| Clone Name | rbags27g10 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X95257.1|HVXYLISOP H.vulgare mRNA for xylose isomerase Length = 1710 Score = 807 bits (407), Expect = 0.0 Identities = 446/460 (96%), Gaps = 1/460 (0%) Strand = Plus / Minus Query: 1 cgtgttgaagcaacgagtttaattttgatataaggttacattattttcagctccacgcag 60 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1699 cgtgttgaag-aacgagtttaattttgatataaggttacattattttcagctccacgcag 1641 Query: 61 tttgtttacagggttcactgcatggaggcctaactatagaacatcgcctgtagcgacgag 120 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 1640 tttgtttacagggttcactgcatggaggcctaactatagaacatcgcctgtagtgacgag 1581 Query: 121 gacggctgggcgttccaaggtcgcgctcttgcttttttattcctagaaccgtgggccgcc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1580 gacggctgggcgttccaaggtcgcgctcttgcttttttattcctagaaccgtgggccgcc 1521 Query: 181 atctacagagcggattggaacagcatctcagccaattcctgtttgcccgatggaacggtt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1520 atctacagagcggattggaacagcatctcagccaattcctgtttgcccgatggaacggtt 1461 Query: 241 ggctcgccccactccaagaccttcttttctagcgtttcaaagtcgcccttcccagccttg 300 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | Sbjct: 1460 ggctcgccccactccaaggccttcttttctagcgtttcaaagtcgcccttcccagcctcg 1401 Query: 301 atcatggcaccaatctnagtgtcaaagctctggtagcgtttgcgtacaagctcntccagg 360 |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| Sbjct: 1400 atcatggcaccaatctcagtgtcaaagctctggtagcgtttgcgtacaagctcgtccagg 1341 Query: 361 gaaccatncttaatcagcttggcaacattgcggaggccgcgggccatggtgtccatncca 420 ||||||| || |||||||||| ||||||||||| |||||||||||||||||||||| ||| Sbjct: 1340 gaaccatcctcaatcagcttgacaacattgcggcggccgcgggccatggtgtccatccca 1281 Query: 421 nagatatnggcaataaacaggtcctnaacatcagtactct 460 |||||| ||||||||||||||||| |||||||||||||| Sbjct: 1280 gagatatgggcaataaacaggtcctcaacatcagtactct 1241
>emb|X95256.1|HVXYLISOG H.vulgare xylose isomerase gene Length = 4473 Score = 414 bits (209), Expect = e-112 Identities = 219/221 (99%), Gaps = 1/221 (0%) Strand = Plus / Minus Query: 1 cgtgttgaagcaacgagtttaattttgatataaggttacattattttcagctccacgcag 60 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4462 cgtgttgaag-aacgagtttaattttgatataaggttacattattttcagctccacgcag 4404 Query: 61 tttgtttacagggttcactgcatggaggcctaactatagaacatcgcctgtagcgacgag 120 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 4403 tttgtttacagggttcactgcatggaggcctaactatagaacatcgcctgtagtgacgag 4344 Query: 121 gacggctgggcgttccaaggtcgcgctcttgcttttttattcctagaaccgtgggccgcc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4343 gacggctgggcgttccaaggtcgcgctcttgcttttttattcctagaaccgtgggccgcc 4284 Query: 181 atctacagagcggattggaacagcatctcagccaattcctg 221 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 4283 atctacagagcggattggaacagcatctcagccaattcctg 4243 Score = 153 bits (77), Expect = 6e-34 Identities = 80/81 (98%) Strand = Plus / Minus Query: 218 cctgtttgcccgatggaacggttggctcgccccactccaagaccttcttttctagcgttt 277 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 4135 cctgtttgcccgatggaacggttggctcgccccactccaaggccttcttttctagcgttt 4076 Query: 278 caaagtcgcccttcccagcct 298 ||||||||||||||||||||| Sbjct: 4075 caaagtcgcccttcccagcct 4055 Score = 137 bits (69), Expect = 4e-29 Identities = 83/89 (93%) Strand = Plus / Minus Query: 372 aatcagcttggcaacattgcggaggccgcgggccatggtgtccatnccanagatatnggc 431 |||||||||| ||||||||||| |||||||||||||||||||||| ||| |||||| ||| Sbjct: 3814 aatcagcttgacaacattgcggcggccgcgggccatggtgtccatcccagagatatgggc 3755 Query: 432 aataaacaggtcctnaacatcagtactct 460 |||||||||||||| |||||||||||||| Sbjct: 3754 aataaacaggtcctcaacatcagtactct 3726 Score = 123 bits (62), Expect = 5e-25 Identities = 66/68 (97%) Strand = Plus / Minus Query: 300 gatcatggcaccaatctnagtgtcaaagctctggtagcgtttgcgtacaagctcntccag 359 ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| Sbjct: 3972 gatcatggcaccaatctcagtgtcaaagctctggtagcgtttgcgtacaagctcgtccag 3913 Query: 360 ggaaccat 367 |||||||| Sbjct: 3912 ggaaccat 3905
>gb|BT018392.1| Zea mays clone EL01N0319D07.d mRNA sequence Length = 1548 Score = 218 bits (110), Expect = 1e-53 Identities = 223/263 (84%) Strand = Plus / Minus Query: 196 tggaacagcatctcagccaattcctgtttgcccgatggaacggttggctcgccccactcc 255 |||||||| ||||| |||| |||||||||||| |||| ||| || ||||| |||||||| Sbjct: 1260 tggaacagaatctccgccagttcctgtttgccggatgcaacagtgggctcaccccactct 1201 Query: 256 aagaccttcttttctagcgtttcaaagtcgcccttcccagccttgatcatggcaccaatc 315 | ||||||||||||||||| |||||||| || |||||||||| ||||| |||||||||| Sbjct: 1200 agaaccttcttttctagcgtctcaaagtctcctttcccagcctcgatcaaggcaccaatc 1141 Query: 316 tnagtgtcaaagctctggtagcgtttgcgtacaagctcntccagggaaccatncttaatc 375 | | | |||||||||||||| || ||||| ||||| || || |||||||||| || |||| Sbjct: 1140 tcactatcaaagctctggtaccgcttgcggacaagatcatctagggaaccatcctcaatc 1081 Query: 376 agcttggcaacattgcggaggccgcgggccatggtgtccatnccanagatatnggcaata 435 ||||||||||| || || ||||| || |||| ||||||||| || |||||| ||||| | Sbjct: 1080 agcttggcaacgttacgaaggccacgtgccagggtgtccattccggagatatgggcaaga 1021 Query: 436 aacaggtcctnaacatcagtact 458 |||| ||||| |||||||||||| Sbjct: 1020 aacatgtcctcaacatcagtact 998
>gb|AY104014.1| Zea mays PCO103489 mRNA sequence Length = 2135 Score = 218 bits (110), Expect = 1e-53 Identities = 223/263 (84%) Strand = Plus / Minus Query: 196 tggaacagcatctcagccaattcctgtttgcccgatggaacggttggctcgccccactcc 255 |||||||| ||||| |||| |||||||||||| |||| ||| || ||||| |||||||| Sbjct: 1838 tggaacagaatctccgccagttcctgtttgccggatgcaacagtgggctcaccccactct 1779 Query: 256 aagaccttcttttctagcgtttcaaagtcgcccttcccagccttgatcatggcaccaatc 315 | ||||||||||||||||| |||||||| || |||||||||| ||||| |||||||||| Sbjct: 1778 agaaccttcttttctagcgtctcaaagtctcctttcccagcctcgatcaaggcaccaatc 1719 Query: 316 tnagtgtcaaagctctggtagcgtttgcgtacaagctcntccagggaaccatncttaatc 375 | | | |||||||||||||| || ||||| ||||| || || |||||||||| | |||| Sbjct: 1718 tcactatcaaagctctggtaccgcttgcggacaagatcatctagggaaccatccccaatc 1659 Query: 376 agcttggcaacattgcggaggccgcgggccatggtgtccatnccanagatatnggcaata 435 ||||||||||| || |||||||| || |||| ||||||||| || |||||| ||||| | Sbjct: 1658 agcttggcaacgttacggaggccacgtgccagggtgtccattccggagatatgggcaaga 1599 Query: 436 aacaggtcctnaacatcagtact 458 |||| ||||| |||||||||||| Sbjct: 1598 aacatgtcctcaacatcagtact 1576
>ref|XM_479446.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1760 Score = 184 bits (93), Expect = 2e-43 Identities = 233/282 (82%) Strand = Plus / Minus Query: 179 ccatctacagagcggattggaacagcatctcagccaattcctgtttgcccgatggaacgg 238 ||||||| ||||| | ||||||||| |||||||||| |||||| ||||| |||||||| Sbjct: 1550 ccatctatagagcagcttggaacagaatctcagccagttcctgcttgccagatggaacaa 1491 Query: 239 ttggctcgccccactccaagaccttcttttctagcgtttcaaagtcgcccttcccagcct 298 | || || |||||||||| |||||||| ||||| || || ||||| || |||||||||| Sbjct: 1490 tgggttcaccccactccagaaccttcttctctagtgtctcgaagtctcctttcccagcct 1431 Query: 299 tgatcatggcaccaatctnagtgtcaaagctctggtagcgtttgcgtacaagctcntcca 358 |||| |||||| |||| | | ||||| ||||||||||| ||||| |||||||| |||| Sbjct: 1430 caatcaaggcaccgatctcactatcaaaactctggtagcgcttgcgaacaagctcatcca 1371 Query: 359 gggaaccatncttaatcagcttggcaacattgcggaggccgcgggccatggtgtccatnc 418 ||||||||| || ||||||||| ||||||| || ||||||||||| | ||||||||| | Sbjct: 1370 gggaaccatcctcgatcagcttgacaacattccgaaggccgcgggctagggtgtccattc 1311 Query: 419 canagatatnggcaataaacaggtcctnaacatcagtactct 460 | | |||| || | ||||| ||||| |||||||||||||| Sbjct: 1310 ccgatatatgagccagaaacatgtcctcaacatcagtactct 1269
>dbj|AK104085.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-F02, full insert sequence Length = 1177 Score = 184 bits (93), Expect = 2e-43 Identities = 233/282 (82%) Strand = Plus / Minus Query: 179 ccatctacagagcggattggaacagcatctcagccaattcctgtttgcccgatggaacgg 238 ||||||| ||||| | ||||||||| |||||||||| |||||| ||||| |||||||| Sbjct: 960 ccatctatagagcagcttggaacagaatctcagccagttcctgcttgccagatggaacaa 901 Query: 239 ttggctcgccccactccaagaccttcttttctagcgtttcaaagtcgcccttcccagcct 298 | || || |||||||||| |||||||| ||||| || || ||||| || |||||||||| Sbjct: 900 tgggttcaccccactccagaaccttcttctctagtgtctcgaagtctcctttcccagcct 841 Query: 299 tgatcatggcaccaatctnagtgtcaaagctctggtagcgtttgcgtacaagctcntcca 358 |||| |||||| |||| | | ||||| ||||||||||| ||||| |||||||| |||| Sbjct: 840 caatcaaggcaccgatctcactatcaaaactctggtagcgcttgcgaacaagctcatcca 781 Query: 359 gggaaccatncttaatcagcttggcaacattgcggaggccgcgggccatggtgtccatnc 418 ||||||||| || ||||||||| ||||||| || ||||||||||| | ||||||||| | Sbjct: 780 gggaaccatcctcgatcagcttgacaacattccgaaggccgcgggctagggtgtccattc 721 Query: 419 canagatatnggcaataaacaggtcctnaacatcagtactct 460 | | |||| || | ||||| ||||| |||||||||||||| Sbjct: 720 ccgatatatgagccagaaacatgtcctcaacatcagtactct 679
>dbj|AK072249.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001E09, full insert sequence Length = 1760 Score = 184 bits (93), Expect = 2e-43 Identities = 233/282 (82%) Strand = Plus / Minus Query: 179 ccatctacagagcggattggaacagcatctcagccaattcctgtttgcccgatggaacgg 238 ||||||| ||||| | ||||||||| |||||||||| |||||| ||||| |||||||| Sbjct: 1550 ccatctatagagcagcttggaacagaatctcagccagttcctgcttgccagatggaacaa 1491 Query: 239 ttggctcgccccactccaagaccttcttttctagcgtttcaaagtcgcccttcccagcct 298 | || || |||||||||| |||||||| ||||| || || ||||| || |||||||||| Sbjct: 1490 tgggttcaccccactccagaaccttcttctctagtgtctcgaagtctcctttcccagcct 1431 Query: 299 tgatcatggcaccaatctnagtgtcaaagctctggtagcgtttgcgtacaagctcntcca 358 |||| |||||| |||| | | ||||| ||||||||||| ||||| |||||||| |||| Sbjct: 1430 caatcaaggcaccgatctcactatcaaaactctggtagcgcttgcgaacaagctcatcca 1371 Query: 359 gggaaccatncttaatcagcttggcaacattgcggaggccgcgggccatggtgtccatnc 418 ||||||||| || ||||||||| ||||||| || ||||||||||| | ||||||||| | Sbjct: 1370 gggaaccatcctcgatcagcttgacaacattccgaaggccgcgggctagggtgtccattc 1311 Query: 419 canagatatnggcaataaacaggtcctnaacatcagtactct 460 | | |||| || | ||||| ||||| |||||||||||||| Sbjct: 1310 ccgatatatgagccagaaacatgtcctcaacatcagtactct 1269
>gb|AF358766.1| Oryza sativa clone Osl369 xylose isomerase mRNA, partial cds Length = 415 Score = 174 bits (88), Expect = 2e-40 Identities = 228/277 (82%) Strand = Plus / Minus Query: 179 ccatctacagagcggattggaacagcatctcagccaattcctgtttgcccgatggaacgg 238 ||||||| ||||| | ||||||||| |||||||||| |||||| ||||| |||||||| Sbjct: 277 ccatctatagagcagcttggaacagaatctcagccagttcctgcttgccagatggaacaa 218 Query: 239 ttggctcgccccactccaagaccttcttttctagcgtttcaaagtcgcccttcccagcct 298 | || || |||||||||| |||||||| ||||| || || ||||| || |||||||||| Sbjct: 217 tgggttcaccccactccagaaccttcttctctagtgtctcgaagtctcctttcccagcct 158 Query: 299 tgatcatggcaccaatctnagtgtcaaagctctggtagcgtttgcgtacaagctcntcca 358 |||| |||||| |||| | | ||||| ||||||||||| ||||| |||||||| |||| Sbjct: 157 caatcaaggcaccgatctcactatcaaaactctggtagcgcttgcgaacaagctcatcca 98 Query: 359 gggaaccatncttaatcagcttggcaacattgcggaggccgcgggccatggtgtccatnc 418 ||||||||| || ||||||||| ||||||| || ||||||||||| | ||||||||| | Sbjct: 97 gggaaccatcctcgatcagcttgacaacattccgaaggccgcgggctagggtgtccattc 38 Query: 419 canagatatnggcaataaacaggtcctnaacatcagt 455 | | |||| || | ||||| ||||| ||||||||| Sbjct: 37 ccgatatatgagccagaaacatgtcctcaacatcagt 1
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 65.9 bits (33), Expect = 1e-07 Identities = 58/67 (86%) Strand = Plus / Plus Query: 301 atcatggcaccaatctnagtgtcaaagctctggtagcgtttgcgtacaagctcntccagg 360 |||| |||||| |||| | | ||||| ||||||||||| ||||| |||||||| |||||| Sbjct: 28219322 atcaaggcaccgatctcactatcaaaactctggtagcgcttgcgaacaagctcatccagg 28219381 Query: 361 gaaccat 367 ||||||| Sbjct: 28219382 gaaccat 28219388 Score = 63.9 bits (32), Expect = 4e-07 Identities = 73/88 (82%) Strand = Plus / Plus Query: 373 atcagcttggcaacattgcggaggccgcgggccatggtgtccatnccanagatatnggca 432 ||||||||| ||||||| || ||||||||||| | ||||||||| || | |||| || Sbjct: 28219472 atcagcttgacaacattccgaaggccgcgggctagggtgtccattcccgatatatgagcc 28219531 Query: 433 ataaacaggtcctnaacatcagtactct 460 | ||||| ||||| |||||||||||||| Sbjct: 28219532 agaaacatgtcctcaacatcagtactct 28219559
>dbj|AP004570.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0625E02 Length = 153921 Score = 65.9 bits (33), Expect = 1e-07 Identities = 58/67 (86%) Strand = Plus / Plus Query: 301 atcatggcaccaatctnagtgtcaaagctctggtagcgtttgcgtacaagctcntccagg 360 |||| |||||| |||| | | ||||| ||||||||||| ||||| |||||||| |||||| Sbjct: 74867 atcaaggcaccgatctcactatcaaaactctggtagcgcttgcgaacaagctcatccagg 74926 Query: 361 gaaccat 367 ||||||| Sbjct: 74927 gaaccat 74933 Score = 63.9 bits (32), Expect = 4e-07 Identities = 73/88 (82%) Strand = Plus / Plus Query: 373 atcagcttggcaacattgcggaggccgcgggccatggtgtccatnccanagatatnggca 432 ||||||||| ||||||| || ||||||||||| | ||||||||| || | |||| || Sbjct: 75017 atcagcttgacaacattccgaaggccgcgggctagggtgtccattcccgatatatgagcc 75076 Query: 433 ataaacaggtcctnaacatcagtactct 460 | ||||| ||||| |||||||||||||| Sbjct: 75077 agaaacatgtcctcaacatcagtactct 75104
>gb|AC149305.19| Medicago truncatula clone mth2-78k4, complete sequence Length = 118017 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 aacgagtttaattttgatata 32 ||||||||||||||||||||| Sbjct: 91024 aacgagtttaattttgatata 91004
>gb|BC041267.1| Xenopus laevis actin related protein 2/3 complex, subunit 1A, 41kDa, mRNA (cDNA clone MGC:52839 IMAGE:4885217), complete cds Length = 1795 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 ttacattattttcagctcca 55 |||||||||||||||||||| Sbjct: 1510 ttacattattttcagctcca 1529
>ref|XM_784544.1| PREDICTED: Strongylocentrotus purpuratus similar to Retrovirus-related Pol polyprotein from transposon 297 (LOC584692), partial mRNA Length = 1789 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 ttattttcagctccacgcag 60 |||||||||||||||||||| Sbjct: 1373 ttattttcagctccacgcag 1354
>gb|AC116303.6| Homo sapiens 3 BAC RP11-276B15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 51070 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 gctcttgcttttttattcct 164 |||||||||||||||||||| Sbjct: 21516 gctcttgcttttttattcct 21535
>emb|BX469911.9| Zebrafish DNA sequence from clone DKEY-13K9 in linkage group 5, complete sequence Length = 226730 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 291 cccagccttgatcatggcaccaat 314 ||||| |||||||||||||||||| Sbjct: 82213 cccagtcttgatcatggcaccaat 82236
>gb|AC104791.3| Homo sapiens BAC clone RP11-181K12 from 4, complete sequence Length = 159969 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 gctcttgcttttttattcct 164 |||||||||||||||||||| Sbjct: 112812 gctcttgcttttttattcct 112831
>emb|AL845436.7| Mouse DNA sequence from clone RP23-299N13 on chromosome 2, complete sequence Length = 126095 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 cagccaattcctgtttgccc 228 |||||||||||||||||||| Sbjct: 43989 cagccaattcctgtttgccc 44008 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,130,157 Number of Sequences: 3902068 Number of extensions: 3130157 Number of successful extensions: 52366 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52320 Number of HSP's gapped (non-prelim): 46 length of query: 460 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 438 effective length of database: 17,147,199,772 effective search space: 7510473500136 effective search space used: 7510473500136 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)