ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags27g03 |
|---|---|
| Clone Library Name | barley_pub |
>COPG2_MOUSE (Q9QXK3) Coatomer subunit gamma-2 (Gamma-2 coat protein) (Gamma-2| COP) Length = 871 Score = 57.0 bits (136), Expect = 4e-08 Identities = 32/85 (37%), Positives = 49/85 (57%) Frame = -1 Query: 551 DEYGLGARESLSEAVSAVTSILGMQPCKGTEVVSSNARSHVCLLSGVYIGGVKVLVRLSF 372 + + L + ++L EAV+ + + LGMQPC+ ++ V N SH L+GVY GG +LVR Sbjct: 784 ETFALSSTKTLEEAVNNIITFLGMQPCERSDKVPENKNSHSLYLAGVYRGGYDLLVRSRL 843 Query: 371 GLSGPKEVAMKLAVRSDDPEVSDKI 297 L+ V M++ VRS + D I Sbjct: 844 ALA--DGVTMQVTVRSKERTPVDVI 866
>COPG2_HUMAN (Q9UBF2) Coatomer subunit gamma-2 (Gamma-2 coat protein) (Gamma-2| COP) Length = 871 Score = 55.1 bits (131), Expect = 1e-07 Identities = 30/85 (35%), Positives = 49/85 (57%) Frame = -1 Query: 551 DEYGLGARESLSEAVSAVTSILGMQPCKGTEVVSSNARSHVCLLSGVYIGGVKVLVRLSF 372 + + L + ++L EAV+ + + LGMQPC+ ++ V N SH L+G++ GG +LVR Sbjct: 784 ETFALSSTKTLEEAVNNIITFLGMQPCERSDKVPENKNSHSLYLAGIFRGGYDLLVRSRL 843 Query: 371 GLSGPKEVAMKLAVRSDDPEVSDKI 297 L+ V M++ VRS + D I Sbjct: 844 ALA--DGVTMQVTVRSKERTPVDVI 866
>COPG_CAEEL (Q22498) Probable coatomer subunit gamma (Gamma-coat protein)| (Gamma-COP) Length = 870 Score = 53.5 bits (127), Expect = 4e-07 Identities = 26/88 (29%), Positives = 49/88 (55%), Gaps = 1/88 (1%) Frame = -1 Query: 557 RVDEYGLGARESLSEAVSAVTSILGMQPCKGTEVVSSNARSHVCLLSGVYIGGVKVLVRL 378 R + + L E++ +AV ++ ILG+ PC+ ++ V H LSGV+ GG VL + Sbjct: 778 REETFQLSTVENIPDAVKKISEILGLVPCERSDRVPEGKTQHTVFLSGVFRGGYDVLSKA 837 Query: 377 SFGLS-GPKEVAMKLAVRSDDPEVSDKI 297 + + +AM + ++S++P V+D + Sbjct: 838 TVAVDPNDNSIAMNIIIKSNEPLVADLV 865
>COPG_BOVIN (P53620) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)| Length = 874 Score = 48.9 bits (115), Expect = 1e-05 Identities = 27/78 (34%), Positives = 42/78 (53%) Frame = -1 Query: 551 DEYGLGARESLSEAVSAVTSILGMQPCKGTEVVSSNARSHVCLLSGVYIGGVKVLVRLSF 372 + + L ++L EAV + LGM PC+ ++ V N +H LL+GV+ GG +LVR Sbjct: 787 ETFTLSTIKTLEEAVGNIVKFLGMHPCERSDKVPDNKNTHTLLLAGVFRGGHDILVRSRL 846 Query: 371 GLSGPKEVAMKLAVRSDD 318 L V M++ RS + Sbjct: 847 LLL--DTVTMQVTARSSE 862
>COPG_HUMAN (Q9Y678) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)| Length = 874 Score = 48.1 bits (113), Expect = 2e-05 Identities = 22/57 (38%), Positives = 34/57 (59%) Frame = -1 Query: 551 DEYGLGARESLSEAVSAVTSILGMQPCKGTEVVSSNARSHVCLLSGVYIGGVKVLVR 381 + + L ++L EAV + LGM PC+ ++ V N +H LL+GV+ GG +LVR Sbjct: 787 ETFTLSTIKTLEEAVGNIVKFLGMHPCERSDKVPDNKNTHTLLLAGVFRGGHDILVR 843
>COPG_SCHPO (P87140) Probable coatomer subunit gamma (Gamma-coat protein)| (Gamma-COP) Length = 905 Score = 37.4 bits (85), Expect = 0.029 Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 1/91 (1%) Frame = -1 Query: 545 YGLGARESLSEAVSAVTSILGMQPCKGTEVVSSNARSHVCLLSGVYIGGVKVLVRLSFGL 366 Y L +S S V +L MQP +GTE ++ HV LSG + G KVL + Sbjct: 818 YVLSLLDSFRSTCSRVAELLQMQPLEGTE-NPTDKPVHVMKLSGKLVNGEKVLALVKMAH 876 Query: 365 SGPKE-VAMKLAVRSDDPEVSDKIHEIVASG 276 S E + +K+ R + SD E+V G Sbjct: 877 SKDGEGITIKVIARGE----SDSSVELVVGG 903
>ERA_DEIRA (Q9RWM0) GTP-binding protein era homolog| Length = 311 Score = 30.8 bits (68), Expect = 2.7 Identities = 18/47 (38%), Positives = 23/47 (48%) Frame = +1 Query: 316 GSSDLTASFIATSLGPLSPNDNLTRTFTPPIYTPDSRHTCDLALLDT 456 G S L +F+ T + P SP TR IYT D+R L +DT Sbjct: 29 GKSTLLNAFLGTKVAPTSPRPQTTRRGVRGIYTLDNR---QLIFVDT 72
>HN_PI3HW (P12565) Hemagglutinin-neuraminidase (EC 3.2.1.18)| Length = 572 Score = 30.4 bits (67), Expect = 3.5 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%) Frame = +1 Query: 307 LTSGSSDLTASFIATSLGPLSPNDNLTRTFTPPIYTP----DSRHTCDLALLDT 456 +T G D+ S+ +G ++ N +L P I D+R +C LALL+T Sbjct: 210 ITRGCQDIGKSYQVLQIGTITVNSDLVPDLNPRISHTFNINDNRKSCSLALLNT 263
>PHF15_HUMAN (Q9NQC1) PHD finger protein 15| Length = 576 Score = 30.0 bits (66), Expect = 4.6 Identities = 11/32 (34%), Positives = 19/32 (59%) Frame = +2 Query: 11 SRHACISIHHNIFHLRQSMLKNQLCNERLSSS 106 ++HA + IFHL+ +++ LC LS+S Sbjct: 277 TKHAICKLQEQIFHLQMKLIEQDLCRAGLSTS 308
>HN_PI3HX (P12566) Hemagglutinin-neuraminidase (EC 3.2.1.18)| Length = 572 Score = 29.6 bits (65), Expect = 6.0 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%) Frame = +1 Query: 307 LTSGSSDLTASFIATSLGPLSPNDNLTRTFTPPIYTP----DSRHTCDLALLDT 456 +T G D+ S+ +G ++ N +L P I D+R +C LALL+T Sbjct: 210 ITRGCQDIGKSYQVLQIGIITVNSDLVPDLNPRISHTFNINDNRKSCSLALLNT 263
>HN_PI3HV (P12564) Hemagglutinin-neuraminidase (EC 3.2.1.18)| Length = 572 Score = 29.6 bits (65), Expect = 6.0 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%) Frame = +1 Query: 307 LTSGSSDLTASFIATSLGPLSPNDNLTRTFTPPIYTP----DSRHTCDLALLDT 456 +T G D+ S+ +G ++ N +L P I D+R +C LALL+T Sbjct: 210 ITRGCQDIGKSYQVLQIGIITVNSDLVPDLNPRISHTFNINDNRKSCSLALLNT 263
>HN_PI3HU (P12563) Hemagglutinin-neuraminidase (EC 3.2.1.18)| Length = 572 Score = 29.6 bits (65), Expect = 6.0 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%) Frame = +1 Query: 307 LTSGSSDLTASFIATSLGPLSPNDNLTRTFTPPIYTP----DSRHTCDLALLDT 456 +T G D+ S+ +G ++ N +L P I D+R +C LALL+T Sbjct: 210 ITRGCQDIGKSYQVLQIGIITVNSDLVPDLNPRISHTFNINDNRKSCSLALLNT 263
>HN_PI3HT (P12562) Hemagglutinin-neuraminidase (EC 3.2.1.18)| Length = 572 Score = 29.6 bits (65), Expect = 6.0 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%) Frame = +1 Query: 307 LTSGSSDLTASFIATSLGPLSPNDNLTRTFTPPIYTP----DSRHTCDLALLDT 456 +T G D+ S+ +G ++ N +L P I D+R +C LALL+T Sbjct: 210 ITRGCQDIGKSYQVLQIGIITVNSDLVPDLNPRISHTFNINDNRKSCSLALLNT 263
>HN_PI3HA (P12561) Hemagglutinin-neuraminidase (EC 3.2.1.18)| Length = 572 Score = 29.6 bits (65), Expect = 6.0 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%) Frame = +1 Query: 307 LTSGSSDLTASFIATSLGPLSPNDNLTRTFTPPIYTP----DSRHTCDLALLDT 456 +T G D+ S+ +G ++ N +L P I D+R +C LALL+T Sbjct: 210 ITRGCQDIGKSYQVLQIGIITVNSDLVPDLNPRISHTFNINDNRKSCSLALLNT 263
>HN_PI3H4 (P08492) Hemagglutinin-neuraminidase (EC 3.2.1.18)| Length = 572 Score = 29.6 bits (65), Expect = 6.0 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%) Frame = +1 Query: 307 LTSGSSDLTASFIATSLGPLSPNDNLTRTFTPPIYTP----DSRHTCDLALLDT 456 +T G D+ S+ +G ++ N +L P I D+R +C LALL+T Sbjct: 210 ITRGCQDIGKSYQVLQIGIITVNSDLVPDLNPRISHTFNINDNRKSCSLALLNT 263
>HN_PI3B (P06167) Hemagglutinin-neuraminidase (EC 3.2.1.18)| Length = 572 Score = 29.6 bits (65), Expect = 6.0 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 4/54 (7%) Frame = +1 Query: 307 LTSGSSDLTASFIATSLGPLSPNDNLTRTFTPPIY----TPDSRHTCDLALLDT 456 +T G D+ S+ +G ++ N +L P + D+R +C LALL+T Sbjct: 210 ITQGCQDIGKSYQVLQIGIITINSDLVPDLNPRVTHTFNIDDNRKSCSLALLNT 263
>NUGC_WHEAT (Q95H60) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 29.3 bits (64), Expect = 7.8 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = -1 Query: 416 GVYIGGVKVLVRLSFGLSGPKEVAMKLAVRSDDPEV 309 G + V L R+ +G+ P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_SACOF (Q6ENW0) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 29.3 bits (64), Expect = 7.8 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = -1 Query: 416 GVYIGGVKVLVRLSFGLSGPKEVAMKLAVRSDDPEV 309 G + V L R+ +G+ P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_SACHY (Q6L396) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 29.3 bits (64), Expect = 7.8 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = -1 Query: 416 GVYIGGVKVLVRLSFGLSGPKEVAMKLAVRSDDPEV 309 G + V L R+ +G+ P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_ORYSA (P12200) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 29.3 bits (64), Expect = 7.8 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = -1 Query: 416 GVYIGGVKVLVRLSFGLSGPKEVAMKLAVRSDDPEV 309 G + V L R+ +G+ P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_ORYNI (Q6ENH1) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 29.3 bits (64), Expect = 7.8 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = -1 Query: 416 GVYIGGVKVLVRLSFGLSGPKEVAMKLAVRSDDPEV 309 G + V L R+ +G+ P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_MAIZE (P19124) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 29.3 bits (64), Expect = 7.8 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = -1 Query: 416 GVYIGGVKVLVRLSFGLSGPKEVAMKLAVRSDDPEV 309 G + V L R+ +G+ P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,775,869 Number of Sequences: 219361 Number of extensions: 1462562 Number of successful extensions: 3771 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 3686 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3771 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4528412720 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
