>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 129/158 (81%), Gaps = 2/158 (1%)
 Strand = Plus / Plus

                                                                           
Query: 238     gctcaggccttagggttgcgggatgacnaaactttttggtctaccgggttaccgcttnca 297
               ||||| |||||  |||||| ||||||  || |||| |||||||||||||    |||| ||
Sbjct: 7403871 gctcaagccttgcggttgccggatgatgaacctttctggtctaccgggtccttgcttcca 7403930

                                                                           
Query: 298     accagatctctataacgctgctcccagtcatccagcttcccgttcgaaatgtcaagaatg 357
               ||||  ||||| |||||||| ||||||||||| ||||||||||| || ||||| || |||
Sbjct: 7403931 accaagtctctgtaacgctgttcccagtcatctagcttcccgtttgatatgtc-agcatg 7403989

                                                     
Query: 358     aatcgccctnctgaattccttttaccacaaaaaagtac 395
               ||| ||||| | | || |||||||| || |||||||||
Sbjct: 7403990 aatggcccttc-ggatgccttttacaaccaaaaagtac 7404026

>gb|AC136136.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0071C04, from chromosome 3, complete sequence
          Length = 126078

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 129/158 (81%), Gaps = 2/158 (1%)
 Strand = Plus / Plus

                                                                         
Query: 238   gctcaggccttagggttgcgggatgacnaaactttttggtctaccgggttaccgcttnca 297
             ||||| |||||  |||||| ||||||  || |||| |||||||||||||    |||| ||
Sbjct: 42426 gctcaagccttgcggttgccggatgatgaacctttctggtctaccgggtccttgcttcca 42485

                                                                         
Query: 298   accagatctctataacgctgctcccagtcatccagcttcccgttcgaaatgtcaagaatg 357
             ||||  ||||| |||||||| ||||||||||| ||||||||||| || ||||| || |||
Sbjct: 42486 accaagtctctgtaacgctgttcccagtcatctagcttcccgtttgatatgtc-agcatg 42544

                                                   
Query: 358   aatcgccctnctgaattccttttaccacaaaaaagtac 395
             ||| ||||| | | || |||||||| || |||||||||
Sbjct: 42545 aatggcccttc-ggatgccttttacaaccaaaaagtac 42581

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 129/158 (81%), Gaps = 2/158 (1%)
 Strand = Plus / Plus

                                                                           
Query: 238     gctcaggccttagggttgcgggatgacnaaactttttggtctaccgggttaccgcttnca 297
               ||||| |||||  |||||| ||||||  || |||| |||||||||||||    |||| ||
Sbjct: 7401706 gctcaagccttgcggttgccggatgatgaacctttctggtctaccgggtccttgcttcca 7401765

                                                                           
Query: 298     accagatctctataacgctgctcccagtcatccagcttcccgttcgaaatgtcaagaatg 357
               ||||  ||||| |||||||| ||||||||||| ||||||||||| || ||||| || |||
Sbjct: 7401766 accaagtctctgtaacgctgttcccagtcatctagcttcccgtttgatatgtc-agcatg 7401824

                                                     
Query: 358     aatcgccctnctgaattccttttaccacaaaaaagtac 395
               ||| ||||| | | || |||||||| || |||||||||
Sbjct: 7401825 aatggcccttc-ggatgccttttacaaccaaaaagtac 7401861

>dbj|AK099032.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013128A13, full
            insert sequence
          Length = 1321

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 129/158 (81%), Gaps = 2/158 (1%)
 Strand = Plus / Minus

                                                                        
Query: 238  gctcaggccttagggttgcgggatgacnaaactttttggtctaccgggttaccgcttnca 297
            ||||| |||||  |||||| ||||||  || |||| |||||||||||||    |||| ||
Sbjct: 1115 gctcaagccttgcggttgccggatgatgaacctttctggtctaccgggtccttgcttcca 1056

                                                                        
Query: 298  accagatctctataacgctgctcccagtcatccagcttcccgttcgaaatgtcaagaatg 357
            ||||  ||||| |||||||| ||||||||||| ||||||||||| || ||||| || |||
Sbjct: 1055 accaagtctctgtaacgctgttcccagtcatctagcttcccgtttgatatgtc-agcatg 997

                                                  
Query: 358  aatcgccctnctgaattccttttaccacaaaaaagtac 395
            ||| ||||| | | || |||||||| || |||||||||
Sbjct: 996  aatggcccttc-ggatgccttttacaaccaaaaagtac 960

>dbj|AK058676.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-H08, full
            insert sequence
          Length = 1406

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 129/158 (81%), Gaps = 2/158 (1%)
 Strand = Plus / Minus

                                                                        
Query: 238  gctcaggccttagggttgcgggatgacnaaactttttggtctaccgggttaccgcttnca 297
            ||||| |||||  |||||| ||||||  || |||| |||||||||||||    |||| ||
Sbjct: 1192 gctcaagccttgcggttgccggatgatgaacctttctggtctaccgggtccttgcttcca 1133

                                                                        
Query: 298  accagatctctataacgctgctcccagtcatccagcttcccgttcgaaatgtcaagaatg 357
            ||||  ||||| |||||||| ||||||||||| ||||||||||| || ||||| || |||
Sbjct: 1132 accaagtctctgtaacgctgttcccagtcatctagcttcccgtttgatatgtc-agcatg 1074

                                                  
Query: 358  aatcgccctnctgaattccttttaccacaaaaaagtac 395
            ||| ||||| | | || |||||||| || |||||||||
Sbjct: 1073 aatggcccttc-ggatgccttttacaaccaaaaagtac 1037

>emb|AJ245968.2|ZMA245968 Zea mays mRNA for Toc34-1 protein (toc34A gene)
          Length = 1233

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 310 taacgctgctcccagtcatccagcttccc 338
           |||||||||||||||||||||| ||||||
Sbjct: 997 taacgctgctcccagtcatccaccttccc 969

>gb|AY107292.1| Zea mays PCO067487 mRNA sequence
          Length = 1391

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 310  taacgctgctcccagtcatccagcttccc 338
            |||||||||||||||||||||| ||||||
Sbjct: 1086 taacgctgctcccagtcatccaccttccc 1058

>emb|AJ271049.1|ZMA271049 Zea mays mRNA for Toc34-2 protein (toc34B gene)
          Length = 1313

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 310  taacgctgctcccagtcatccagcttcccgtt 341
            |||||||||||||||||||| | |||||||||
Sbjct: 1043 taacgctgctcccagtcatctaccttcccgtt 1012

>emb|AL353141.13| Human DNA sequence from clone RP11-58C3 on chromosome 9 Contains part
             of the PAPPA gene for pregnancy-associated plasma protein
             A and a novel gene, complete sequence
          Length = 114455

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 369   tgaattccttttaccacaaaaaagta 394
             |||||||||||||| |||||||||||
Sbjct: 74729 tgaattccttttactacaaaaaagta 74704

>gb|AC091602.6| Homo sapiens BAC clone RP11-655M19 from 4, complete sequence
          Length = 189458

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 33    acaataacatttgcaaaattgc 54
             ||||||||||||||||||||||
Sbjct: 71550 acaataacatttgcaaaattgc 71571

>dbj|AP006256.1| Homo sapiens genomic DNA, chromosome 9, clone:RP11-433N8, complete
              sequence
          Length = 198664

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 369    tgaattccttttaccacaaaaaagta 394
              |||||||||||||| |||||||||||
Sbjct: 109951 tgaattccttttactacaaaaaagta 109926

>dbj|AB020878.1| Homo sapiens genomic DNA of 9q32 anti-oncogene of flat epitherium
             cancer , segment 10/10
          Length = 110525

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 369   tgaattccttttaccacaaaaaagta 394
             |||||||||||||| |||||||||||
Sbjct: 88274 tgaattccttttactacaaaaaagta 88249

>dbj|AP005014.3| Homo sapiens genomic DNA, chromosome 11 clone:RP13-259F12, complete
             sequence
          Length = 167444

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 170   aacaaaagaacagcacaggaa 190
             |||||||||||||||||||||
Sbjct: 37484 aacaaaagaacagcacaggaa 37464

>emb|BX004827.18| Human DNA sequence from clone RP13-391G2 on chromosome X Contains the
             SHOX gene for short stature homeobox and seven CpG
             islands, complete sequence
          Length = 119555

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    aataacatttgcaaaattgc 54
             ||||||||||||||||||||
Sbjct: 47868 aataacatttgcaaaattgc 47849

>emb|AL732314.18| Human DNA sequence from clone RP13-465B17 on chromosome X Contains the 5'
              end of the gene for protein phosphatase 2A 48 kDa
              regulatory subunit (PR48), a fatty acid binding protein 5
              (psoriasis-associated) (FABP5) pseudogene, a pseudogene
              similar to part of keratin 18 (KRT18) and nine CpG islands,
              complete sequence
          Length = 218723

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 35     aataacatttgcaaaattgc 54
              ||||||||||||||||||||
Sbjct: 213413 aataacatttgcaaaattgc 213394

>gb|AC099765.1| Caenorhabditis briggsae cosmid CB031I14, complete sequence
          Length = 94665

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 165  ggagcaacaaaagaacagca 184
            ||||||||||||||||||||
Sbjct: 5473 ggagcaacaaaagaacagca 5454

>gb|AC137591.1| Homo sapiens chromosome X clone XX-B6cos map Xp22-PAR, complete
            sequence
          Length = 32799

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 35   aataacatttgcaaaattgc 54
            ||||||||||||||||||||
Sbjct: 1150 aataacatttgcaaaattgc 1131

>gb|AC141644.6| Mus musculus BAC clone RP23-115F21 from chromosome 6, complete sequence
          Length = 187643

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 33    acaataacatttgcaaaatt 52
             ||||||||||||||||||||
Sbjct: 60437 acaataacatttgcaaaatt 60456

>emb|AL833781.5| Mouse DNA sequence from clone RP23-447J12 on chromosome 4, complete
             sequence
          Length = 165700

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 117   ttgtccctgagagctctata 136
             ||||||||||||||||||||
Sbjct: 20041 ttgtccctgagagctctata 20060


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,902,359
Number of Sequences: 3902068
Number of extensions: 2902359
Number of successful extensions: 63040
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62966
Number of HSP's gapped (non-prelim): 69
length of query: 424
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 402
effective length of database: 17,147,199,772
effective search space: 6893174308344
effective search space used: 6893174308344
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)