ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal1g16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NUDH_LEGPL (Q5WSU1) Probable (di)nucleoside polyphosphate hydrol... 28 7.9
2NUDH_LEGPH (Q5ZRK9) Probable (di)nucleoside polyphosphate hydrol... 28 7.9
3NUDH_LEGPA (Q5X115) Probable (di)nucleoside polyphosphate hydrol... 28 7.9
4HIS51_SYNPX (Q7U924) Imidazole glycerol phosphate synthase subun... 28 7.9

>NUDH_LEGPL (Q5WSU1) Probable (di)nucleoside polyphosphate hydrolase (EC|
           3.6.1.-)
          Length = 175

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = +2

Query: 2   GLVPHKKNLQMXNAEPYLESGXRLDAYEILSIRRQWPDHTSPLQK*RYHEEPQI 163
           GL P +  +Q    E + E G      EIL   R+W  +  P Q  R+  EP +
Sbjct: 40  GLAPGETAMQAMYRELHEEVGLDKGDVEILGSTRRWLKYRLPKQYLRHGSEPLV 93



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>NUDH_LEGPH (Q5ZRK9) Probable (di)nucleoside polyphosphate hydrolase (EC|
           3.6.1.-)
          Length = 175

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = +2

Query: 2   GLVPHKKNLQMXNAEPYLESGXRLDAYEILSIRRQWPDHTSPLQK*RYHEEPQI 163
           GL P +  +Q    E + E G      EIL   R+W  +  P Q  R+  EP +
Sbjct: 40  GLAPGETAMQAMYRELHEEVGLDKGDVEILGSTRRWLKYRLPKQYLRHGSEPLV 93



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>NUDH_LEGPA (Q5X115) Probable (di)nucleoside polyphosphate hydrolase (EC|
           3.6.1.-)
          Length = 175

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = +2

Query: 2   GLVPHKKNLQMXNAEPYLESGXRLDAYEILSIRRQWPDHTSPLQK*RYHEEPQI 163
           GL P +  +Q    E + E G      EIL   R+W  +  P Q  R+  EP +
Sbjct: 40  GLAPGETAMQAMYRELHEEVGLDKGDVEILGSTRRWLKYRLPKQYLRHGSEPLV 93



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>HIS51_SYNPX (Q7U924) Imidazole glycerol phosphate synthase subunit hisH1 (EC|
           2.4.2.-) (IGP synthase glutamine amidotransferase
           subunit) (IGP synthase subunit hisH1) (ImGP synthase
           subunit hisH1) (IGPS subunit hisH1)
          Length = 210

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
 Frame = -3

Query: 161 FVVLHGISIFEAVTYDLAIVVGCSESHT-----HPVSXRTLNMVLHXSFASFSCV 12
           F V H  + +    YD  I+   + +H      HP   +T  ++L  +F SFS V
Sbjct: 156 FNVPHDFTTYSYCNYDAKIISSANVNHIMGVQFHPEKSQTNGLILLDNFLSFSNV 210


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,930,199
Number of Sequences: 219361
Number of extensions: 576757
Number of successful extensions: 746
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 80,573,946
effective HSP length: 68
effective length of database: 65,657,398
effective search space used: 1575777552
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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