>COPE_ARATH (O64748) Probable coatomer subunit epsilon (Epsilon-coat protein)|
           (Epsilon-COP)
          Length = 293

 Score =  178 bits (452), Expect = 8e-45
 Identities = 84/119 (70%), Positives = 101/119 (84%)
 Frame = -2

Query: 559 LANAWLDIAVGGXKIREAYLIFQDFAEKYPMTXMVLNGKAVCCMHMGSFXXXXXXXXXXL 380
           LA+AWL++AVGG KI+EAYLIF+DF+EKYPMT ++LNGKAVCCM MG+F          L
Sbjct: 175 LASAWLNLAVGGSKIQEAYLIFEDFSEKYPMTCLILNGKAVCCMQMGNFDEAETLLLEAL 234

Query: 379 NKDAKDPETLANLIVCNLHLGKPSSRYFSQLKLSHPDHVLVKTTTSAEDNFERALQAVA 203
           NKDAKDPETLANL+VC+LH+GK SSR+ SQLKLSHP+H+LVK  +SAEDNFERA+Q VA
Sbjct: 235 NKDAKDPETLANLVVCSLHVGKSSSRHLSQLKLSHPEHILVKRVSSAEDNFERAVQLVA 293

>COPE_CRIGR (Q60445) Coatomer subunit epsilon (Epsilon-coat protein)|
           (Epsilon-COP) (LDLF)
          Length = 307

 Score =  100 bits (248), Expect = 4e-21
 Identities = 55/120 (45%), Positives = 77/120 (64%), Gaps = 4/120 (3%)
 Frame = -2

Query: 559 LANAWLDIAVGGXKIREAYLIFQDFAEKYPMTXMVLNGKAVCCMHMGSFXXXXXXXXXXL 380
           LA AW+++AVGG K++EAY IFQ+ A+K   T ++LNG+A C    G +          L
Sbjct: 183 LATAWVNLAVGGEKLQEAYYIFQELADKCSPTLLLLNGQAACHSAQGRWETAEGVLQEAL 242

Query: 379 NKDAKDPETLANLIVCNLHLGKP---SSRYFSQLKLSHPDHVLVKTTTSAEDNFER-ALQ 212
           +KD+  PETL NLIV + HLGKP   ++RY SQLK +H  H  +K   + E++F+R ALQ
Sbjct: 243 DKDSGHPETLINLIVLSQHLGKPPEVTNRYLSQLKDAHRTHPFIKEYQAKENDFDRLALQ 302

>COPE_MOUSE (O89079) Coatomer subunit epsilon (Epsilon-coat protein)|
           (Epsilon-COP)
          Length = 307

 Score = 99.4 bits (246), Expect = 6e-21
 Identities = 52/116 (44%), Positives = 74/116 (63%), Gaps = 3/116 (2%)
 Frame = -2

Query: 559 LANAWLDIAVGGXKIREAYLIFQDFAEKYPMTXMVLNGKAVCCMHMGSFXXXXXXXXXXL 380
           LA AW+++AVGG K++EAY IFQ+ A+K   T ++LNG+A C    G +          L
Sbjct: 183 LATAWVNLAVGGEKLQEAYYIFQELADKCSPTLLLLNGQAACHSAQGRWETAEGVLQEAL 242

Query: 379 NKDAKDPETLANLIVCNLHLGKP---SSRYFSQLKLSHPDHVLVKTTTSAEDNFER 221
           +KD+  PETL NLIV + HLGKP   ++RY SQLK +H  H  +K   + E++F+R
Sbjct: 243 DKDSGHPETLINLIVLSQHLGKPPEVTNRYLSQLKDAHRAHPFIKEYQAKENDFDR 298

>COPE_HUMAN (O14579) Coatomer subunit epsilon (Epsilon-coat protein)|
           (Epsilon-COP)
          Length = 307

 Score = 99.0 bits (245), Expect = 8e-21
 Identities = 51/116 (43%), Positives = 73/116 (62%), Gaps = 3/116 (2%)
 Frame = -2

Query: 559 LANAWLDIAVGGXKIREAYLIFQDFAEKYPMTXMVLNGKAVCCMHMGSFXXXXXXXXXXL 380
           LA AW+ +A GG K+++AY IFQ+ A+K   T ++LNG+A C M  G +          L
Sbjct: 183 LATAWVSLATGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGLLQEAL 242

Query: 379 NKDAKDPETLANLIVCNLHLGKP---SSRYFSQLKLSHPDHVLVKTTTSAEDNFER 221
           +KD+  PETL NLIV + HLGKP   ++RY SQLK +H  H  +K   + E++F+R
Sbjct: 243 DKDSGYPETLVNLIVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYQAKENDFDR 298

>COPE_BOVIN (Q28104) Coatomer subunit epsilon (Epsilon-coat protein)|
           (Epsilon-COP)
          Length = 307

 Score = 99.0 bits (245), Expect = 8e-21
 Identities = 50/116 (43%), Positives = 73/116 (62%), Gaps = 3/116 (2%)
 Frame = -2

Query: 559 LANAWLDIAVGGXKIREAYLIFQDFAEKYPMTXMVLNGKAVCCMHMGSFXXXXXXXXXXL 380
           LA AW+ +A GG K+++AY IFQ+ A+K   T ++LNG+A C M  G +          L
Sbjct: 183 LATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEAL 242

Query: 379 NKDAKDPETLANLIVCNLHLGKP---SSRYFSQLKLSHPDHVLVKTTTSAEDNFER 221
           +KD+  PETL NL+V + HLGKP   ++RY SQLK +H  H  +K   + E++F+R
Sbjct: 243 DKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRAKENDFDR 298

>COPE_CAEEL (O62246) Probable coatomer subunit epsilon (Epsilon-coat protein)|
           (Epsilon-COP)
          Length = 292

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 3/116 (2%)
 Frame = -2

Query: 559 LANAWLDIAVGGXKIREAYLIFQDFAEKYPMTXMVLNGKAVCCMHMGSFXXXXXXXXXXL 380
           LANA +       K+++A  I+ + ++KY  T  +   +AV  +    +          L
Sbjct: 170 LANALVTSFGASGKVKDALYIYSEMSDKYGRTTDLEMHQAVVSILTQDYAAAEELLESAL 229

Query: 379 NKDAKDPETLANLIV---CNLHLGKPSSRYFSQLKLSHPDHVLVKTTTSAEDNFER 221
            +D KD + L N IV    N        R+ SQLK  HP+H  V      E  F+R
Sbjct: 230 ERDNKDADVLINSIVSAQLNEKDDDVVERFISQLKHEHPNHPWVIDFNEKEAEFDR 285

>BCR_HUMAN (P11274) Breakpoint cluster region protein (EC 2.7.11.1) (NY-REN-26|
           antigen)
          Length = 1271

 Score = 33.9 bits (76), Expect = 0.32
 Identities = 26/101 (25%), Positives = 35/101 (34%), Gaps = 10/101 (9%)
 Frame = -2

Query: 499 IFQDFAEKYPMTXMVLNGKAVCCMHMGSFXXXXXXXXXXLNKDAKDPETLANLIVCNLHL 320
           +++ F + Y    + +     CC     F           NKDAKDP T  +L      L
Sbjct: 590 VYRAFVDNY---GVAMEMAEKCCQANAQFAEISENLRARSNKDAKDPTTKNSL---ETLL 643

Query: 319 GKPSSR----------YFSQLKLSHPDHVLVKTTTSAEDNF 227
            KP  R                 SHPDH L++       NF
Sbjct: 644 YKPVDRVTRSTLVLHDLLKHTPASHPDHPLLQDALRISQNF 684

>OBSCN_HUMAN (Q5VST9) Obscurin (Obscurin-myosin light chain kinase)|
            (Obscurin-MLCK) (Obscurin-RhoGEF)
          Length = 7968

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 6/146 (4%)
 Frame = +3

Query: 15   ARLEILHIYPFYSGCFEYRVGRPVCYHIEQYKAKTNTIHSVKALQ-NGTGEAQRANCNQA 191
            A L IL + P  +G +  + G           A ++T  +V+A +   TG  Q A   + 
Sbjct: 2523 AELRILRLMPADAGVYRCQAG----------SAHSSTEVTVEAREVTVTGPLQDAEATEE 2572

Query: 192  RMFQATAWSALS-KLSSADVVVLTST*SGC----DSFSWLKYRDDGLPRWRLHTIRLARV 356
                   W++ S +LS  D  V  S  +G     DSF  + ++       R HT+ L  +
Sbjct: 2573 ------GWASFSCELSHEDEEVEWSL-NGMPLYNDSFHEISHKG------RRHTLVLKSI 2619

Query: 357  SGSFASLFRASSNRVSASSKLPICIQ 434
              + A + RASS +VS S++L + ++
Sbjct: 2620 QRADAGIVRASSLKVSTSARLEVRVK 2645

>SECY_PYRSA (P38397) Preprotein translocase secY subunit (Fragment)|
          Length = 412

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 117 TNTIHSVKALQNGTGEAQRANCNQARMFQATAWSALSKL 233
           T +I +++ LQ   GEA R   +Q   ++A  W+A+  L
Sbjct: 88  TTSIPNLEKLQKEEGEAGRQKISQITRYRALGWAAIQSL 126

>TTC15_HUMAN (Q8WVT3) Tetratricopeptide repeat protein 15 (TPR repeat protein|
           15)
          Length = 735

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 36/125 (28%), Positives = 48/125 (38%), Gaps = 14/125 (11%)
 Frame = -2

Query: 544 LDIAVGGXKIREAYLIFQDFAEKYPMTXMVLNGKAVCCM-----HMG--SFXXXXXXXXX 386
           + + +G  K  E Y  FQD  EK       L GK +  M     H+G  +F         
Sbjct: 589 ISLQIGDIKTAEKY--FQD-VEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTE 645

Query: 385 XLNKDAKDPETLANLIVCNLHLG--KPSSRYFSQLKLSHPDH-----VLVKTTTSAEDNF 227
            L  D ++     N  VC L+LG  K S R    +    P H     VL   TT  E   
Sbjct: 646 ILRMDPRNAVANNNAAVCLLYLGKLKDSLRQLEAMVQQDPRHYLHESVLFNLTTMYELES 705

Query: 226 ERALQ 212
            R++Q
Sbjct: 706 SRSMQ 710


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,069,307
Number of Sequences: 219361
Number of extensions: 1561385
Number of successful extensions: 3513
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3507
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4585734400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)