcattnngnagggat 359
            || ||||| ||||| ||||||||||||  |  ||||  |||| |||||||  | ||||||
Sbjct: 1923 tgggctgaaatcactgatgcaagaaatcttccatgagtgttatgttcattcagcagggat 1864

                                                                        
Query: 360  gtcagaactctgccctttttctgggttaggaggatttgttagtggaccttcatctatgct 419
            |||||||||||| ||||| ||||||||||| | | |||| |   |||||||||  |||| 
Sbjct: 1863 gtcagaactctgtcctttctctgggttaggggaacttgtcaagtgaccttcatacatgcc 1804

                                  
Query: 420  agtactaccttcattcccttga 441
            |||| |  ||||||||||||||
Sbjct: 1803 agtattgtcttcattcccttga 1782
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  127 bits (64), Expect = 4e-26
 Identities = 162/192 (84%), Gaps = 3/192 (1%)
 Strand = Plus / Minus

                                                                           
Query: 180     gatatatacagtcatatacattacacataccaacacccattacagcactaatattattnc 239
               |||||||||||||||||| || ||||| ||||||||| || ||| |||||||||||   |
Sbjct: 7566838 gatatatacagtcatatatat-acacaaaccaacacc-atgacaacactaatattagcac 7566781

                                                                           
Query: 240     aaccacaaacactgtacaaatctaatcttatgaggaaggcatcagcagcgatctcagcaa 299
                || |  | |||||||||||||||||||||||||||||||||| | |||| |||||||||
Sbjct: 7566780 cac-aggagcactgtacaaatctaatcttatgaggaaggcatcggtagcggtctcagcaa 7566722

                                                                           
Query: 300     tgcgctgatatcaccgatgcaagaaatacttgatgaccgttacgttcattnngnagggat 359
               || ||||| ||||| ||||||||||||  |  ||||  |||| |||||||  | ||||||
Sbjct: 7566721 tgggctgaaatcactgatgcaagaaatcttccatgagtgttatgttcattcagcagggat 7566662

                           
Query: 360     gtcagaactctg 371
               ||||||||||||
Sbjct: 7566661 gtcagaactctg 7566650
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  127 bits (64), Expect = 4e-26
 Identities = 162/192 (84%), Gaps = 3/192 (1%)
 Strand = Plus / Minus

                                                                           
Query: 180     gatatatacagtcatatacattacacataccaacacccattacagcactaatattattnc 239
               |||||||||||||||||| || ||||| ||||||||| || ||| |||||||||||   |
Sbjct: 7564673 gatatatacagtcatatatat-acacaaaccaacacc-atgacaacactaatattagcac 7564616

                                                                           
Query: 240     aaccacaaacactgtacaaatctaatcttatgaggaaggcatcagcagcgatctcagcaa 299
                || |  | |||||||||||||||||||||||||||||||||| | |||| |||||||||
Sbjct: 7564615 cac-aggagcactgtacaaatctaatcttatgaggaaggcatcggtagcggtctcagcaa 7564557

                                                                           
Query: 300     tgcgctgatatcaccgatgcaagaaatacttgatgaccgttacgttcattnngnagggat 359
               || ||||| ||||| ||||||||||||  |  ||||  |||| |||||||  | ||||||
Sbjct: 7564556 tgggctgaaatcactgatgcaagaaatcttccatgagtgttatgttcattcagcagggat 7564497

                           
Query: 360     gtcagaactctg 371
               ||||||||||||
Sbjct: 7564496 gtcagaactctg 7564485
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>gb|AC134239.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0042A11, complete sequence
          Length = 113049

 Score =  127 bits (64), Expect = 4e-26
 Identities = 162/192 (84%), Gaps = 3/192 (1%)
 Strand = Plus / Minus

                                                                         
Query: 180   gatatatacagtcatatacattacacataccaacacccattacagcactaatattattnc 239
             |||||||||||||||||| || ||||| ||||||||| || ||| |||||||||||   |
Sbjct: 95734 gatatatacagtcatatatat-acacaaaccaacacc-atgacaacactaatattagcac 95677

                                                                         
Query: 240   aaccacaaacactgtacaaatctaatcttatgaggaaggcatcagcagcgatctcagcaa 299
              || |  | |||||||||||||||||||||||||||||||||| | |||| |||||||||
Sbjct: 95676 cac-aggagcactgtacaaatctaatcttatgaggaaggcatcggtagcggtctcagcaa 95618

                                                                         
Query: 300   tgcgctgatatcaccgatgcaagaaatacttgatgaccgttacgttcattnngnagggat 359
             || ||||| ||||| ||||||||||||  |  ||||  |||| |||||||  | ||||||
Sbjct: 95617 tgggctgaaatcactgatgcaagaaatcttccatgagtgttatgttcattcagcagggat 95558

                         
Query: 360   gtcagaactctg 371
             ||||||||||||
Sbjct: 95557 gtcagaactctg 95546
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>gb|AY106941.1| Zea mays PCO113453 mRNA sequence
          Length = 387

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 153/195 (78%)
 Strand = Plus / Minus

                                                                       
Query: 250 actgtacaaatctaatcttatgaggaaggcatcagcagcgatctcagcaatgcgctgata 309
           |||||||||||||||| |||||| ||| |||||   |  | || |||||||| ||||  |
Sbjct: 258 actgtacaaatctaattttatgacgaacgcatcgataatgctcccagcaatgggctggaa 199

                                                                       
Query: 310 tcaccgatgcaagaaatacttgatgaccgttacgttcattnngnagggatgtcagaactc 369
            ||| ||||||||||||  || || |  ||| | ||||||  |  ||||| ||||| |||
Sbjct: 198 ccactgatgcaagaaatgttttatcagtgttgccttcattcagttgggatatcagagctc 139

                                                                       
Query: 370 tgccctttttctgggttaggaggatttgttagtggaccttcatctatgctagtactacct 429
           || ||||| ||||||||||| | | || || |  |||||||| ||||||||| | || ||
Sbjct: 138 tggcctttctctgggttaggggaagttattggatgaccttcacctatgctagaattatct 79

                          
Query: 430 tcattcccttgattg 444
           |||||||||||||||
Sbjct: 78  tcattcccttgattg 64



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 181 atatatacagtcatatacat 200
           ||||||||||||||||||||
Sbjct: 313 atatatacagtcatatacat 294
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>gb|AC087073.6| Homo sapiens BAC clone RP11-752H12 from 2, complete sequence
          Length = 141441

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 181    atatatacagtcatatacatta 202
              ||||||||||||||||||||||
Sbjct: 114250 atatatacagtcatatacatta 114271
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>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome
          Length = 4222334

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 425    taccttcattcccttgattgatctg 449
              |||||||||| ||||||||||||||
Sbjct: 978188 taccttcattgccttgattgatctg 978212
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>ref|XM_638870.1| Dictyostelium discoideum hypothetical protein (DDB0167853), partial
           mRNA
          Length = 1473

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 206 ataccaacacccattacagca 226
           |||||||||||||||||||||
Sbjct: 259 ataccaacacccattacagca 279
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>gb|AC158155.4| Mus musculus chromosome 3, clone RP23-167L9, complete sequence
          Length = 205345

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 257    aaatctaatcttatgaggaag 277
              |||||||||||||||||||||
Sbjct: 157797 aaatctaatcttatgaggaag 157777
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>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome
          Length = 4222645

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 425    taccttcattcccttgattgatctg 449
              |||||||||| ||||||||||||||
Sbjct: 978482 taccttcattgccttgattgatctg 978506
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>gb|AC147896.2| Xenopus tropicalis clone CH216-45L11, complete sequence
          Length = 174902

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 183   atatacagtcatatacattac 203
             |||||||||||||||||||||
Sbjct: 49726 atatacagtcatatacattac 49706
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>emb|AL512635.8| Human DNA sequence from clone RP11-15P13 on chromosome 9 Contains a
             survival of motor neuron 1, telomeric (SMN1) pseudogene
             and the 3' end of the MLLT3 gene for myeloid/lymphoid or
             mixed-lineage leukemia (trithorax homolog, Drosophila);
             translocated to, 3 (AF9), complete sequence
          Length = 178631

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 181   atatatacagtcatatacatt 201
             |||||||||||||||||||||
Sbjct: 12783 atatatacagtcatatacatt 12763
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>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 294     cagcaatgcgctgatatcacc 314
               |||||||||||||||||||||
Sbjct: 2927065 cagcaatgcgctgatatcacc 2927085
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>gb|AC116986.2| Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4,
              complete sequence
          Length = 333321

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 206    ataccaacacccattacagca 226
              |||||||||||||||||||||
Sbjct: 114343 ataccaacacccattacagca 114363
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>emb|AL445595.6|HS594J14 Homo sapiens chromosome 9 BAC RP11-594J14, complete sequence
          Length = 161567

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 181    atatatacagtcatatacatt 201
              |||||||||||||||||||||
Sbjct: 121157 atatatacagtcatatacatt 121137
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>gb|AC165418.6| Mus musculus chromosome 7, clone RP23-148M16, complete sequence
          Length = 205525

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 184   tatacagtcatatacattacacat 207
             ||||||| ||||||||||||||||
Sbjct: 82426 tatacagccatatacattacacat 82449
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>gb|AC125180.6| Mus musculus BAC clone RP23-322K1 from chromosome 14, complete sequence
          Length = 200560

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 174   ttgtgggatatatacagtca 193
             ||||||||||||||||||||
Sbjct: 77278 ttgtgggatatatacagtca 77297
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>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence
          Length = 4837408

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 68      cccaaacagcgagatgacatacaa 91
               |||||||||||| |||||||||||
Sbjct: 4161044 cccaaacagcgaaatgacatacaa 4161021
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>gb|AC135423.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0015C02,
              complete sequence
          Length = 147407

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 414    tatgctagtactaccttcat 433
              ||||||||||||||||||||
Sbjct: 130487 tatgctagtactaccttcat 130468
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>gb|AE006312.1| Lactococcus lactis subsp. lactis IL1403 section 74 of 218 of the
            complete genome
          Length = 10348

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 38   gattgtttcttcaaccactt 57
            ||||||||||||||||||||
Sbjct: 7384 gattgtttcttcaaccactt 7365
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>gb|AC146207.3| Pan troglodytes BAC clone RP43-25M19 from 7, complete sequence
          Length = 179594

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 181    atatatacagtcatatacat 200
              ||||||||||||||||||||
Sbjct: 149089 atatatacagtcatatacat 149070
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>gb|AC146051.2| Pan troglodytes BAC clone RP43-73B15 from 7, complete sequence
          Length = 157886

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 181   atatatacagtcatatacat 200
             ||||||||||||||||||||
Sbjct: 60281 atatatacagtcatatacat 60262
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>emb|BX005169.18| Zebrafish DNA sequence from clone CH211-81D10 in linkage group 14,
             complete sequence
          Length = 164868

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                         
Query: 181   atatatacagtcatatacattacacata 208
             ||||||||||| ||||||||||||||||
Sbjct: 83874 atatatacagt-atatacattacacata 83848
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>emb|BX323042.7| Zebrafish DNA sequence from clone DKEYP-78G2 in linkage group 6,
             complete sequence
          Length = 206473

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 71    aaacagcgagatgacatacaatta 94
             ||||||||| ||||||||||||||
Sbjct: 33982 aaacagcgacatgacatacaatta 33959
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>gb|AC074142.3|AC074142 Homo sapiens chromosome 5 clone RP11-20B15, complete sequence
          Length = 161144

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 368   tctgccctttttctgggtta 387
             ||||||||||||||||||||
Sbjct: 12109 tctgccctttttctgggtta 12128
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 414      tatgctagtactaccttcat 433
                ||||||||||||||||||||
Sbjct: 23068007 tatgctagtactaccttcat 23067988
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>gb|AC154563.2| Mus musculus BAC clone RP23-401E22 from chromosome 14, complete
             sequence
          Length = 206798

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 174   ttgtgggatatatacagtca 193
             ||||||||||||||||||||
Sbjct: 14230 ttgtgggatatatacagtca 14211
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>gb|AC084503.1|CBRG14I12 Caenorhabditis briggsae cosmid G14I12, complete sequence
          Length = 18871

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 427  ccttcattcccttgattgat 446
            ||||||||||||||||||||
Sbjct: 4180 ccttcattcccttgattgat 4199
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>gb|AC068121.8| Homo sapiens BAC clone RP11-181P21 from 2, complete sequence
          Length = 170846

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 260   tctaatcttatgaggaaggcatca 283
             |||||||| |||||||||||||||
Sbjct: 62897 tctaatctaatgaggaaggcatca 62874
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>gb|AC016549.8| Homo sapiens chromosome 5 clone CTC-250P22, complete sequence
          Length = 167830

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 368   tctgccctttttctgggtta 387
             ||||||||||||||||||||
Sbjct: 46807 tctgccctttttctgggtta 46788
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>gb|AC008530.7|AC008530 Homo sapiens chromosome 19 clone CTC-478M6, complete sequence
          Length = 89095

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 181   atatatacagtcatatacat 200
             ||||||||||||||||||||
Sbjct: 46737 atatatacagtcatatacat 46756
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>emb|BX072556.9| Zebrafish DNA sequence from clone DKEY-29F19 in linkage group 6,
             complete sequence
          Length = 163223

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 71    aaacagcgagatgacatacaatta 94
             ||||||||| ||||||||||||||
Sbjct: 54070 aaacagcgacatgacatacaatta 54093
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>dbj|AK024910.1| Homo sapiens cDNA: FLJ21257 fis, clone COL01407
          Length = 2835

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 260 tctaatcttatgaggaaggcatca 283
           |||||||| |||||||||||||||
Sbjct: 113 tctaatctaatgaggaaggcatca 136
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>emb|AL161666.4|CNS01RHA Human chromosome 14 DNA sequence BAC R-89K22 of library RPCI-11 from
            chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 167108

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 106  ggatactgttacaaactaaa 125
            ||||||||||||||||||||
Sbjct: 4605 ggatactgttacaaactaaa 4624
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>dbj|AP001317.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-684B20, complete
              sequence
          Length = 166459

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 181    atatatacagtcatatacat 200
              ||||||||||||||||||||
Sbjct: 132299 atatatacagtcatatacat 132280
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>dbj|AP002427.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-90I16, complete
            sequence
          Length = 154159

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 181  atatatacagtcatatacat 200
            ||||||||||||||||||||
Sbjct: 2693 atatatacagtcatatacat 2674
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>gb|AC149091.3| Mus musculus BAC clone RP23-49P22 from 7, complete sequence
          Length = 240997

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 184    tatacagtcatatacattacacat 207
              ||||||| ||||||||||||||||
Sbjct: 129158 tatacagccatatacattacacat 129135
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>gb|AC154512.2| Mus musculus BAC clone RP24-70L20 from chromosome 16, complete sequence
          Length = 166329

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 181   atatatacagtcatatacat 200
             ||||||||||||||||||||
Sbjct: 78222 atatatacagtcatatacat 78203
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>emb|AL831759.5| Mouse DNA sequence from clone RP23-150J13 on chromosome X, complete
            sequence
          Length = 29788

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 181  atatatacagtcatatacat 200
            ||||||||||||||||||||
Sbjct: 3542 atatatacagtcatatacat 3561


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,424,559
Number of Sequences: 3902068
Number of extensions: 3424559
Number of successful extensions: 56898
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 56730
Number of HSP's gapped (non-prelim): 164
length of query: 490
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 468
effective length of database: 17,147,199,772
effective search space: 8024889493296
effective search space used: 8024889493296
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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