ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags27g20 |
|---|---|
| Clone Library Name | barley_pub |
>MNB1B_MAIZE (P27347) DNA-binding protein MNB1B (HMG1-like protein)| Length = 157 Score = 45.1 bits (105), Expect = 8e-05 Identities = 20/49 (40%), Positives = 32/49 (65%) Frame = -2 Query: 452 DEDKAPYVEKAGQKKQDYEKTKASFENKESVSSKKAKTQDDEEAEGSKS 306 + DKAPYV KA + K +Y K A++ ES ++KKA +++EE + +S Sbjct: 85 ESDKAPYVAKANKLKLEYNKAIAAYNKGESTAAKKAPAKEEEEEDEEES 133
>HMGL_WHEAT (P40621) HMG1/2-like protein| Length = 161 Score = 39.3 bits (90), Expect = 0.005 Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 8/57 (14%) Frame = -2 Query: 452 DEDKAPYVEKAGQKKQDYEKTKASFENKES--------VSSKKAKTQDDEEAEGSKS 306 + +KAPYV KA + K +Y K A++ ES ++K+ + +D+EE++ SKS Sbjct: 86 ESEKAPYVAKANKLKGEYNKAIAAYNKGESAAAAAPKKAAAKEVEEEDEEESDKSKS 142
>HMGL_IPONI (P40619) HMG1/2-like protein| Length = 144 Score = 38.9 bits (89), Expect = 0.006 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 9/54 (16%) Frame = -2 Query: 446 DKAPYVEKAGQKKQDYEKTKASF---------ENKESVSSKKAKTQDDEEAEGS 312 +KAP++ KA ++KQ+YEK ++ E +ES S+ DDE+ +GS Sbjct: 82 EKAPFISKAEKRKQEYEKNLQAYNKKQAAGAAEEEESDKSRSEVNDDDEDQDGS 135
>HMGB3_HUMAN (O15347) High mobility group protein B3 (High mobility group| protein 4) (HMG-4) (High mobility group protein 2a) (HMG-2a) Length = 199 Score = 38.1 bits (87), Expect = 0.010 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 9/54 (16%) Frame = -2 Query: 452 DEDKAPYVEKAGQKKQDYEKTKASFENK---------ESVSSKKAKTQDDEEAE 318 D +K PY+ KA + K+ YEK A +++K V+ KK + +D+EE E Sbjct: 135 DSEKQPYITKAAKLKEKYEKDVADYKSKGKFDGAKGPAKVARKKVEEEDEEEEE 188
>HMGL_VICFA (P40620) HMG1/2-like protein| Length = 149 Score = 37.7 bits (86), Expect = 0.014 Identities = 21/50 (42%), Positives = 35/50 (70%), Gaps = 1/50 (2%) Frame = -2 Query: 452 DEDKAPYVEKAGQKKQDYEKTKASFENKESVSSKKAKTQDDEE-AEGSKS 306 +E+KAPYV++A +KK++YE T ++ +KK + +DDEE ++ SKS Sbjct: 89 EEEKAPYVDRALKKKEEYEITLQAY-------NKKLEGKDDEEGSDKSKS 131
>HMGB3_MOUSE (O54879) High mobility group protein B3 (High mobility group| protein 4) (HMG-4) (High mobility group protein 2a) (HMG-2a) Length = 199 Score = 37.0 bits (84), Expect = 0.023 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 9/54 (16%) Frame = -2 Query: 452 DEDKAPYVEKAGQKKQDYEKTKASFENK---------ESVSSKKAKTQDDEEAE 318 D +K PYV KA + K+ YEK A +++K V+ KK + +++EE E Sbjct: 135 DNEKQPYVTKAAKLKEKYEKDVADYKSKGKFDGAKGPAKVARKKVEEEEEEEEE 188
>HMGL_SOYBN (P26585) HMG1/2-like protein (SB11 protein)| Length = 152 Score = 35.4 bits (80), Expect = 0.067 Identities = 18/49 (36%), Positives = 29/49 (59%) Frame = -2 Query: 452 DEDKAPYVEKAGQKKQDYEKTKASFENKESVSSKKAKTQDDEEAEGSKS 306 D +KAPYV K+ ++K +YEK ++ K++ D+EE+E S S Sbjct: 88 DAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEGPTGG---DEEESEKSVS 133
>HMGT_ONCMY (P07746) High mobility group-T protein (HMG-T) (HMG-T1) (HMG-1)| Length = 204 Score = 35.0 bits (79), Expect = 0.088 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 7/49 (14%) Frame = -2 Query: 449 EDKAPYVEKAGQKKQDYEKTKASFENKESV-------SSKKAKTQDDEE 324 EDK PY +KA + K+ YEK ++ NK V ++ AK DD++ Sbjct: 138 EDKVPYEKKASRLKEKYEKDITAYRNKGKVPVSMPAKAAAPAKDDDDDD 186
>HMGB1_RAT (P63159) High mobility group protein B1 (High mobility group| protein 1) (HMG-1) (Amphoterin) (Heparin-binding protein p30) Length = 214 Score = 34.3 bits (77), Expect = 0.15 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 12/56 (21%) Frame = -2 Query: 449 EDKAPYVEKAGQKKQDYEKTKASFEN------------KESVSSKKAKTQDDEEAE 318 +DK PY +KA + K+ YEK A++ K S KK + +DDEE E Sbjct: 138 DDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDDEEDE 193
>HMGB1_MOUSE (P63158) High mobility group protein B1 (High mobility group| protein 1) (HMG-1) Length = 214 Score = 34.3 bits (77), Expect = 0.15 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 12/56 (21%) Frame = -2 Query: 449 EDKAPYVEKAGQKKQDYEKTKASFEN------------KESVSSKKAKTQDDEEAE 318 +DK PY +KA + K+ YEK A++ K S KK + +DDEE E Sbjct: 138 DDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDDEEDE 193
>HMGB1_CRIGR (P07156) High mobility group protein B1 (High mobility group| protein 1) (HMG-1) (Fragment) Length = 180 Score = 34.3 bits (77), Expect = 0.15 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 12/56 (21%) Frame = -2 Query: 449 EDKAPYVEKAGQKKQDYEKTKASFEN------------KESVSSKKAKTQDDEEAE 318 +DK PY +KA + K+ YEK A++ K S KK + +DDEE E Sbjct: 104 DDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDDEEDE 159
>HMGB2_CHICK (P26584) High mobility group protein B2 (High mobility group| protein 2) (HMG-2) Length = 206 Score = 33.9 bits (76), Expect = 0.20 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 12/56 (21%) Frame = -2 Query: 449 EDKAPYVEKAGQKKQDYEKTKASFENKE------------SVSSKKAKTQDDEEAE 318 +DK PY +KA + K+ YEK A++ K + S KKA+ +++EE E Sbjct: 138 KDKQPYEQKAAKLKEKYEKDIAAYRAKSKSDAGKKGPGRPAGSKKKAEPEEEEEEE 193
>HMGB1_CHICK (P36194) High mobility group protein B1 (High mobility group| protein 1) (HMG-1) Length = 200 Score = 33.5 bits (75), Expect = 0.26 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 10/55 (18%) Frame = -2 Query: 452 DEDKAPYVEKAGQKKQDYEKTKASFENK----------ESVSSKKAKTQDDEEAE 318 D +K PY KA + K+ YEK A +++K + KK + +D+EE E Sbjct: 134 DGEKQPYNNKAAKLKEKYEKDVADYKSKGKFDGAKGAATKAARKKVEEEDEEEEE 188
>HMGB3_CHICK (P40618) High mobility group protein B3 (High mobility group| protein 4) (HMG-4) (High mobility group protein 2a) (HMG-2a) Length = 201 Score = 33.5 bits (75), Expect = 0.26 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 10/55 (18%) Frame = -2 Query: 452 DEDKAPYVEKAGQKKQDYEKTKASFENK----------ESVSSKKAKTQDDEEAE 318 D +K PY KA + K+ YEK A +++K + KK + +D+EE E Sbjct: 135 DGEKQPYNNKAAKLKEKYEKDVADYKSKGKFDGAKGAATKAARKKVEEEDEEEEE 189
>HMG1X_HUMAN (Q9UGV6) High mobility group protein 1-like 10 (HMG-1L10)| Length = 211 Score = 32.7 bits (73), Expect = 0.44 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 12/56 (21%) Frame = -2 Query: 449 EDKAPYVEKAGQKKQDYEKTKASFEN------------KESVSSKKAKTQDDEEAE 318 +DK PY +KA + K+ YEK A++ K S KK + ++DEE E Sbjct: 139 DDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDE 194
>HMGB2_RAT (P52925) High mobility group protein B2 (High mobility group| protein 2) (HMG-2) Length = 209 Score = 32.7 bits (73), Expect = 0.44 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 11/55 (20%) Frame = -2 Query: 449 EDKAPYVEKAGQKKQDYEKTKASFENK-----------ESVSSKKAKTQDDEEAE 318 +DK PY +KA + K+ YEK A++ K SKK +DEE E Sbjct: 138 KDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEVGKKGPGRPTGSKKKNEPEDEEEE 192
>HMGB2_PIG (P17741) High mobility group protein B2 (High mobility group| protein 2) (HMG-2) Length = 209 Score = 32.7 bits (73), Expect = 0.44 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 11/55 (20%) Frame = -2 Query: 449 EDKAPYVEKAGQKKQDYEKTKASFENK-----------ESVSSKKAKTQDDEEAE 318 +DK PY +KA + K+ YEK A++ K SKK +DEE E Sbjct: 138 KDKQPYEQKAAKLKEKYEKDIAAYRAKGKGEAGKKGPGRPTGSKKKNEPEDEEEE 192
>HMGB2_MOUSE (P30681) High mobility group protein B2 (High mobility group| protein 2) (HMG-2) Length = 209 Score = 32.7 bits (73), Expect = 0.44 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 11/55 (20%) Frame = -2 Query: 449 EDKAPYVEKAGQKKQDYEKTKASFENK-----------ESVSSKKAKTQDDEEAE 318 +DK PY +KA + K+ YEK A++ K SKK +DEE E Sbjct: 138 KDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDEEEE 192
>HMGB1_MACFA (Q4R844) High mobility group protein B1 (High mobility group| protein 1) (HMG-1) Length = 214 Score = 32.7 bits (73), Expect = 0.44 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 12/56 (21%) Frame = -2 Query: 449 EDKAPYVEKAGQKKQDYEKTKASFEN------------KESVSSKKAKTQDDEEAE 318 +DK PY +KA + K+ YEK A++ K S KK + ++DEE E Sbjct: 138 DDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDE 193
>HMGB1_HUMAN (P09429) High mobility group protein B1 (High mobility group| protein 1) (HMG-1) Length = 214 Score = 32.7 bits (73), Expect = 0.44 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 12/56 (21%) Frame = -2 Query: 449 EDKAPYVEKAGQKKQDYEKTKASFEN------------KESVSSKKAKTQDDEEAE 318 +DK PY +KA + K+ YEK A++ K S KK + ++DEE E Sbjct: 138 DDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDE 193
>HMGB1_CANFA (Q6YKA4) High mobility group protein B1 (High mobility group| protein 1) (HMG-1) Length = 214 Score = 32.7 bits (73), Expect = 0.44 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 12/56 (21%) Frame = -2 Query: 449 EDKAPYVEKAGQKKQDYEKTKASFEN------------KESVSSKKAKTQDDEEAE 318 +DK PY +KA + K+ YEK A++ K S KK + ++DEE E Sbjct: 138 DDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDE 193
>HMGB1_BOVIN (P10103) High mobility group protein B1 (High mobility group| protein 1) (HMG-1) Length = 214 Score = 32.7 bits (73), Expect = 0.44 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 12/56 (21%) Frame = -2 Query: 449 EDKAPYVEKAGQKKQDYEKTKASFEN------------KESVSSKKAKTQDDEEAE 318 +DK PY +KA + K+ YEK A++ K S KK + ++DEE E Sbjct: 138 DDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDE 193
>HMGB2_HUMAN (P26583) High mobility group protein B2 (High mobility group| protein 2) (HMG-2) Length = 208 Score = 32.7 bits (73), Expect = 0.44 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 11/55 (20%) Frame = -2 Query: 449 EDKAPYVEKAGQKKQDYEKTKASFENK-----------ESVSSKKAKTQDDEEAE 318 +DK PY +KA + K+ YEK A++ K SKK +DEE E Sbjct: 138 KDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDEEEE 192
>HMGB1_PIG (P12682) High mobility group protein B1 (High mobility group| protein 1) (HMG-1) Length = 214 Score = 32.3 bits (72), Expect = 0.57 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 12/56 (21%) Frame = -2 Query: 449 EDKAPYVEKAGQKKQDYEKTKASFEN------------KESVSSKKAKTQDDEEAE 318 +DK PY +KA + K+ YEK A++ K S KK + ++DEE E Sbjct: 138 DDKHPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDE 193
>VAT1_BRARE (Q8JFV8) Synaptic vesicle membrane protein VAT-1 homolog (EC| 1.-.-.-) Length = 484 Score = 32.0 bits (71), Expect = 0.74 Identities = 16/48 (33%), Positives = 27/48 (56%) Frame = -2 Query: 452 DEDKAPYVEKAGQKKQDYEKTKASFENKESVSSKKAKTQDDEEAEGSK 309 D+ K +K +KK+D +K +A E K+ K+ +DD++AE K Sbjct: 429 DDKKKDDKKKDDKKKEDKKKDEAKKEEKKDEKKKEEAKKDDKKAEEKK 476
>CRTC_CAEEL (P27798) Calreticulin precursor| Length = 395 Score = 31.6 bits (70), Expect = 0.97 Identities = 16/43 (37%), Positives = 23/43 (53%) Frame = -2 Query: 446 DKAPYVEKAGQKKQDYEKTKASFENKESVSSKKAKTQDDEEAE 318 DK VEK ++K D E KA E ++ +K +DD+E E Sbjct: 343 DKLKTVEKEKKEKADEETRKAEEEARKKAEEEKEAKKDDDEEE 385
>PHPA_PLACH (Q02752) Acidic phosphoprotein precursor (50 kDa antigen)| Length = 441 Score = 30.8 bits (68), Expect = 1.7 Identities = 13/40 (32%), Positives = 27/40 (67%) Frame = -2 Query: 428 EKAGQKKQDYEKTKASFENKESVSSKKAKTQDDEEAEGSK 309 E+ G+KK+ EK+K +NK ++++KK K ++ ++ + K Sbjct: 369 EQKGKKKKAKEKSKKKVKNKPTMTTKKKKKKEKKKKKKEK 408
>MNN4_YEAST (P36044) Protein MNN4| Length = 1178 Score = 30.4 bits (67), Expect = 2.2 Identities = 14/43 (32%), Positives = 25/43 (58%) Frame = -2 Query: 452 DEDKAPYVEKAGQKKQDYEKTKASFENKESVSSKKAKTQDDEE 324 +E+K E+ +KK++ EK K E K+ ++ K Q++EE Sbjct: 1055 EEEKKKKEEEEKKKKEEEEKKKKEEEEKKKKEEEEKKKQEEEE 1097 Score = 28.9 bits (63), Expect = 6.3 Identities = 13/43 (30%), Positives = 25/43 (58%) Frame = -2 Query: 452 DEDKAPYVEKAGQKKQDYEKTKASFENKESVSSKKAKTQDDEE 324 +E+K E+ +KK++ EK K E K+ ++ K +++EE Sbjct: 1063 EEEKKKKEEEEKKKKEEEEKKKKEEEEKKKQEEEEKKKKEEEE 1105 Score = 28.9 bits (63), Expect = 6.3 Identities = 13/43 (30%), Positives = 25/43 (58%) Frame = -2 Query: 452 DEDKAPYVEKAGQKKQDYEKTKASFENKESVSSKKAKTQDDEE 324 +E+K E+ +KK++ EK K E K+ ++ K +++EE Sbjct: 1047 EEEKKKKEEEEKKKKEEEEKKKKEEEEKKKKEEEEKKKKEEEE 1089
>HMG1A_CHITE (P40622) Mobility group protein 1A| Length = 114 Score = 30.0 bits (66), Expect = 2.8 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 21/67 (31%) Frame = -2 Query: 449 EDKAPYVEKAGQKKQDYEKTKASFE---------------------NKESVSSKKAKTQD 333 +DK+ + KA + K++YEK FE K + SKK ++D Sbjct: 47 KDKSEWEAKAAKMKEEYEKAMKEFERNGGDKSSGASTKKRGKAAEKKKPAKKSKKKDSED 106 Query: 332 DEEAEGS 312 DEE + S Sbjct: 107 DEEEDES 113
>CBF5_CANAL (O43101) Centromere/microtubule-binding protein CBF5| (Centromere-binding factor 5) (Small nucleolar RNP protein CBF5) (H/ACA snoRNP protein CBF5) Length = 479 Score = 30.0 bits (66), Expect = 2.8 Identities = 15/47 (31%), Positives = 23/47 (48%) Frame = -2 Query: 449 EDKAPYVEKAGQKKQDYEKTKASFENKESVSSKKAKTQDDEEAEGSK 309 EDK+ EK +K++ +K K + K+ KK K +DD K Sbjct: 427 EDKSEKKEKKDKKEKKEKKDKKEKKEKKDKKEKKRKAEDDSSKSEKK 473
>DAXX_CERAE (O18805) Death domain-associated protein 6 (Daxx)| Length = 736 Score = 29.3 bits (64), Expect = 4.8 Identities = 13/45 (28%), Positives = 24/45 (53%) Frame = -2 Query: 452 DEDKAPYVEKAGQKKQDYEKTKASFENKESVSSKKAKTQDDEEAE 318 DED E+ +++++ E+ FE +E + + +DDEE E Sbjct: 437 DEDDEESDEEEEEEEEEEEEEATDFEEEEDLEQMQEGQEDDEEEE 481
>13S1_FAGES (O23878) 13S globulin seed storage protein 1 precursor| (Legumin-like protein 1) [Contains: 13S globulin seed storage protein 1 acidic chain; 13S globulin seed storage protein 1 basic chain] Length = 565 Score = 29.3 bits (64), Expect = 4.8 Identities = 12/34 (35%), Positives = 21/34 (61%) Frame = -2 Query: 422 AGQKKQDYEKTKASFENKESVSSKKAKTQDDEEA 321 AGQ KQ E ++ + +E S ++++ DD+EA Sbjct: 270 AGQSKQSREDRRSQRQTREEGSDRQSRESDDDEA 303
>HD2A_MAIZE (O24591) Histone deacetylase 2a (HD2a) (Zm-HD2a) (Nucleolar histone| deacetylase HD2-p39) Length = 307 Score = 29.3 bits (64), Expect = 4.8 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 6/51 (11%) Frame = -2 Query: 452 DEDK---APYVE---KAGQKKQDYEKTKASFENKESVSSKKAKTQDDEEAE 318 DED+ P V+ KA +KKQ ++ + +K S SKK+K DD + + Sbjct: 107 DEDEELNVPVVKENGKADEKKQKSQEKAVAAPSKSSPDSKKSKDDDDSDED 157
>ISW1_YEAST (P38144) Chromatin remodelling complex ATPase chain ISW1 (EC| 3.6.1.-) Length = 1129 Score = 28.9 bits (63), Expect = 6.3 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%) Frame = -2 Query: 452 DEDKAPY--VEKAGQKKQDYEKTKASFENKESVSSKKAKTQDDEEAEG 315 D+ KA Y + +KKQ E K S N + ++ ++ K + D E+EG Sbjct: 836 DDVKAAYGDISDEEEKKQKLELLKLSVNNSQPLTEEEEKMKADWESEG 883
>NCOR1_MOUSE (Q60974) Nuclear receptor corepressor 1 (N-CoR1) (N-CoR) (Retinoid| X receptor-interacting protein 13) (RIP13) Length = 2453 Score = 28.9 bits (63), Expect = 6.3 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%) Frame = -2 Query: 452 DEDKAPYVEKAGQKKQDYEKTKASFENKESVSSK---KAKTQDDEEAE 318 +EDKA EK ++K+D E+ ++KE+ K +A ++ EE E Sbjct: 518 EEDKAEKTEKKEEEKKDDEEKDDKEDSKETTKEKDRTEATAEEPEERE 565
>HD2C_MAIZE (Q9M4U4) Histone deacetylase 2c (HD2c) (Zm-HD2c)| Length = 300 Score = 28.9 bits (63), Expect = 6.3 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = -2 Query: 425 KAGQKKQDYEKTKASFENKESVSSKKAKTQDDEEAE 318 KA +KKQ ++ + +K S SKK+K DD + + Sbjct: 122 KADEKKQKSQEKAVAAPSKSSPDSKKSKDDDDSDED 157
>NCOR1_HUMAN (O75376) Nuclear receptor corepressor 1 (N-CoR1) (N-CoR)| Length = 2440 Score = 28.5 bits (62), Expect = 8.2 Identities = 15/45 (33%), Positives = 23/45 (51%) Frame = -2 Query: 452 DEDKAPYVEKAGQKKQDYEKTKASFENKESVSSKKAKTQDDEEAE 318 +EDKA EK ++K+D E+ ++KE+ K EE E Sbjct: 518 EEDKAEKTEKKEEEKKDEEEKDEKEDSKENTKEKDKIDGTAEETE 562
>FTSK_LISMO (Q8Y7A3) DNA translocase ftsK| Length = 757 Score = 28.5 bits (62), Expect = 8.2 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%) Frame = -2 Query: 452 DEDKAPYVEKAGQKKQDYEK-TKASFENK 369 +++KAP EK QK+QD E + SFEN+ Sbjct: 257 EQEKAPVEEKISQKEQDLEMFQQESFENE 285 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,923,647 Number of Sequences: 219361 Number of extensions: 794342 Number of successful extensions: 2582 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 2447 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2573 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2793557952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
