ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags27f10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RS6B_ARATH (P51430) 40S ribosomal protein S6-2 95 1e-19
2RS6A_ARATH (O48549) 40S ribosomal protein S6-1 94 4e-19
3RS6_ASPOF (Q9M3V8) 40S ribosomal protein S6 93 5e-19
4RS6_TOBAC (P29345) 40S ribosomal protein S6 (Fragment) 82 1e-15
5RS6_RAT (P62755) 40S ribosomal protein S6 65 2e-10
6RS6_MOUSE (P62754) 40S ribosomal protein S6 (Phosphoprotein NP33) 65 2e-10
7RS6_HUMAN (P62753) 40S ribosomal protein S6 (Phosphoprotein NP33) 65 2e-10
8RS6_CHICK (P47838) 40S ribosomal protein S6 64 4e-10
9RS6_ICTPU (Q90YR8) 40S ribosomal protein S6 63 5e-10
10RS6_ONCMY (Q9YGF2) 40S ribosomal protein S6 60 4e-09
11RS6_XENLA (P39017) 40S ribosomal protein S6 60 6e-09
12RS6_DEBHA (Q6BXH8) 40S ribosomal protein S6 57 4e-08
13RS6_MANSE (Q94624) 40S ribosomal protein S6 55 2e-07
14RS6_APLCA (Q9BMX5) 40S ribosomal protein S6 54 2e-07
15RS6A_SCHPO (P05752) 40S ribosomal protein S6-A 53 7e-07
16RS6_SPOFR (Q95V32) 40S ribosomal protein S6 52 2e-06
17RS6_DROME (P29327) 40S ribosomal protein S6 51 2e-06
18RS6_YARLI (Q6C169) 40S ribosomal protein S6 51 2e-06
19RS6B_SCHPO (Q9C0Z7) 40S ribosomal protein S6-B 51 3e-06
20RS6_KLULA (Q6CM04) 40S ribosomal protein S6 50 4e-06
21RS6_CANGA (Q6FJH3) 40S ribosomal protein S6 50 4e-06
22RS6_ASHGO (Q74ZK3) 40S ribosomal protein S6 50 4e-06
23RS6_YEAST (P02365) 40S ribosomal protein S6 (S10) (YS4) (RP9) 50 5e-06
24RS6_BRAFL (O01727) 40S ribosomal protein S6 48 2e-05
25RS6_KLUMA (P41798) 40S ribosomal protein S6 (Ribosomal protein S10) 46 9e-05
26RS6_AEDAE (Q9U761) 40S ribosomal protein S6 46 9e-05
27RS6_AEDAL (Q9U762) 40S ribosomal protein S6 45 1e-04
28RS6_CAEEL (Q9NEN6) 40S ribosomal protein S6 39 0.008
29RS6_LEIMA (Q9NE83) 40S ribosomal protein S6 35 0.20
30RS6_LEIIN (O44012) 40S ribosomal protein S6 35 0.20
31COX3_CHOCR (P48872) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) ... 30 6.4

>RS6B_ARATH (P51430) 40S ribosomal protein S6-2|
          Length = 249

 Score = 95.1 bits (235), Expect = 1e-19
 Identities = 50/73 (68%), Positives = 55/73 (75%)
 Frame = -2

Query: 574 NKKGKKVSKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDR 395
           NKKGKKVSKAPKIQRLVTPLTLQ                 S+AA+YQKLLA RLKEQRDR
Sbjct: 168 NKKGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKANSDAADYQKLLASRLKEQRDR 227

Query: 394 RSESMAKRRSKLS 356
           RSES+AK+RS+LS
Sbjct: 228 RSESLAKKRSRLS 240



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>RS6A_ARATH (O48549) 40S ribosomal protein S6-1|
          Length = 250

 Score = 93.6 bits (231), Expect = 4e-19
 Identities = 49/73 (67%), Positives = 55/73 (75%)
 Frame = -2

Query: 574 NKKGKKVSKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDR 395
           NKKGK+VSKAPKIQRLVTPLTLQ                 S+AA+YQKLLA RLKEQRDR
Sbjct: 168 NKKGKEVSKAPKIQRLVTPLTLQRKRARIADKKKKIAKANSDAADYQKLLASRLKEQRDR 227

Query: 394 RSESMAKRRSKLS 356
           RSES+AK+RS+LS
Sbjct: 228 RSESLAKKRSRLS 240



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>RS6_ASPOF (Q9M3V8) 40S ribosomal protein S6|
          Length = 251

 Score = 93.2 bits (230), Expect = 5e-19
 Identities = 51/73 (69%), Positives = 54/73 (73%)
 Frame = -2

Query: 574 NKKGKKVSKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDR 395
           NKKGK  SKAPKIQRLVTPLTLQ                KSEAAEYQKLLA RLKEQRDR
Sbjct: 168 NKKGKTCSKAPKIQRLVTPLTLQRKRARIAEKKKRVAKAKSEAAEYQKLLASRLKEQRDR 227

Query: 394 RSESMAKRRSKLS 356
           RSES+AK+RS+LS
Sbjct: 228 RSESLAKKRSRLS 240



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>RS6_TOBAC (P29345) 40S ribosomal protein S6 (Fragment)|
          Length = 199

 Score = 81.6 bits (200), Expect = 1e-15
 Identities = 45/68 (66%), Positives = 50/68 (73%)
 Frame = -2

Query: 559 KVSKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESM 380
           K SKAPKIQRLVTPLTLQ                KSEAAEYQKLLA RLKEQR++RSES+
Sbjct: 123 KGSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQREKRSESL 182

Query: 379 AKRRSKLS 356
           AK+RS+LS
Sbjct: 183 AKKRSRLS 190



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>RS6_RAT (P62755) 40S ribosomal protein S6|
          Length = 249

 Score = 64.7 bits (156), Expect = 2e-10
 Identities = 37/70 (52%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
 Frame = -2

Query: 574 NKKGKKV-SKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRD 398
           NK+GKK  +KAPKIQRLVTP  LQ                K EAAEY KLLA+R+KE ++
Sbjct: 163 NKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKE 222

Query: 397 RRSESMAKRR 368
           +R E +AKRR
Sbjct: 223 KRQEQIAKRR 232



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>RS6_MOUSE (P62754) 40S ribosomal protein S6 (Phosphoprotein NP33)|
          Length = 249

 Score = 64.7 bits (156), Expect = 2e-10
 Identities = 37/70 (52%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
 Frame = -2

Query: 574 NKKGKKV-SKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRD 398
           NK+GKK  +KAPKIQRLVTP  LQ                K EAAEY KLLA+R+KE ++
Sbjct: 163 NKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKE 222

Query: 397 RRSESMAKRR 368
           +R E +AKRR
Sbjct: 223 KRQEQIAKRR 232



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>RS6_HUMAN (P62753) 40S ribosomal protein S6 (Phosphoprotein NP33)|
          Length = 249

 Score = 64.7 bits (156), Expect = 2e-10
 Identities = 37/70 (52%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
 Frame = -2

Query: 574 NKKGKKV-SKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRD 398
           NK+GKK  +KAPKIQRLVTP  LQ                K EAAEY KLLA+R+KE ++
Sbjct: 163 NKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKE 222

Query: 397 RRSESMAKRR 368
           +R E +AKRR
Sbjct: 223 KRQEQIAKRR 232



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>RS6_CHICK (P47838) 40S ribosomal protein S6|
          Length = 249

 Score = 63.5 bits (153), Expect = 4e-10
 Identities = 36/70 (51%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
 Frame = -2

Query: 574 NKKGKKV-SKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRD 398
           NK+GKK  +KAPKIQRLVTP  LQ                K EAA+Y KLLA+R+KE ++
Sbjct: 163 NKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTQKNKEEAADYAKLLAKRMKEAKE 222

Query: 397 RRSESMAKRR 368
           +R E +AKRR
Sbjct: 223 KRQEQIAKRR 232



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>RS6_ICTPU (Q90YR8) 40S ribosomal protein S6|
          Length = 249

 Score = 63.2 bits (152), Expect = 5e-10
 Identities = 37/69 (53%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
 Frame = -2

Query: 571 KKGKKV-SKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDR 395
           K+GKK  +KAPKIQRLVTP  LQ                K EAAEY KLLA+RLKE +++
Sbjct: 164 KEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKRQRTQKNKDEAAEYAKLLAKRLKEAKEK 223

Query: 394 RSESMAKRR 368
           R E +AKRR
Sbjct: 224 RQEKIAKRR 232



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>RS6_ONCMY (Q9YGF2) 40S ribosomal protein S6|
          Length = 249

 Score = 60.1 bits (144), Expect = 4e-09
 Identities = 34/69 (49%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
 Frame = -2

Query: 571 KKGKKV-SKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDR 395
           K+GKK  +KAP+IQRLVTP  LQ                K EA+EY KLLA+R+KE +++
Sbjct: 164 KEGKKPRTKAPRIQRLVTPRVLQHKRRRIALKKQRTQKNKEEASEYAKLLAKRMKEAKEK 223

Query: 394 RSESMAKRR 368
           R E +AKRR
Sbjct: 224 RQEQIAKRR 232



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>RS6_XENLA (P39017) 40S ribosomal protein S6|
          Length = 249

 Score = 59.7 bits (143), Expect = 6e-09
 Identities = 35/69 (50%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
 Frame = -2

Query: 571 KKGKKV-SKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDR 395
           K+GKK  +KAPKIQRLVTP  LQ                K EA+EY KLLA+R KE +++
Sbjct: 164 KEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTQKNKEEASEYAKLLAKRSKEAKEK 223

Query: 394 RSESMAKRR 368
           R E +AKRR
Sbjct: 224 RQEQIAKRR 232



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>RS6_DEBHA (Q6BXH8) 40S ribosomal protein S6|
          Length = 236

 Score = 57.0 bits (136), Expect = 4e-08
 Identities = 33/71 (46%), Positives = 40/71 (56%)
 Frame = -2

Query: 571 KKGKKVSKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRR 392
           K  KK +KAPKIQRLVTP TLQ                +  AAEY +LLAQRL E++  R
Sbjct: 164 KGDKKYTKAPKIQRLVTPQTLQRKRALKAQKVKNAQQQRDAAAEYAQLLAQRLHERKAER 223

Query: 391 SESMAKRRSKL 359
           +E   +R S L
Sbjct: 224 AEIKKRRASSL 234



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>RS6_MANSE (Q94624) 40S ribosomal protein S6|
          Length = 253

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 34/73 (46%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
 Frame = -2

Query: 571 KKGKKVSK----APKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQ 404
           K+GK+ +K    APKIQRLVTP+ LQ                KS  A+Y KLLAQR KE 
Sbjct: 165 KEGKENAKPRYKAPKIQRLVTPVVLQRRRHRLALKKKRLAKRKSAEADYAKLLAQRKKES 224

Query: 403 RDRRSESMAKRRS 365
           + RR E + +RRS
Sbjct: 225 KVRRQEEIKRRRS 237



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>RS6_APLCA (Q9BMX5) 40S ribosomal protein S6|
          Length = 247

 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 33/72 (45%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
 Frame = -2

Query: 571 KKGKKV-SKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDR 395
           + GKK  SKAPKIQRLVTP+ LQ                + + AEY KLLAQR+KE ++R
Sbjct: 165 RDGKKAKSKAPKIQRLVTPVVLQRKRARMALKKKRVTKKREDHAEYTKLLAQRMKEAKER 224

Query: 394 RSE-SMAKRRSK 362
           + E   +  RSK
Sbjct: 225 KMERKRSNSRSK 236



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>RS6A_SCHPO (P05752) 40S ribosomal protein S6-A|
          Length = 239

 Score = 52.8 bits (125), Expect = 7e-07
 Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
 Frame = -2

Query: 571 KKGKK-VSKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDR 395
           K+GKK  +KAPKIQRLVTP TLQ                + EAAE+ +L+A+R+ E + +
Sbjct: 166 KEGKKPYTKAPKIQRLVTPRTLQHKRHRFALKRRQAEKNREEAAEFAQLMAKRVAEAKQK 225

Query: 394 RSESMAKRRSKL 359
           R    A+R S L
Sbjct: 226 REVVKARRASSL 237



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>RS6_SPOFR (Q95V32) 40S ribosomal protein S6|
          Length = 253

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 32/73 (43%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
 Frame = -2

Query: 571 KKGKKVSK----APKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQ 404
           K+GK+ +K    APKIQRLVTP+ LQ                K    +Y KLLAQR KE 
Sbjct: 165 KEGKENAKPRYKAPKIQRLVTPVVLQRRRHRLALKKKRLAKRKQSENDYAKLLAQRKKES 224

Query: 403 RDRRSESMAKRRS 365
           + RR E + +RRS
Sbjct: 225 KVRRQEELKRRRS 237



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>RS6_DROME (P29327) 40S ribosomal protein S6|
          Length = 248

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 27/68 (39%), Positives = 37/68 (54%)
 Frame = -2

Query: 562 KKVSKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSES 383
           K  SKAPKIQRL+TP+ LQ                K  +A+Y KLL QR KE + +R E+
Sbjct: 169 KATSKAPKIQRLITPVVLQRKHRRIALKKKRQIASKEASADYAKLLVQRKKESKAKREEA 228

Query: 382 MAKRRSKL 359
             +R + +
Sbjct: 229 KRRRSASI 236



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>RS6_YARLI (Q6C169) 40S ribosomal protein S6|
          Length = 242

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 28/71 (39%), Positives = 38/71 (53%)
 Frame = -2

Query: 571 KKGKKVSKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRR 392
           K GK  +KAPKIQRL+TP  L                 K  AAEY +LLA+R+ E++  +
Sbjct: 165 KSGKTYTKAPKIQRLITPRRLAHKAQLREKKVKAIQASKDAAAEYAQLLAKRVAEKKSEK 224

Query: 391 SESMAKRRSKL 359
           +E   +R S L
Sbjct: 225 AEEKKRRASSL 235



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>RS6B_SCHPO (Q9C0Z7) 40S ribosomal protein S6-B|
          Length = 239

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
 Frame = -2

Query: 571 KKGKK-VSKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDR 395
           K+GKK  +KAPKIQRLVTP TLQ                + EAAE+ +L+A+R+ E + +
Sbjct: 166 KEGKKPYTKAPKIQRLVTPRTLQHKRHRFALKRRQAEKNREEAAEFAQLMAKRVAEAKQK 225

Query: 394 RSESMAKRRSKL 359
           +    A+R S +
Sbjct: 226 KEVVKARRASSM 237



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>RS6_KLULA (Q6CM04) 40S ribosomal protein S6|
          Length = 236

 Score = 50.4 bits (119), Expect = 4e-06
 Identities = 29/71 (40%), Positives = 38/71 (53%)
 Frame = -2

Query: 571 KKGKKVSKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRR 392
           K  K  +KAPKIQRLVTP  LQ                +  AAEY +LLA+RL E++  +
Sbjct: 164 KGDKSYTKAPKIQRLVTPQRLQRKRQQKSLKIKNAQAQREAAAEYAQLLAKRLSERKAEK 223

Query: 391 SESMAKRRSKL 359
           +E   +R S L
Sbjct: 224 AEVRKRRASSL 234



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>RS6_CANGA (Q6FJH3) 40S ribosomal protein S6|
          Length = 236

 Score = 50.4 bits (119), Expect = 4e-06
 Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
 Frame = -2

Query: 568 KGKKV-SKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRR 392
           KG+K  +KAPKIQRLVTP  LQ                +  AAEY +LLA+RL E++  +
Sbjct: 164 KGEKTYTKAPKIQRLVTPQRLQRKRYQRNLKVRNAQAQREAAAEYAQLLAKRLAERKAEK 223

Query: 391 SESMAKRRSKL 359
           +E+  +R S L
Sbjct: 224 AETRKRRASSL 234



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>RS6_ASHGO (Q74ZK3) 40S ribosomal protein S6|
          Length = 236

 Score = 50.4 bits (119), Expect = 4e-06
 Identities = 29/71 (40%), Positives = 38/71 (53%)
 Frame = -2

Query: 571 KKGKKVSKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRR 392
           K  K  +KAPKIQRLVTP  LQ                +  AAEY +LLA+RL E++  +
Sbjct: 164 KGDKTYTKAPKIQRLVTPQRLQRKRHQRALKVRNAQAQREAAAEYAQLLAKRLTEKKAEK 223

Query: 391 SESMAKRRSKL 359
           +E   +R S L
Sbjct: 224 AEERKRRASSL 234



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>RS6_YEAST (P02365) 40S ribosomal protein S6 (S10) (YS4) (RP9)|
          Length = 236

 Score = 50.1 bits (118), Expect = 5e-06
 Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
 Frame = -2

Query: 568 KGKKV-SKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRR 392
           KG+K  +KAPKIQRLVTP  LQ                +  AAEY +LLA+RL E++  +
Sbjct: 164 KGEKTYTKAPKIQRLVTPQRLQRKRHQRALKVRNAQAQREAAAEYAQLLAKRLSERKAEK 223

Query: 391 SESMAKRRSKL 359
           +E   +R S L
Sbjct: 224 AEIRKRRASSL 234



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>RS6_BRAFL (O01727) 40S ribosomal protein S6|
          Length = 244

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 32/70 (45%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
 Frame = -2

Query: 571 KKGKKVS-KAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDR 395
           K+GKK   K PKIQRL+TP  LQ                + E A Y KLLA+R KE+R  
Sbjct: 165 KEGKKQKFKTPKIQRLITPQRLQRKRHMRAVKRRRYAKQREEEATYAKLLAKRKKEER-- 222

Query: 394 RSESMAKRRS 365
             E+ AKRRS
Sbjct: 223 --EAHAKRRS 230



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>RS6_KLUMA (P41798) 40S ribosomal protein S6 (Ribosomal protein S10)|
          Length = 235

 Score = 45.8 bits (107), Expect = 9e-05
 Identities = 31/71 (43%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
 Frame = -2

Query: 568 KGKKV-SKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRR 392
           KG+K  +KAPKIQRLVTP  LQ                +  AAEY +LLA+RL E   R+
Sbjct: 164 KGEKTYTKAPKIQRLVTPQRLQRKRQQKALKIKNAQAQREAAAEYAQLLAKRLAE---RK 220

Query: 391 SESMAKRRSKL 359
           +E   +R S L
Sbjct: 221 AEVRKRRASSL 231



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>RS6_AEDAE (Q9U761) 40S ribosomal protein S6|
          Length = 346

 Score = 45.8 bits (107), Expect = 9e-05
 Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = -2

Query: 571 KKGKKV-SKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDR 395
           K GKK  +KAPKIQRL+TP+ LQ                K   AEY K+L  R +++R R
Sbjct: 165 KDGKKARTKAPKIQRLITPVVLQRKRHRLAIKKRRVESRKEAEAEYMKILHLRRRQERIR 224

Query: 394 RSESMAKRRSKLS 356
           R   ++  R   S
Sbjct: 225 RRSRLSSMRDSRS 237



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>RS6_AEDAL (Q9U762) 40S ribosomal protein S6|
          Length = 349

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = -2

Query: 571 KKGKKV-SKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDR 395
           K GKK  +KAPKIQRL+TP+ LQ                K   AEY K+L  R +++R R
Sbjct: 165 KDGKKPRTKAPKIQRLITPVVLQRKRHRLAIKKRRVESRKEAEAEYMKILHLRRRQERIR 224

Query: 394 RSESMAKRRSKLS 356
           R   ++  R   S
Sbjct: 225 RRSRLSSMRDSRS 237



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>RS6_CAEEL (Q9NEN6) 40S ribosomal protein S6|
          Length = 246

 Score = 39.3 bits (90), Expect = 0.008
 Identities = 24/64 (37%), Positives = 33/64 (51%)
 Frame = -2

Query: 547 APKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRR 368
           APKIQRL+TP  +                 + +AA Y KLLA+  KE+ D +   +A+RR
Sbjct: 173 APKIQRLITPARIARKKYLLRQKRNQKIKMRDDAAAYHKLLAKYSKEEHDAK---IARRR 229

Query: 367 SKLS 356
           S  S
Sbjct: 230 SSAS 233



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>RS6_LEIMA (Q9NE83) 40S ribosomal protein S6|
          Length = 249

 Score = 34.7 bits (78), Expect = 0.20
 Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
 Frame = -2

Query: 571 KKGKKVS-KAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLA--QRLKEQR 401
           K GKK   KAPKIQRL+TP                     +E  EY +L+A  +R   QR
Sbjct: 167 KSGKKDRLKAPKIQRLITPRVKARRAKKAKDAIAKVRASAAERREYLRLIASNRRALRQR 226

Query: 400 DRRSESMAK 374
           D   +   K
Sbjct: 227 DHSKKHTRK 235



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>RS6_LEIIN (O44012) 40S ribosomal protein S6|
          Length = 249

 Score = 34.7 bits (78), Expect = 0.20
 Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
 Frame = -2

Query: 571 KKGKKVS-KAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLA--QRLKEQR 401
           K GKK   KAPKIQRL+TP                     +E  EY +L+A  +R   QR
Sbjct: 167 KSGKKDRLKAPKIQRLITPRVKARRAKKAKDAIAKVRASAAERREYLRLIASNRRALRQR 226

Query: 400 DRRSESMAK 374
           D   +   K
Sbjct: 227 DHSKKHTQK 235



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>COX3_CHOCR (P48872) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide III)
          Length = 272

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 280 ATFSFLGLVIDAVLREHGYFIVGSFVTGVAFLCLYLMQFT 161
           A+       I  V+  H Y + GSF+  ++F CL L+ FT
Sbjct: 28  ASLCAFSCAIGGVMYMHAY-VNGSFILSISFFCLLLVMFT 66


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,830,323
Number of Sequences: 219361
Number of extensions: 1022066
Number of successful extensions: 2768
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 2710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2766
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4872342800
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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