ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags27f19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_463868.1| Oryza sativa (japonica cultivar-group), mRNA 125 1e-25
2dbj|AK105772.1| Oryza sativa (japonica cultivar-group) cDNA clon... 125 1e-25
3dbj|AK067366.1| Oryza sativa (japonica cultivar-group) cDNA clon... 125 1e-25
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 64 4e-07
5dbj|AP004121.3| Oryza sativa (japonica cultivar-group) genomic D... 64 4e-07
6dbj|AP004867.2| Oryza sativa (japonica cultivar-group) genomic D... 64 4e-07
7gb|AC161176.5| Mus musculus chromosome 5, clone RP24-295A5, comp... 40 5.5
8emb|Z46729.1|SC9958 S.cerevisiae chromosome XIII cosmid 9958 40 5.5
9emb|AL645739.9| Mouse DNA sequence from clone RP23-213I10 on chr... 40 5.5
10dbj|AK164241.1| Mus musculus 9 days embryo whole body cDNA, RIKE... 40 5.5
11dbj|AK052289.1| Mus musculus 13 days embryo heart cDNA, RIKEN fu... 40 5.5
12gb|AF332579.1|AF332579 Mus musculus small nuclear ribonucleoprot... 40 5.5
13gb|AC121338.6| Homo sapiens 12 BAC RP11-89H19 (Roswell Park Canc... 40 5.5
14emb|AL161757.4|CNS01RHK Human chromosome 14 DNA sequence BAC R-1... 40 5.5
15gb|U44855.1|SCU44855 Saccharomyces cerevisiae 8-oxoguanine DNA g... 40 5.5
16gb|AC140345.3| Mus musculus BAC clone RP24-66E22 from 13, comple... 40 5.5
17dbj|AP006352.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 5.5
18gb|AC167813.4| Mus musculus BAC clone RP24-233L18 from chromosom... 40 5.5
19emb|AL805925.6| Mouse DNA sequence from clone RP23-210E20 on chr... 40 5.5 
>ref|XM_463868.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2734

 Score =  125 bits (63), Expect = 1e-25
 Identities = 141/167 (84%)
 Strand = Plus / Minus

                                                                        
Query: 243  ctgatgatcagctcaccctatttgtgcacatcaaaattgcctctttcagcccttctttat 302
            ||||| ||||||||||||| |||||||||   |||| ||||||||||| |  |||||| |
Sbjct: 2451 ctgatcatcagctcaccctgtttgtgcacgctaaaactgcctctttcaactgttctttgt 2392

                                                                        
Query: 303  ccaaagacgtctccaccatcacctcttgcacattgtttccataccgcgcaaggaccttat 362
            | || || |||||||||||||||||||| ||||| |||||||| || |||||||  ||||
Sbjct: 2391 ctaatgatgtctccaccatcacctcttggacattatttccatagcgtgcaaggagtttat 2332

                                                           
Query: 363  acttttggccaaccaaagatgccatatatacctggaatgttggagct 409
            | || || |||||||||| ||||||||| ||||| || |||||||||
Sbjct: 2331 atttctgaccaaccaaaggtgccatatacacctgaaaggttggagct 2285
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>dbj|AK105772.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-E12, full
            insert sequence
          Length = 1726

 Score =  125 bits (63), Expect = 1e-25
 Identities = 141/167 (84%)
 Strand = Plus / Minus

                                                                        
Query: 243  ctgatgatcagctcaccctatttgtgcacatcaaaattgcctctttcagcccttctttat 302
            ||||| ||||||||||||| |||||||||   |||| ||||||||||| |  |||||| |
Sbjct: 1464 ctgatcatcagctcaccctgtttgtgcacgctaaaactgcctctttcaactgttctttgt 1405

                                                                        
Query: 303  ccaaagacgtctccaccatcacctcttgcacattgtttccataccgcgcaaggaccttat 362
            | || || |||||||||||||||||||| ||||| |||||||| || |||||||  ||||
Sbjct: 1404 ctaatgatgtctccaccatcacctcttggacattatttccatagcgtgcaaggagtttat 1345

                                                           
Query: 363  acttttggccaaccaaagatgccatatatacctggaatgttggagct 409
            | || || |||||||||| ||||||||| ||||| || |||||||||
Sbjct: 1344 atttctgaccaaccaaaggtgccatatacacctgaaaggttggagct 1298
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>dbj|AK067366.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013106A17, full
            insert sequence
          Length = 2734

 Score =  125 bits (63), Expect = 1e-25
 Identities = 141/167 (84%)
 Strand = Plus / Minus

                                                                        
Query: 243  ctgatgatcagctcaccctatttgtgcacatcaaaattgcctctttcagcccttctttat 302
            ||||| ||||||||||||| |||||||||   |||| ||||||||||| |  |||||| |
Sbjct: 2451 ctgatcatcagctcaccctgtttgtgcacgctaaaactgcctctttcaactgttctttgt 2392

                                                                        
Query: 303  ccaaagacgtctccaccatcacctcttgcacattgtttccataccgcgcaaggaccttat 362
            | || || |||||||||||||||||||| ||||| |||||||| || |||||||  ||||
Sbjct: 2391 ctaatgatgtctccaccatcacctcttggacattatttccatagcgtgcaaggagtttat 2332

                                                           
Query: 363  acttttggccaaccaaagatgccatatatacctggaatgttggagct 409
            | || || |||||||||| ||||||||| ||||| || |||||||||
Sbjct: 2331 atttctgaccaaccaaaggtgccatatacacctgaaaggttggagct 2285
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
              complete sequence
          Length = 35954743

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 71/84 (84%)
 Strand = Plus / Minus

                                                                          
Query: 243    ctgatgatcagctcaccctatttgtgcacatcaaaattgcctctttcagcccttctttat 302
              ||||| ||||||||||||| |||||||||   |||| ||||||||||| |  |||||| |
Sbjct: 824258 ctgatcatcagctcaccctgtttgtgcacgctaaaactgcctctttcaactgttctttgt 824199

                                      
Query: 303    ccaaagacgtctccaccatcacct 326
              | || || ||||||||||||||||
Sbjct: 824198 ctaatgatgtctccaccatcacct 824175
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>dbj|AP004121.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1442_E05
          Length = 162407

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 71/84 (84%)
 Strand = Plus / Minus

                                                                         
Query: 243   ctgatgatcagctcaccctatttgtgcacatcaaaattgcctctttcagcccttctttat 302
             ||||| ||||||||||||| |||||||||   |||| ||||||||||| |  |||||| |
Sbjct: 33466 ctgatcatcagctcaccctgtttgtgcacgctaaaactgcctctttcaactgttctttgt 33407

                                     
Query: 303   ccaaagacgtctccaccatcacct 326
             | || || ||||||||||||||||
Sbjct: 33406 ctaatgatgtctccaccatcacct 33383
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>dbj|AP004867.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0036E06
          Length = 137926

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 71/84 (84%)
 Strand = Plus / Minus

                                                                          
Query: 243    ctgatgatcagctcaccctatttgtgcacatcaaaattgcctctttcagcccttctttat 302
              ||||| ||||||||||||| |||||||||   |||| ||||||||||| |  |||||| |
Sbjct: 102389 ctgatcatcagctcaccctgtttgtgcacgctaaaactgcctctttcaactgttctttgt 102330

                                      
Query: 303    ccaaagacgtctccaccatcacct 326
              | || || ||||||||||||||||
Sbjct: 102329 ctaatgatgtctccaccatcacct 102306
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>gb|AC161176.5| Mus musculus chromosome 5, clone RP24-295A5, complete sequence
          Length = 157001

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 321   tcacctcttgcacattgttt 340
             ||||||||||||||||||||
Sbjct: 73730 tcacctcttgcacattgttt 73749
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>emb|Z46729.1|SC9958 S.cerevisiae chromosome XIII cosmid 9958
          Length = 20951

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 378  aagatgccatatatacctgg 397
            ||||||||||||||||||||
Sbjct: 2280 aagatgccatatatacctgg 2261
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>emb|AL645739.9| Mouse DNA sequence from clone RP23-213I10 on chromosome 11 Contains the
             Trpv3 gene for transient receptor potential cation channel
             subfamily V member 3, the Aspa gene for aspartoacylase
             (aminoacylase) 2, a novel gene, the genes for olfactory
             receptor MOR135-11, 12, 13, 2, 1, three olfactory receptor
             MOR135 pseudogenes and a CpG island, complete sequence
          Length = 208137

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    aaacccagcttctgtctcca 31
             ||||||||||||||||||||
Sbjct: 10520 aaacccagcttctgtctcca 10539
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>dbj|AK164241.1| Mus musculus 9 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:D030031F21 product:hepatocyte
           growth factor, full insert sequence
          Length = 996

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 321 tcacctcttgcacattgttt 340
           ||||||||||||||||||||
Sbjct: 421 tcacctcttgcacattgttt 440
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>dbj|AK052289.1| Mus musculus 13 days embryo heart cDNA, RIKEN full-length enriched
            library, clone:D330021I23 product:hepatocyte growth
            factor, full insert sequence
          Length = 1634

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 321  tcacctcttgcacattgttt 340
            ||||||||||||||||||||
Sbjct: 1571 tcacctcttgcacattgttt 1590
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>gb|AF332579.1|AF332579 Mus musculus small nuclear ribonucleoprotein N (Snrpn) gene, upstream
             reading frame exons U1, 1, 2, and 3
          Length = 80730

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 17    cagcttctgtctccagattc 36
             ||||||||||||||||||||
Sbjct: 48427 cagcttctgtctccagattc 48446
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>gb|AC121338.6| Homo sapiens 12 BAC RP11-89H19 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 58272

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 17    cagcttctgtctccagattc 36
             ||||||||||||||||||||
Sbjct: 22318 cagcttctgtctccagattc 22337
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>emb|AL161757.4|CNS01RHK Human chromosome 14 DNA sequence BAC R-1085N6 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 242832

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 314    tccaccatcacctcttgcacattg 337
              ||||||||||||||| ||||||||
Sbjct: 211605 tccaccatcacctctggcacattg 211582
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>gb|U44855.1|SCU44855 Saccharomyces cerevisiae 8-oxoguanine DNA glycosylase (OGG1) gene,
            complete cds
          Length = 2151

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 378  aagatgccatatatacctgg 397
            ||||||||||||||||||||
Sbjct: 1895 aagatgccatatatacctgg 1876
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>gb|AC140345.3| Mus musculus BAC clone RP24-66E22 from 13, complete sequence
          Length = 238541

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 22     tctgtctccagattcgtaaatcaa 45
              ||||||||||||||| ||||||||
Sbjct: 115503 tctgtctccagattcctaaatcaa 115526
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>dbj|AP006352.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT40O04, TM0348,
             complete sequence
          Length = 105070

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 321   tcacctcttgcacattgttt 340
             ||||||||||||||||||||
Sbjct: 42186 tcacctcttgcacattgttt 42205
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>gb|AC167813.4| Mus musculus BAC clone RP24-233L18 from chromosome 7, complete sequence
          Length = 172485

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 17     cagcttctgtctccagattc 36
              ||||||||||||||||||||
Sbjct: 106541 cagcttctgtctccagattc 106522
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>emb|AL805925.6| Mouse DNA sequence from clone RP23-210E20 on chromosome X, complete
             sequence
          Length = 104244

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 17    cagcttctgtctccagattc 36
             ||||||||||||||||||||
Sbjct: 42337 cagcttctgtctccagattc 42356


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,539,251
Number of Sequences: 3902068
Number of extensions: 3539251
Number of successful extensions: 60372
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60334
Number of HSP's gapped (non-prelim): 38
length of query: 409
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 387
effective length of database: 17,147,199,772
effective search space: 6635966311764
effective search space used: 6635966311764
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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