ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags27g10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|X95257.1|HVXYLISOP H.vulgare mRNA for xylose isomerase 807 0.0
2emb|X95256.1|HVXYLISOG H.vulgare xylose isomerase gene 414 e-112
3gb|BT018392.1| Zea mays clone EL01N0319D07.d mRNA sequence 218 1e-53
4gb|AY104014.1| Zea mays PCO103489 mRNA sequence 218 1e-53
5ref|XM_479446.1| Oryza sativa (japonica cultivar-group), mRNA 184 2e-43
6dbj|AK104085.1| Oryza sativa (japonica cultivar-group) cDNA clon... 184 2e-43
7dbj|AK072249.1| Oryza sativa (japonica cultivar-group) cDNA clon... 184 2e-43
8gb|AF358766.1| Oryza sativa clone Osl369 xylose isomerase mRNA, ... 174 2e-40
9dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
10dbj|AP004570.5| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
11gb|AC149305.19| Medicago truncatula clone mth2-78k4, complete se... 42 1.6
12gb|BC041267.1| Xenopus laevis actin related protein 2/3 complex,... 40 6.2
13ref|XM_784544.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 6.2
14gb|AC116303.6| Homo sapiens 3 BAC RP11-276B15 (Roswell Park Canc... 40 6.2
15emb|BX469911.9| Zebrafish DNA sequence from clone DKEY-13K9 in l... 40 6.2
16gb|AC104791.3| Homo sapiens BAC clone RP11-181K12 from 4, comple... 40 6.2
17emb|AL845436.7| Mouse DNA sequence from clone RP23-299N13 on chr... 40 6.2

>emb|X95257.1|HVXYLISOP H.vulgare mRNA for xylose isomerase
          Length = 1710

 Score =  807 bits (407), Expect = 0.0
 Identities = 446/460 (96%), Gaps = 1/460 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    cgtgttgaagcaacgagtttaattttgatataaggttacattattttcagctccacgcag 60
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1699 cgtgttgaag-aacgagtttaattttgatataaggttacattattttcagctccacgcag 1641

                                                                        
Query: 61   tttgtttacagggttcactgcatggaggcctaactatagaacatcgcctgtagcgacgag 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1640 tttgtttacagggttcactgcatggaggcctaactatagaacatcgcctgtagtgacgag 1581

                                                                        
Query: 121  gacggctgggcgttccaaggtcgcgctcttgcttttttattcctagaaccgtgggccgcc 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1580 gacggctgggcgttccaaggtcgcgctcttgcttttttattcctagaaccgtgggccgcc 1521

                                                                        
Query: 181  atctacagagcggattggaacagcatctcagccaattcctgtttgcccgatggaacggtt 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1520 atctacagagcggattggaacagcatctcagccaattcctgtttgcccgatggaacggtt 1461

                                                                        
Query: 241  ggctcgccccactccaagaccttcttttctagcgtttcaaagtcgcccttcccagccttg 300
            |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1460 ggctcgccccactccaaggccttcttttctagcgtttcaaagtcgcccttcccagcctcg 1401

                                                                        
Query: 301  atcatggcaccaatctnagtgtcaaagctctggtagcgtttgcgtacaagctcntccagg 360
            |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1400 atcatggcaccaatctcagtgtcaaagctctggtagcgtttgcgtacaagctcgtccagg 1341

                                                                        
Query: 361  gaaccatncttaatcagcttggcaacattgcggaggccgcgggccatggtgtccatncca 420
            ||||||| || |||||||||| ||||||||||| |||||||||||||||||||||| |||
Sbjct: 1340 gaaccatcctcaatcagcttgacaacattgcggcggccgcgggccatggtgtccatccca 1281

                                                    
Query: 421  nagatatnggcaataaacaggtcctnaacatcagtactct 460
             |||||| ||||||||||||||||| ||||||||||||||
Sbjct: 1280 gagatatgggcaataaacaggtcctcaacatcagtactct 1241



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>emb|X95256.1|HVXYLISOG H.vulgare xylose isomerase gene
          Length = 4473

 Score =  414 bits (209), Expect = e-112
 Identities = 219/221 (99%), Gaps = 1/221 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    cgtgttgaagcaacgagtttaattttgatataaggttacattattttcagctccacgcag 60
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4462 cgtgttgaag-aacgagtttaattttgatataaggttacattattttcagctccacgcag 4404

                                                                        
Query: 61   tttgtttacagggttcactgcatggaggcctaactatagaacatcgcctgtagcgacgag 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 4403 tttgtttacagggttcactgcatggaggcctaactatagaacatcgcctgtagtgacgag 4344

                                                                        
Query: 121  gacggctgggcgttccaaggtcgcgctcttgcttttttattcctagaaccgtgggccgcc 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4343 gacggctgggcgttccaaggtcgcgctcttgcttttttattcctagaaccgtgggccgcc 4284

                                                     
Query: 181  atctacagagcggattggaacagcatctcagccaattcctg 221
            |||||||||||||||||||||||||||||||||||||||||
Sbjct: 4283 atctacagagcggattggaacagcatctcagccaattcctg 4243



 Score =  153 bits (77), Expect = 6e-34
 Identities = 80/81 (98%)
 Strand = Plus / Minus

                                                                        
Query: 218  cctgtttgcccgatggaacggttggctcgccccactccaagaccttcttttctagcgttt 277
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 4135 cctgtttgcccgatggaacggttggctcgccccactccaaggccttcttttctagcgttt 4076

                                 
Query: 278  caaagtcgcccttcccagcct 298
            |||||||||||||||||||||
Sbjct: 4075 caaagtcgcccttcccagcct 4055



 Score =  137 bits (69), Expect = 4e-29
 Identities = 83/89 (93%)
 Strand = Plus / Minus

                                                                        
Query: 372  aatcagcttggcaacattgcggaggccgcgggccatggtgtccatnccanagatatnggc 431
            |||||||||| ||||||||||| |||||||||||||||||||||| ||| |||||| |||
Sbjct: 3814 aatcagcttgacaacattgcggcggccgcgggccatggtgtccatcccagagatatgggc 3755

                                         
Query: 432  aataaacaggtcctnaacatcagtactct 460
            |||||||||||||| ||||||||||||||
Sbjct: 3754 aataaacaggtcctcaacatcagtactct 3726



 Score =  123 bits (62), Expect = 5e-25
 Identities = 66/68 (97%)
 Strand = Plus / Minus

                                                                        
Query: 300  gatcatggcaccaatctnagtgtcaaagctctggtagcgtttgcgtacaagctcntccag 359
            ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 3972 gatcatggcaccaatctcagtgtcaaagctctggtagcgtttgcgtacaagctcgtccag 3913

                    
Query: 360  ggaaccat 367
            ||||||||
Sbjct: 3912 ggaaccat 3905



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>gb|BT018392.1| Zea mays clone EL01N0319D07.d mRNA sequence
          Length = 1548

 Score =  218 bits (110), Expect = 1e-53
 Identities = 223/263 (84%)
 Strand = Plus / Minus

                                                                        
Query: 196  tggaacagcatctcagccaattcctgtttgcccgatggaacggttggctcgccccactcc 255
            |||||||| ||||| |||| |||||||||||| |||| ||| || ||||| |||||||| 
Sbjct: 1260 tggaacagaatctccgccagttcctgtttgccggatgcaacagtgggctcaccccactct 1201

                                                                        
Query: 256  aagaccttcttttctagcgtttcaaagtcgcccttcccagccttgatcatggcaccaatc 315
            |  ||||||||||||||||| |||||||| || |||||||||| ||||| ||||||||||
Sbjct: 1200 agaaccttcttttctagcgtctcaaagtctcctttcccagcctcgatcaaggcaccaatc 1141

                                                                        
Query: 316  tnagtgtcaaagctctggtagcgtttgcgtacaagctcntccagggaaccatncttaatc 375
            | | | |||||||||||||| || ||||| ||||| || || |||||||||| || ||||
Sbjct: 1140 tcactatcaaagctctggtaccgcttgcggacaagatcatctagggaaccatcctcaatc 1081

                                                                        
Query: 376  agcttggcaacattgcggaggccgcgggccatggtgtccatnccanagatatnggcaata 435
            ||||||||||| || || ||||| || |||| ||||||||| ||  |||||| ||||| |
Sbjct: 1080 agcttggcaacgttacgaaggccacgtgccagggtgtccattccggagatatgggcaaga 1021

                                   
Query: 436  aacaggtcctnaacatcagtact 458
            |||| ||||| ||||||||||||
Sbjct: 1020 aacatgtcctcaacatcagtact 998



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>gb|AY104014.1| Zea mays PCO103489 mRNA sequence
          Length = 2135

 Score =  218 bits (110), Expect = 1e-53
 Identities = 223/263 (84%)
 Strand = Plus / Minus

                                                                        
Query: 196  tggaacagcatctcagccaattcctgtttgcccgatggaacggttggctcgccccactcc 255
            |||||||| ||||| |||| |||||||||||| |||| ||| || ||||| |||||||| 
Sbjct: 1838 tggaacagaatctccgccagttcctgtttgccggatgcaacagtgggctcaccccactct 1779

                                                                        
Query: 256  aagaccttcttttctagcgtttcaaagtcgcccttcccagccttgatcatggcaccaatc 315
            |  ||||||||||||||||| |||||||| || |||||||||| ||||| ||||||||||
Sbjct: 1778 agaaccttcttttctagcgtctcaaagtctcctttcccagcctcgatcaaggcaccaatc 1719

                                                                        
Query: 316  tnagtgtcaaagctctggtagcgtttgcgtacaagctcntccagggaaccatncttaatc 375
            | | | |||||||||||||| || ||||| ||||| || || |||||||||| |  ||||
Sbjct: 1718 tcactatcaaagctctggtaccgcttgcggacaagatcatctagggaaccatccccaatc 1659

                                                                        
Query: 376  agcttggcaacattgcggaggccgcgggccatggtgtccatnccanagatatnggcaata 435
            ||||||||||| || |||||||| || |||| ||||||||| ||  |||||| ||||| |
Sbjct: 1658 agcttggcaacgttacggaggccacgtgccagggtgtccattccggagatatgggcaaga 1599

                                   
Query: 436  aacaggtcctnaacatcagtact 458
            |||| ||||| ||||||||||||
Sbjct: 1598 aacatgtcctcaacatcagtact 1576



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>ref|XM_479446.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1760

 Score =  184 bits (93), Expect = 2e-43
 Identities = 233/282 (82%)
 Strand = Plus / Minus

                                                                        
Query: 179  ccatctacagagcggattggaacagcatctcagccaattcctgtttgcccgatggaacgg 238
            ||||||| ||||| | ||||||||| |||||||||| |||||| ||||| ||||||||  
Sbjct: 1550 ccatctatagagcagcttggaacagaatctcagccagttcctgcttgccagatggaacaa 1491

                                                                        
Query: 239  ttggctcgccccactccaagaccttcttttctagcgtttcaaagtcgcccttcccagcct 298
            | || || ||||||||||  |||||||| ||||| || || ||||| || ||||||||||
Sbjct: 1490 tgggttcaccccactccagaaccttcttctctagtgtctcgaagtctcctttcccagcct 1431

                                                                        
Query: 299  tgatcatggcaccaatctnagtgtcaaagctctggtagcgtttgcgtacaagctcntcca 358
              |||| |||||| |||| | | ||||| ||||||||||| ||||| |||||||| ||||
Sbjct: 1430 caatcaaggcaccgatctcactatcaaaactctggtagcgcttgcgaacaagctcatcca 1371

                                                                        
Query: 359  gggaaccatncttaatcagcttggcaacattgcggaggccgcgggccatggtgtccatnc 418
            ||||||||| ||  ||||||||| ||||||| || ||||||||||| | ||||||||| |
Sbjct: 1370 gggaaccatcctcgatcagcttgacaacattccgaaggccgcgggctagggtgtccattc 1311

                                                      
Query: 419  canagatatnggcaataaacaggtcctnaacatcagtactct 460
            |  | ||||  || | ||||| ||||| ||||||||||||||
Sbjct: 1310 ccgatatatgagccagaaacatgtcctcaacatcagtactct 1269



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>dbj|AK104085.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-F02, full
           insert sequence
          Length = 1177

 Score =  184 bits (93), Expect = 2e-43
 Identities = 233/282 (82%)
 Strand = Plus / Minus

                                                                       
Query: 179 ccatctacagagcggattggaacagcatctcagccaattcctgtttgcccgatggaacgg 238
           ||||||| ||||| | ||||||||| |||||||||| |||||| ||||| ||||||||  
Sbjct: 960 ccatctatagagcagcttggaacagaatctcagccagttcctgcttgccagatggaacaa 901

                                                                       
Query: 239 ttggctcgccccactccaagaccttcttttctagcgtttcaaagtcgcccttcccagcct 298
           | || || ||||||||||  |||||||| ||||| || || ||||| || ||||||||||
Sbjct: 900 tgggttcaccccactccagaaccttcttctctagtgtctcgaagtctcctttcccagcct 841

                                                                       
Query: 299 tgatcatggcaccaatctnagtgtcaaagctctggtagcgtttgcgtacaagctcntcca 358
             |||| |||||| |||| | | ||||| ||||||||||| ||||| |||||||| ||||
Sbjct: 840 caatcaaggcaccgatctcactatcaaaactctggtagcgcttgcgaacaagctcatcca 781

                                                                       
Query: 359 gggaaccatncttaatcagcttggcaacattgcggaggccgcgggccatggtgtccatnc 418
           ||||||||| ||  ||||||||| ||||||| || ||||||||||| | ||||||||| |
Sbjct: 780 gggaaccatcctcgatcagcttgacaacattccgaaggccgcgggctagggtgtccattc 721

                                                     
Query: 419 canagatatnggcaataaacaggtcctnaacatcagtactct 460
           |  | ||||  || | ||||| ||||| ||||||||||||||
Sbjct: 720 ccgatatatgagccagaaacatgtcctcaacatcagtactct 679



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>dbj|AK072249.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001E09, full
            insert sequence
          Length = 1760

 Score =  184 bits (93), Expect = 2e-43
 Identities = 233/282 (82%)
 Strand = Plus / Minus

                                                                        
Query: 179  ccatctacagagcggattggaacagcatctcagccaattcctgtttgcccgatggaacgg 238
            ||||||| ||||| | ||||||||| |||||||||| |||||| ||||| ||||||||  
Sbjct: 1550 ccatctatagagcagcttggaacagaatctcagccagttcctgcttgccagatggaacaa 1491

                                                                        
Query: 239  ttggctcgccccactccaagaccttcttttctagcgtttcaaagtcgcccttcccagcct 298
            | || || ||||||||||  |||||||| ||||| || || ||||| || ||||||||||
Sbjct: 1490 tgggttcaccccactccagaaccttcttctctagtgtctcgaagtctcctttcccagcct 1431

                                                                        
Query: 299  tgatcatggcaccaatctnagtgtcaaagctctggtagcgtttgcgtacaagctcntcca 358
              |||| |||||| |||| | | ||||| ||||||||||| ||||| |||||||| ||||
Sbjct: 1430 caatcaaggcaccgatctcactatcaaaactctggtagcgcttgcgaacaagctcatcca 1371

                                                                        
Query: 359  gggaaccatncttaatcagcttggcaacattgcggaggccgcgggccatggtgtccatnc 418
            ||||||||| ||  ||||||||| ||||||| || ||||||||||| | ||||||||| |
Sbjct: 1370 gggaaccatcctcgatcagcttgacaacattccgaaggccgcgggctagggtgtccattc 1311

                                                      
Query: 419  canagatatnggcaataaacaggtcctnaacatcagtactct 460
            |  | ||||  || | ||||| ||||| ||||||||||||||
Sbjct: 1310 ccgatatatgagccagaaacatgtcctcaacatcagtactct 1269



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>gb|AF358766.1| Oryza sativa clone Osl369 xylose isomerase mRNA, partial cds
          Length = 415

 Score =  174 bits (88), Expect = 2e-40
 Identities = 228/277 (82%)
 Strand = Plus / Minus

                                                                       
Query: 179 ccatctacagagcggattggaacagcatctcagccaattcctgtttgcccgatggaacgg 238
           ||||||| ||||| | ||||||||| |||||||||| |||||| ||||| ||||||||  
Sbjct: 277 ccatctatagagcagcttggaacagaatctcagccagttcctgcttgccagatggaacaa 218

                                                                       
Query: 239 ttggctcgccccactccaagaccttcttttctagcgtttcaaagtcgcccttcccagcct 298
           | || || ||||||||||  |||||||| ||||| || || ||||| || ||||||||||
Sbjct: 217 tgggttcaccccactccagaaccttcttctctagtgtctcgaagtctcctttcccagcct 158

                                                                       
Query: 299 tgatcatggcaccaatctnagtgtcaaagctctggtagcgtttgcgtacaagctcntcca 358
             |||| |||||| |||| | | ||||| ||||||||||| ||||| |||||||| ||||
Sbjct: 157 caatcaaggcaccgatctcactatcaaaactctggtagcgcttgcgaacaagctcatcca 98

                                                                       
Query: 359 gggaaccatncttaatcagcttggcaacattgcggaggccgcgggccatggtgtccatnc 418
           ||||||||| ||  ||||||||| ||||||| || ||||||||||| | ||||||||| |
Sbjct: 97  gggaaccatcctcgatcagcttgacaacattccgaaggccgcgggctagggtgtccattc 38

                                                
Query: 419 canagatatnggcaataaacaggtcctnaacatcagt 455
           |  | ||||  || | ||||| ||||| |||||||||
Sbjct: 37  ccgatatatgagccagaaacatgtcctcaacatcagt 1



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                            
Query: 301      atcatggcaccaatctnagtgtcaaagctctggtagcgtttgcgtacaagctcntccagg 360
                |||| |||||| |||| | | ||||| ||||||||||| ||||| |||||||| ||||||
Sbjct: 28219322 atcaaggcaccgatctcactatcaaaactctggtagcgcttgcgaacaagctcatccagg 28219381

                       
Query: 361      gaaccat 367
                |||||||
Sbjct: 28219382 gaaccat 28219388



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 73/88 (82%)
 Strand = Plus / Plus

                                                                            
Query: 373      atcagcttggcaacattgcggaggccgcgggccatggtgtccatnccanagatatnggca 432
                ||||||||| ||||||| || ||||||||||| | ||||||||| ||  | ||||  || 
Sbjct: 28219472 atcagcttgacaacattccgaaggccgcgggctagggtgtccattcccgatatatgagcc 28219531

                                            
Query: 433      ataaacaggtcctnaacatcagtactct 460
                | ||||| ||||| ||||||||||||||
Sbjct: 28219532 agaaacatgtcctcaacatcagtactct 28219559



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>dbj|AP004570.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0625E02
          Length = 153921

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                         
Query: 301   atcatggcaccaatctnagtgtcaaagctctggtagcgtttgcgtacaagctcntccagg 360
             |||| |||||| |||| | | ||||| ||||||||||| ||||| |||||||| ||||||
Sbjct: 74867 atcaaggcaccgatctcactatcaaaactctggtagcgcttgcgaacaagctcatccagg 74926

                    
Query: 361   gaaccat 367
             |||||||
Sbjct: 74927 gaaccat 74933



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 73/88 (82%)
 Strand = Plus / Plus

                                                                         
Query: 373   atcagcttggcaacattgcggaggccgcgggccatggtgtccatnccanagatatnggca 432
             ||||||||| ||||||| || ||||||||||| | ||||||||| ||  | ||||  || 
Sbjct: 75017 atcagcttgacaacattccgaaggccgcgggctagggtgtccattcccgatatatgagcc 75076

                                         
Query: 433   ataaacaggtcctnaacatcagtactct 460
             | ||||| ||||| ||||||||||||||
Sbjct: 75077 agaaacatgtcctcaacatcagtactct 75104



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>gb|AC149305.19| Medicago truncatula clone mth2-78k4, complete sequence
          Length = 118017

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 12    aacgagtttaattttgatata 32
             |||||||||||||||||||||
Sbjct: 91024 aacgagtttaattttgatata 91004



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>gb|BC041267.1| Xenopus laevis actin related protein 2/3 complex, subunit 1A, 41kDa,
            mRNA (cDNA clone MGC:52839 IMAGE:4885217), complete cds
          Length = 1795

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 36   ttacattattttcagctcca 55
            ||||||||||||||||||||
Sbjct: 1510 ttacattattttcagctcca 1529



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>ref|XM_784544.1| PREDICTED: Strongylocentrotus purpuratus similar to
            Retrovirus-related Pol polyprotein from transposon 297
            (LOC584692), partial mRNA
          Length = 1789

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 41   ttattttcagctccacgcag 60
            ||||||||||||||||||||
Sbjct: 1373 ttattttcagctccacgcag 1354



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>gb|AC116303.6| Homo sapiens 3 BAC RP11-276B15 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 51070

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 145   gctcttgcttttttattcct 164
             ||||||||||||||||||||
Sbjct: 21516 gctcttgcttttttattcct 21535



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>emb|BX469911.9| Zebrafish DNA sequence from clone DKEY-13K9 in linkage group 5,
             complete sequence
          Length = 226730

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 291   cccagccttgatcatggcaccaat 314
             ||||| ||||||||||||||||||
Sbjct: 82213 cccagtcttgatcatggcaccaat 82236



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>gb|AC104791.3| Homo sapiens BAC clone RP11-181K12 from 4, complete sequence
          Length = 159969

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 145    gctcttgcttttttattcct 164
              ||||||||||||||||||||
Sbjct: 112812 gctcttgcttttttattcct 112831



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>emb|AL845436.7| Mouse DNA sequence from clone RP23-299N13 on chromosome 2, complete
             sequence
          Length = 126095

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 209   cagccaattcctgtttgccc 228
             ||||||||||||||||||||
Sbjct: 43989 cagccaattcctgtttgccc 44008


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,130,157
Number of Sequences: 3902068
Number of extensions: 3130157
Number of successful extensions: 52366
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52320
Number of HSP's gapped (non-prelim): 46
length of query: 460
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 438
effective length of database: 17,147,199,772
effective search space: 7510473500136
effective search space used: 7510473500136
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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