>ref|XM_470680.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1772

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 68/75 (90%)
 Strand = Plus / Minus

                                                                        
Query: 256  attatattagccgtatggaagatggtcctgtaatagcagcaactttctgagccttctgtg 315
            |||| ||||||||||| |||| ||| ||||||| ||||||||| ||||||||||||||||
Sbjct: 1504 attacattagccgtatagaagctggccctgtaacagcagcaaccttctgagccttctgtg 1445

                           
Query: 316  tttcaaatttataca 330
            |||||||||| ||||
Sbjct: 1444 tttcaaatttgtaca 1430

>dbj|AK073312.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033025K03, full
            insert sequence
          Length = 1873

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 68/75 (90%)
 Strand = Plus / Minus

                                                                        
Query: 256  attatattagccgtatggaagatggtcctgtaatagcagcaactttctgagccttctgtg 315
            |||| ||||||||||| |||| ||| ||||||| ||||||||| ||||||||||||||||
Sbjct: 1616 attacattagccgtatagaagctggccctgtaacagcagcaaccttctgagccttctgtg 1557

                           
Query: 316  tttcaaatttataca 330
            |||||||||| ||||
Sbjct: 1556 tttcaaatttgtaca 1542

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 64/70 (91%)
 Strand = Plus / Minus

                                                                            
Query: 261      attagccgtatggaagatggtcctgtaatagcagcaactttctgagccttctgtgtttca 320
                ||||||||||| |||| ||| ||||||| ||||||||| |||||||||||||||||||||
Sbjct: 14512262 attagccgtatagaagctggccctgtaacagcagcaaccttctgagccttctgtgtttca 14512203

                          
Query: 321      aatttataca 330
                ||||| ||||
Sbjct: 14512202 aatttgtaca 14512193

>gb|AC084765.9| Oryza sativa chromosome 3 BAC OSJNBa0090L05 genomic sequence, complete
              sequence
          Length = 147130

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 64/70 (91%)
 Strand = Plus / Plus

                                                                          
Query: 261    attagccgtatggaagatggtcctgtaatagcagcaactttctgagccttctgtgtttca 320
              ||||||||||| |||| ||| ||||||| ||||||||| |||||||||||||||||||||
Sbjct: 145446 attagccgtatagaagctggccctgtaacagcagcaaccttctgagccttctgtgtttca 145505

                        
Query: 321    aatttataca 330
              ||||| ||||
Sbjct: 145506 aatttgtaca 145515

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 64/70 (91%)
 Strand = Plus / Minus

                                                                            
Query: 261      attagccgtatggaagatggtcctgtaatagcagcaactttctgagccttctgtgtttca 320
                ||||||||||| |||| ||| ||||||| ||||||||| |||||||||||||||||||||
Sbjct: 14507237 attagccgtatagaagctggccctgtaacagcagcaaccttctgagccttctgtgtttca 14507178

                          
Query: 321      aatttataca 330
                ||||| ||||
Sbjct: 14507177 aatttgtaca 14507168

>gb|AC087220.9| Oryza sativa chromosome 3 BAC OSJNBb0097F01 genomic sequence, complete
             sequence
          Length = 135594

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 64/70 (91%)
 Strand = Plus / Plus

                                                                         
Query: 261   attagccgtatggaagatggtcctgtaatagcagcaactttctgagccttctgtgtttca 320
             ||||||||||| |||| ||| ||||||| ||||||||| |||||||||||||||||||||
Sbjct: 29119 attagccgtatagaagctggccctgtaacagcagcaaccttctgagccttctgtgtttca 29178

                       
Query: 321   aatttataca 330
             ||||| ||||
Sbjct: 29179 aatttgtaca 29188

>gb|AY109765.1| Zea mays CL27844_1 mRNA sequence
          Length = 1093

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 62/70 (88%)
 Strand = Plus / Plus

                                                                       
Query: 261 attagccgtatggaagatggtcctgtaatagcagcaactttctgagccttctgtgtttca 320
           ||||| || |||||||| ||||| |||| |||||||||||||||||||||||| ||||| 
Sbjct: 207 attagtcgaatggaagaaggtccagtaacagcagcaactttctgagccttctgcgtttct 266

                     
Query: 321 aatttataca 330
            |||||||||
Sbjct: 267 gatttataca 276

>gb|AY675259.1| Homo sapiens MCM2 minichromosome maintenance deficient 2, mitotin (S.
            cerevisiae) (MCM2) gene, complete cds
          Length = 27887

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 299  tttctgagccttctgtgtttc 319
            |||||||||||||||||||||
Sbjct: 8047 tttctgagccttctgtgtttc 8067

>emb|CR450710.5| Zebrafish DNA sequence from clone CH211-197O6 in linkage group 2,
              complete sequence
          Length = 201624

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 237    ttgcatatgacacaggacaat 257
              |||||||||||||||||||||
Sbjct: 137740 ttgcatatgacacaggacaat 137760

>gb|AC023593.14| Homo sapiens 3 BAC RP11-427I6 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 189757

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 299    tttctgagccttctgtgtttc 319
              |||||||||||||||||||||
Sbjct: 177068 tttctgagccttctgtgtttc 177048

>gb|AC120841.7| Mus musculus chromosome 8, clone RP24-553L18, complete sequence
          Length = 143963

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 100   actgcttccagagaatggga 119
             ||||||||||||||||||||
Sbjct: 96639 actgcttccagagaatggga 96620

>gb|AC139884.8| Mus musculus chromosome 6, clone RP23-343E20, complete sequence
          Length = 227769

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 182   actctggactatctgtcttc 201
             ||||||||||||||||||||
Sbjct: 38328 actctggactatctgtcttc 38347

>gb|AC004079.1| Homo sapiens PAC clone RP1-167F23 from 7, complete sequence
          Length = 102717

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 40    ttaaggtaacacaaaatcat 59
             ||||||||||||||||||||
Sbjct: 21035 ttaaggtaacacaaaatcat 21016

>emb|AJ965256.1| Dehalococcoides sp. CBDB1 complete genome
          Length = 1395502

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 427    ctacttttttgaaatattca 446
              ||||||||||||||||||||
Sbjct: 485357 ctacttttttgaaatattca 485338

>gb|AC146102.2| Pan troglodytes BAC clone RP43-21L13 from 7, complete sequence
          Length = 191971

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 40    ttaaggtaacacaaaatcat 59
             ||||||||||||||||||||
Sbjct: 44535 ttaaggtaacacaaaatcat 44516

>gb|AC129590.4| Mus musculus BAC clone RP24-428B12 from chromosome 14, complete sequence
          Length = 180177

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 189    actatctgtcttcaaggctt 208
              ||||||||||||||||||||
Sbjct: 121590 actatctgtcttcaaggctt 121571

>gb|AC125537.4| Mus musculus BAC clone RP24-165M1 from chromosome 12, complete sequence
          Length = 167744

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 192   atctgtcttcaaggcttcaa 211
             ||||||||||||||||||||
Sbjct: 63087 atctgtcttcaaggcttcaa 63106

>gb|AC124201.4| Mus musculus BAC clone RP23-329B24 from chromosome 8, complete sequence
          Length = 234158

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 100    actgcttccagagaatggga 119
              ||||||||||||||||||||
Sbjct: 204757 actgcttccagagaatggga 204776

>emb|CR936538.5| Wallaby DNA sequence from clone MEKBa-43B7, complete sequence
          Length = 115930

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 229   gaaatatgttgcatatgaca 248
             ||||||||||||||||||||
Sbjct: 93915 gaaatatgttgcatatgaca 93896

>gb|AC142285.1| Pan troglodytes BAC clone RP43-169B4 from 7, complete sequence
          Length = 170237

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 40    ttaaggtaacacaaaatcat 59
             ||||||||||||||||||||
Sbjct: 64434 ttaaggtaacacaaaatcat 64415

>emb|Z80232.1|HS463A9 Human DNA sequence from clone RP3-463A9 on chromosome X Contains part
             of the COVA1 gene for cytosolic ovarian carcinoma antigen
             1, complete sequence
          Length = 101196

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 309   ttctgtgtttcaaatttata 328
             ||||||||||||||||||||
Sbjct: 37281 ttctgtgtttcaaatttata 37262

>emb|AL356053.14| Human DNA sequence from clone RP11-453G10 on chromosome 10 Contains
             part of a novel gene (FLJ13031) (FLJ40349), complete
             sequence
          Length = 176355

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 309   ttctgtgtttcaaatttata 328
             ||||||||||||||||||||
Sbjct: 42892 ttctgtgtttcaaatttata 42873

>emb|AL445565.1|MPULM03 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 3/3
          Length = 315079

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 423  tgaactacttttttgaaata 442
            ||||||||||||||||||||
Sbjct: 6100 tgaactacttttttgaaata 6119

>gb|AC177809.2| Pan troglodytes BAC clone CH251-550E5 from chromosome 7, complete
              sequence
          Length = 180443

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 40     ttaaggtaacacaaaatcat 59
              ||||||||||||||||||||
Sbjct: 111187 ttaaggtaacacaaaatcat 111168

>gb|U23947.2|U23947 Mycoplasma pulmonis variable surface antigen locus, complete
           sequence
          Length = 21251

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 423 tgaactacttttttgaaata 442
           ||||||||||||||||||||
Sbjct: 727 tgaactacttttttgaaata 708

>emb|AL355540.12| Human DNA sequence from clone RP5-1104A8 on chromosome 1. Contains part
             of a novel gene, ESTs, STSs and GSSs, complete sequence
          Length = 120219

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 309   ttctgtgtttcaaatttata 328
             ||||||||||||||||||||
Sbjct: 27818 ttctgtgtttcaaatttata 27837


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,492,495
Number of Sequences: 3902068
Number of extensions: 3492495
Number of successful extensions: 59982
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59896
Number of HSP's gapped (non-prelim): 86
length of query: 462
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 440
effective length of database: 17,147,199,772
effective search space: 7544767899680
effective search space used: 7544767899680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)