ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags27g17 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT018908.1| Zea mays clone EL01T0402E10.d mRNA sequence Length = 1455 Score = 65.9 bits (33), Expect = 1e-07 Identities = 81/97 (83%) Strand = Plus / Minus Query: 488 gcctgtgctagtccataggatggtggtatctgtgtgtgtgcataagaagatggagcctgt 547 ||||||||||| | ||||||| ||||| ||||||||| |||| | |||||| ||||| Sbjct: 1080 gcctgtgctagactgtaggatgatggtagctgtgtgtgcccatacgcagatggtgcctgc 1021 Query: 548 gtttgtccatatgatgatagtccctgagctgagccat 584 |||||||||||||||| | | |||||||||| |||| Sbjct: 1020 gtttgtccatatgatggttgcgcctgagctgaaccat 984
>gb|AY109527.1| Zea mays CL8266_1 mRNA sequence Length = 673 Score = 65.9 bits (33), Expect = 1e-07 Identities = 81/97 (83%) Strand = Plus / Plus Query: 488 gcctgtgctagtccataggatggtggtatctgtgtgtgtgcataagaagatggagcctgt 547 ||||||||||| | ||||||| ||||| ||||||||| |||| | |||||| ||||| Sbjct: 421 gcctgtgctagactgtaggatgatggtagctgtgtgtgcccatacgcagatggtgcctgc 480 Query: 548 gtttgtccatatgatgatagtccctgagctgagccat 584 |||||||||||||||| | | |||||||||| |||| Sbjct: 481 gtttgtccatatgatggttgcgcctgagctgaaccat 517
>gb|DP000058.1| Felis catus target 117 genomic scaffold Length = 458092 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 273 agaaactaaattttactctggt 294 |||||||||||||||||||||| Sbjct: 415812 agaaactaaattttactctggt 415791
>gb|AC125085.4| Mus musculus BAC clone RP24-135G18 from chromosome 8, complete sequence Length = 168721 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 109 agacatcaccatctcatagag 129 ||||||||||||||||||||| Sbjct: 21009 agacatcaccatctcatagag 20989
>gb|AC110741.5| Homo sapiens chromosome 8, clone RP11-157E21, complete sequence Length = 156262 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 50 ccaattaaacagtatatacca 70 ||||||||||||||||||||| Sbjct: 142412 ccaattaaacagtatatacca 142432
>gb|AC133634.4| Homo sapiens chromosome 8, clone CTD-2588J1, complete sequence Length = 103181 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 50 ccaattaaacagtatatacca 70 ||||||||||||||||||||| Sbjct: 52643 ccaattaaacagtatatacca 52663
>gb|AY845133.1| Homo sapiens Lutheran blood group (Auberger b antigen included) (LU) gene, complete cds Length = 16907 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 ctccatctcagaaacaaata 188 |||||||||||||||||||| Sbjct: 9762 ctccatctcagaaacaaata 9781
>gb|AE000662.1|HUAE000662 Homo sapiens T-cell receptor alpha delta locus from bases 1000498 to 1071650 (section 5 of 5) of the Complete Nucleotide Sequence Length = 71153 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 518 tgtgtgtgtgcataagaaga 537 |||||||||||||||||||| Sbjct: 12913 tgtgtgtgtgcataagaaga 12894
>gb|AF411058.1| Homo sapiens clone BAC_22700 cytotoxic T-lymphocyte-associated protein 4 (CTLA4) and inducible T-cell co-stimulator (ICOS) genes, complete cds; and endogenous virus HERV-H, partial sequence Length = 181654 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 512 ggtatctgtgtgtgtgcataagaa 535 ||||| |||||||||||||||||| Sbjct: 105732 ggtatgtgtgtgtgtgcataagaa 105755
>gb|AC117721.8| Mus musculus chromosome 1, clone RP24-196D2, complete sequence Length = 170426 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 513 gtatctgtgtgtgtgcataa 532 |||||||||||||||||||| Sbjct: 92576 gtatctgtgtgtgtgcataa 92595
>gb|AC145760.3| Microcebus murinus clone CH257-514K9, complete sequence Length = 271789 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 508 tggtggtatctgtgtgtgtg 527 |||||||||||||||||||| Sbjct: 112564 tggtggtatctgtgtgtgtg 112545
>gb|AC110566.17| Mus musculus chromosome 5, clone RP23-300A10, complete sequence Length = 175471 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 513 gtatctgtgtgtgtgcataa 532 |||||||||||||||||||| Sbjct: 126640 gtatctgtgtgtgtgcataa 126659
>gb|AC132094.3| Mus musculus BAC clone RP24-376B20 from chromosome 3, complete sequence Length = 124872 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 117 ccatctcatagagaatgctttaaa 140 ||||||||||||| |||||||||| Sbjct: 94765 ccatctcatagagcatgctttaaa 94788
>gb|AC125540.4| Mus musculus BAC clone RP23-229O18 from chromosome 15, complete sequence Length = 162455 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 555 catatgatgatagtccctgagctg 578 |||||||||||||| ||||||||| Sbjct: 56279 catatgatgatagtgcctgagctg 56256
>gb|AC123876.5| Mus musculus BAC clone RP23-270P19 from chromosome 3, complete sequence Length = 203639 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 117 ccatctcatagagaatgctttaaa 140 ||||||||||||| |||||||||| Sbjct: 187100 ccatctcatagagcatgctttaaa 187077
>gb|AC116585.3| Mus musculus BAC clone RP23-358A16 from chromosome 3, complete sequence Length = 227492 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 173 atctcagaaacaaataggct 192 |||||||||||||||||||| Sbjct: 224122 atctcagaaacaaataggct 224103
>gb|AC126682.3| Mus musculus BAC clone RP23-8E3 from 15, complete sequence Length = 221352 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 555 catatgatgatagtccctgagctg 578 |||||||||||||| ||||||||| Sbjct: 29313 catatgatgatagtgcctgagctg 29336
>gb|AC117187.3| Mus musculus BAC clone RP23-41M4 from 1, complete sequence Length = 138404 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 acatgtaacaaaattgacag 20 |||||||||||||||||||| Sbjct: 20535 acatgtaacaaaattgacag 20554
>gb|AC123556.4| Mus musculus BAC clone RP23-176M9 from 1, complete sequence Length = 198900 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 acatgtaacaaaattgacag 20 |||||||||||||||||||| Sbjct: 175773 acatgtaacaaaattgacag 175792
>gb|AC023669.8| Homo sapiens BAC clone RP11-432O19 from 7, complete sequence Length = 207806 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 aaaattgctgttacttcttg 98 |||||||||||||||||||| Sbjct: 10557 aaaattgctgttacttcttg 10576
>gb|AC004836.2| Homo sapiens PAC clone RP4-568B10 from 7, complete sequence Length = 103694 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 568 tccctgagctgagccatgag 587 |||||||||||||||||||| Sbjct: 50466 tccctgagctgagccatgag 50485
>gb|AC004892.2| Homo sapiens PAC clone RP4-802A9 from 7, complete sequence Length = 66273 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 atagagaatgctttaaaacc 143 |||||||||||||||||||| Sbjct: 24489 atagagaatgctttaaaacc 24470
>gb|AC145752.1| Pan troglodytes BAC clone RP43-32B3 from 7, complete sequence Length = 143608 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 atagagaatgctttaaaacc 143 |||||||||||||||||||| Sbjct: 14715 atagagaatgctttaaaacc 14696
>gb|AC158913.4| Mus musculus chromosome 5, clone RP24-268J3, complete sequence Length = 152822 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 513 gtatctgtgtgtgtgcataa 532 |||||||||||||||||||| Sbjct: 9530 gtatctgtgtgtgtgcataa 9549
>emb|AL157373.23| Human DNA sequence from clone RP11-456H18 on chromosome 6 Contains two novel genes, the 5' end of the HIVEP1 gene for human immunodeficiency virus type I enhancer binding protein 1 and three CpG islands, complete sequence Length = 93847 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 512 ggtatctgtgtgtgtgcata 531 |||||||||||||||||||| Sbjct: 35561 ggtatctgtgtgtgtgcata 35542
>emb|AL157703.14| Human DNA sequence from clone RP11-79K3 on chromosome 9p23-24.3, complete sequence Length = 90278 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 507 atggtggtatctgtgtgtgtgcat 530 |||||||||| ||||||||||||| Sbjct: 52107 atggtggtatgtgtgtgtgtgcat 52130
>gb|AC158960.4| Mus musculus chromosome 1, clone RP23-315O2, complete sequence Length = 176947 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 513 gtatctgtgtgtgtgcataa 532 |||||||||||||||||||| Sbjct: 139008 gtatctgtgtgtgtgcataa 138989
>gb|AC157919.5| Mus musculus chromosome 3, clone RP23-131B7, complete sequence Length = 190453 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 atctcagaaacaaataggct 192 |||||||||||||||||||| Sbjct: 99593 atctcagaaacaaataggct 99612
>gb|AC099773.6| Mus Musculus Strain C57BL6/J Chromosome 5 RP23-335D24, Complete Sequence, complete sequence Length = 191559 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 512 ggtatctgtgtgtgtgcata 531 |||||||||||||||||||| Sbjct: 84646 ggtatctgtgtgtgtgcata 84665
>gb|AC092306.2| Homo sapiens chromosome 19 clone LLNLR-231D4, complete sequence Length = 35144 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 ctccatctcagaaacaaata 188 |||||||||||||||||||| Sbjct: 19855 ctccatctcagaaacaaata 19874
>gb|AC139053.15| Mus musculus chromosome 1, clone RP23-2I19, complete sequence Length = 232850 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 513 gtatctgtgtgtgtgcataa 532 |||||||||||||||||||| Sbjct: 24912 gtatctgtgtgtgtgcataa 24893
>dbj|AK147615.1| Mus musculus adult male brain UNDEFINED_CELL_LINE cDNA, RIKEN full-length enriched library, clone:M5C1091A08 product:unclassifiable, full insert sequence Length = 6842 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 513 gtatctgtgtgtgtgcataagaag 536 |||| ||||||||||||||||||| Sbjct: 3488 gtatgtgtgtgtgtgcataagaag 3511
>gb|M94081.1|HUMTCRADCV Human Tcr-C-delta gene, exons 1-4; Tcr-V-delta gene, exons 1-2; T-cell receptor alpha (Tcr-alpha) gene, J1-J61 segments; and Tcr-C-alpha gene, exons 1-4 Length = 97630 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 518 tgtgtgtgtgcataagaaga 537 |||||||||||||||||||| Sbjct: 47022 tgtgtgtgtgcataagaaga 47003
>gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome V, complete sequence Length = 1519138 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 ctcgagacatcaccatctca 124 |||||||||||||||||||| Sbjct: 335129 ctcgagacatcaccatctca 335148
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 ctcgagacatcaccatctca 124 |||||||||||||||||||| Sbjct: 35378165 ctcgagacatcaccatctca 35378184
>gb|AF335500.1|AF335500 Physarum polycephalum major plasmodial myosin heavy chain (mynP1) mRNA, complete cds Length = 6484 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 584 tgaggtcgcgctgttgttgc 603 |||||||||||||||||||| Sbjct: 3359 tgaggtcgcgctgttgttgc 3340
>gb|AC109333.28| Homo sapiens chromosome 17, clone RP11-115H24, complete sequence Length = 181825 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 516 tctgtgtgtgtgcataagaa 535 |||||||||||||||||||| Sbjct: 78612 tctgtgtgtgtgcataagaa 78593
>gb|AC010138.6| Homo sapiens BAC clone RP11-175H4 from 2, complete sequence Length = 160970 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 512 ggtatctgtgtgtgtgcataagaa 535 ||||| |||||||||||||||||| Sbjct: 119669 ggtatgtgtgtgtgtgcataagaa 119692
>dbj|AP003734.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1088C09 Length = 154084 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 ctcgagacatcaccatctca 124 |||||||||||||||||||| Sbjct: 2114 ctcgagacatcaccatctca 2133
>dbj|AP003315.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0439E11 Length = 146083 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 ctcgagacatcaccatctca 124 |||||||||||||||||||| Sbjct: 142026 ctcgagacatcaccatctca 142045
>emb|AJ535718.1|HSA535718 Homo sapiens partial ICOS gene for inducible costimulator protein Length = 186585 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 512 ggtatctgtgtgtgtgcataagaa 535 ||||| |||||||||||||||||| Sbjct: 139022 ggtatgtgtgtgtgtgcataagaa 138999
>gb|AF225900.1|AF225900 Homo sapiens PAC clone p61e2, complete sequence Length = 94645 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 512 ggtatctgtgtgtgtgcataagaa 535 ||||| |||||||||||||||||| Sbjct: 90501 ggtatgtgtgtgtgtgcataagaa 90524
>gb|AC171557.7| Mus musculus chromosome 7, clone RP24-62E17, complete sequence Length = 163762 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 511 tggtatctgtgtgtgtgcat 530 |||||||||||||||||||| Sbjct: 34996 tggtatctgtgtgtgtgcat 34977
>gb|AC134918.5| Mus musculus BAC clone RP23-71G16 from 3, complete sequence Length = 191764 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 513 gtatctgtgtgtgtgcataagaag 536 |||| ||||||||||||||||||| Sbjct: 77289 gtatgtgtgtgtgtgcataagaag 77266
>ref|NG_001332.1| Homo sapiens T cell receptor alpha delta locus (TCRA/TCRD) on chromosome 14 Length = 1071646 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 518 tgtgtgtgtgcataagaaga 537 |||||||||||||||||||| Sbjct: 1013408 tgtgtgtgtgcataagaaga 1013389
>gb|DP000022.1| Microcebus murinus target 1 genomic scaffold Length = 1595145 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 508 tggtggtatctgtgtgtgtg 527 |||||||||||||||||||| Sbjct: 987020 tggtggtatctgtgtgtgtg 987001
>emb|AL844881.5| Mouse DNA sequence from clone RP23-244B19 on chromosome 2, complete sequence Length = 219340 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 518 tgtgtgtgtgcataagaaga 537 |||||||||||||||||||| Sbjct: 35179 tgtgtgtgtgcataagaaga 35198 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,236,631 Number of Sequences: 3902068 Number of extensions: 6236631 Number of successful extensions: 135295 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 135119 Number of HSP's gapped (non-prelim): 176 length of query: 617 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 594 effective length of database: 17,143,297,704 effective search space: 10183118836176 effective search space used: 10183118836176 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
