ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags26p15 |
|---|---|
| Clone Library Name | barley_pub |
>YHJ9_YEAST (P38694) Hypothetical aldehyde dehydrogenase-like protein in| FIL1-VMA10 intergenic region (EC 1.2.1.-) Length = 644 Score = 42.0 bits (97), Expect = 7e-04 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 2/52 (3%) Frame = -2 Query: 421 PYVKTMIPKPIQYPVSENGFA--FQQLLVETLYGISVWDRLQSLVNLLKMIS 272 P+V T IPKP+ YP+ N A F + + Y S W R++SL +L K S Sbjct: 593 PFVSTQIPKPLDYPIRNNAKAWNFVKSFIVGAYTNSTWQRIKSLFSLAKEAS 644
>VL2_HPV58 (P26538) Minor capsid protein L2| Length = 472 Score = 33.1 bits (74), Expect = 0.34 Identities = 15/38 (39%), Positives = 23/38 (60%) Frame = -1 Query: 347 ARRDSVRHQRMGQAAVTRESVKDDLGAEVSYNQEEKPV 234 +RR +VR+ R+GQ A R +GA+V Y Q+ P+ Sbjct: 294 SRRGTVRYSRVGQKATLRTRSGKQIGAKVHYYQDLSPI 331
>VL2_HPV03 (P36744) Minor capsid protein L2| Length = 473 Score = 30.8 bits (68), Expect = 1.7 Identities = 16/42 (38%), Positives = 22/42 (52%) Frame = -1 Query: 347 ARRDSVRHQRMGQAAVTRESVKDDLGAEVSYNQEEKPVSRGE 222 +RR +VR+ R+GQ R LGA V Y Q+ P+ E Sbjct: 293 SRRGTVRYSRVGQKLSMRTRSGKGLGARVHYYQDLSPIGPTE 334
>HS105_CRIGR (Q60446) Heat-shock protein 105 kDa (Heat shock 110 kDa protein)| Length = 858 Score = 30.4 bits (67), Expect = 2.2 Identities = 12/35 (34%), Positives = 20/35 (57%) Frame = +3 Query: 96 LPCPEPDPHQTWHLEDNSQKTSPQAGASSSEQTDG 200 + CP P ++ ++ NSQ+ + +AG QTDG Sbjct: 515 MECPNQKPAESSDVDKNSQQDNSEAGTQPQVQTDG 549
>VL2_HPV33 (P06418) Minor capsid protein L2| Length = 467 Score = 30.0 bits (66), Expect = 2.9 Identities = 13/38 (34%), Positives = 21/38 (55%) Frame = -1 Query: 347 ARRDSVRHQRMGQAAVTRESVKDDLGAEVSYNQEEKPV 234 +RR +VR R+GQ A + +GA + Y Q+ P+ Sbjct: 294 SRRHTVRFSRVGQKATLKTRSGKQIGARIHYYQDLSPI 331
>M3K1_HUMAN (Q13233) Mitogen-activated protein kinase kinase kinase 1 (EC| 2.7.11.25) (MAPK/ERK kinase kinase 1) (MEK kinase 1) (MEKK 1) (Fragment) Length = 1495 Score = 25.8 bits (55), Expect(2) = 3.5 Identities = 11/28 (39%), Positives = 15/28 (53%) Frame = +2 Query: 338 LDEQLLECKPILRDGILNRLGDHCFDVW 421 LDE+ L + DG N+L HC +W Sbjct: 432 LDEESLT---VCEDGCRNKLHHHCMSIW 456 Score = 22.3 bits (46), Expect(2) = 3.5 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = +3 Query: 288 RFTSDCSLSHTLMPYRVSTSSCWNA 362 +F S S SHTL STSS N+ Sbjct: 391 KFVSRMSNSHTLSSSSTSTSSSENS 415
>M3K1_MOUSE (P53349) Mitogen-activated protein kinase kinase kinase 1 (EC| 2.7.11.25) (MAPK/ERK kinase kinase 1) (MEK kinase 1) (MEKK 1) Length = 1493 Score = 25.8 bits (55), Expect(2) = 3.5 Identities = 11/28 (39%), Positives = 15/28 (53%) Frame = +2 Query: 338 LDEQLLECKPILRDGILNRLGDHCFDVW 421 LDE+ L + DG N+L HC +W Sbjct: 446 LDEESLT---VCEDGCRNKLHHHCMSIW 470 Score = 22.3 bits (46), Expect(2) = 3.5 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = +3 Query: 288 RFTSDCSLSHTLMPYRVSTSSCWNA 362 +F S S SHTL STSS N+ Sbjct: 405 KFVSRMSNSHTLSSSSTSTSSSENS 429
>VL2_HPV69 (Q9JH45) Minor capsid protein L2| Length = 467 Score = 29.6 bits (65), Expect = 3.8 Identities = 14/42 (33%), Positives = 22/42 (52%) Frame = -1 Query: 347 ARRDSVRHQRMGQAAVTRESVKDDLGAEVSYNQEEKPVSRGE 222 +RR +VR R+GQ A + +GA+V Y + P+ E Sbjct: 291 SRRGTVRFSRLGQKATLKTRSGKQIGAKVHYYHDISPIHATE 332
>VL2_HPV10 (P36747) Minor capsid protein L2| Length = 470 Score = 29.6 bits (65), Expect = 3.8 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Frame = -1 Query: 404 DPQAYSVSRLGEWVCIPA-AARRDSVRHQRMGQAAVTRESVKDDLGAEVSYNQEEKPVS 231 DP + RL PA +RR +VR R+GQ R +GA V Y Q+ P++ Sbjct: 277 DPDFLDIVRLHR----PALTSRRGTVRFSRLGQKFSMRTRSGKGIGARVHYYQDLSPIA 331
>FILA_HUMAN (P20930) Filaggrin| Length = 4061 Score = 29.3 bits (64), Expect = 4.9 Identities = 20/68 (29%), Positives = 33/68 (48%) Frame = -1 Query: 443 SCRRQVVAIRQNNDPQAYSVSRLGEWVCIPAAARRDSVRHQRMGQAAVTRESVKDDLGAE 264 S RQ +Q+ D +S SR E A++R DS RH ++GQ + + G+ Sbjct: 1863 SVSRQTRNEKQSGDGSRHSGSRHHE-----ASSRADSSRHSQVGQGQSSGPRTSRNQGSS 1917 Query: 263 VSYNQEEK 240 VS + + + Sbjct: 1918 VSQDSDSQ 1925
>VL2_HPV52 (P36763) Minor capsid protein L2| Length = 466 Score = 29.3 bits (64), Expect = 4.9 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = -1 Query: 347 ARRDSVRHQRMGQAAVTRESVKDDLGAEVSYNQEEKPVSRGE 222 +RR +VR R+G A R +GA V Y + P+ E Sbjct: 294 SRRGTVRFSRLGNKATLRTRSGKQIGARVHYYHDISPIQPAE 335
>SAHH3_PONPY (Q5R889) Putative adenosylhomocysteinase 3 (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase 3) (AdoHcyase 3) Length = 508 Score = 28.9 bits (63), Expect = 6.4 Identities = 15/40 (37%), Positives = 22/40 (55%) Frame = -1 Query: 392 YSVSRLGEWVCIPAAARRDSVRHQRMGQAAVTRESVKDDL 273 Y +S+ G+ +C+PA DSV Q+ RES+ D L Sbjct: 241 YQLSKAGK-LCVPAMNVNDSVTKQKFDNLYCCRESILDGL 279
>SAHH2_MOUSE (Q80SW1) Putative adenosylhomocysteinase 2 (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase 2) (AdoHcyase 2) (S-adenosylhomocysteine hydrolase-like 1) (IP3R-binding protein released with inositol 1,4,5-trisphosphate) Length = 530 Score = 28.9 bits (63), Expect = 6.4 Identities = 15/40 (37%), Positives = 22/40 (55%) Frame = -1 Query: 392 YSVSRLGEWVCIPAAARRDSVRHQRMGQAAVTRESVKDDL 273 Y +S+ G+ +C+PA DSV Q+ RES+ D L Sbjct: 263 YQLSKAGK-LCVPAMNVNDSVTKQKFDNLYCCRESILDGL 301
>SAHH2_HUMAN (O43865) Putative adenosylhomocysteinase 2 (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase 2) (AdoHcyase 2) (S-adenosylhomocysteine hydrolase-like 1) (DC-expressed AHCY-like molecule) Length = 530 Score = 28.9 bits (63), Expect = 6.4 Identities = 15/40 (37%), Positives = 22/40 (55%) Frame = -1 Query: 392 YSVSRLGEWVCIPAAARRDSVRHQRMGQAAVTRESVKDDL 273 Y +S+ G+ +C+PA DSV Q+ RES+ D L Sbjct: 263 YQLSKAGK-LCVPAMNVNDSVTKQKFDNLYCCRESILDGL 301
>DML3_ARATH (O49498) DEMETER-like protein 3| Length = 1044 Score = 28.9 bits (63), Expect = 6.4 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = +3 Query: 132 HLEDNSQKTSPQAGASSSEQTDGIKH 209 HL+DNSQ T + +S++ GIKH Sbjct: 30 HLQDNSQTTHKKKEKKNSKEKHGIKH 55
>VL2_HPV53 (P36764) Minor capsid protein L2| Length = 463 Score = 28.9 bits (63), Expect = 6.4 Identities = 14/41 (34%), Positives = 20/41 (48%) Frame = -1 Query: 344 RRDSVRHQRMGQAAVTRESVKDDLGAEVSYNQEEKPVSRGE 222 RR VR R+G A R +GA V Y + P+++ E Sbjct: 290 RRGGVRFSRLGTKATMRTRSGKQIGARVHYYYDVSPITQTE 330
>SAHH3_HUMAN (Q96HN2) Putative adenosylhomocysteinase 3 (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase 3) (AdoHcyase 3) Length = 611 Score = 28.9 bits (63), Expect = 6.4 Identities = 15/40 (37%), Positives = 22/40 (55%) Frame = -1 Query: 392 YSVSRLGEWVCIPAAARRDSVRHQRMGQAAVTRESVKDDL 273 Y +S+ G+ +C+PA DSV Q+ RES+ D L Sbjct: 344 YQLSKAGK-LCVPAMNVNDSVTKQKFDNLYCCRESILDGL 382
>SAHH3_MOUSE (Q68FL4) Putative adenosylhomocysteinase 3 (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase 3) (AdoHcyase 3) Length = 613 Score = 28.9 bits (63), Expect = 6.4 Identities = 15/40 (37%), Positives = 22/40 (55%) Frame = -1 Query: 392 YSVSRLGEWVCIPAAARRDSVRHQRMGQAAVTRESVKDDL 273 Y +S+ G+ +C+PA DSV Q+ RES+ D L Sbjct: 346 YQLSKAGK-LCVPAMNVNDSVTKQKFDNLYCCRESILDGL 384
>MSRB_PSEPK (Q88LQ6) Peptide methionine sulfoxide reductase msrB (EC 1.8.4.6)| Length = 131 Score = 28.9 bits (63), Expect = 6.4 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = +3 Query: 108 EPDPHQTWHLEDNSQKTSPQAGASSSEQTDGIKHCAKCFAP 230 +P+ +Q L+ + P +G +SE+ DGI HC C P Sbjct: 16 DPEQYQVCRLKGTER---PFSGKYNSERRDGIYHCICCGLP 53
>VL2_HPV30 (P36756) Minor capsid protein L2| Length = 463 Score = 28.5 bits (62), Expect = 8.4 Identities = 14/41 (34%), Positives = 19/41 (46%) Frame = -1 Query: 344 RRDSVRHQRMGQAAVTRESVKDDLGAEVSYNQEEKPVSRGE 222 RR VR R+G A R +GA V Y + P++ E Sbjct: 290 RRGGVRFSRLGTKATMRTRSGKQIGARVHYYYDVSPIAHTE 330
>OSTP_MOUSE (P10923) Osteopontin precursor (Bone sialoprotein-1) (Secreted| phosphoprotein 1) (SPP-1) (Minopontin) (Early T-lymphocyte activation 1 protein) (2AR) (Calcium oxalate crystal growth inhibitor protein) Length = 294 Score = 28.5 bits (62), Expect = 8.4 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 3/32 (9%) Frame = +3 Query: 111 PDPHQTWHLEDNSQK---TSPQAGASSSEQTD 197 PDP TW + D SQK +PQ SS E+ D Sbjct: 36 PDPIATWLVPDPSQKQNLLAPQNAVSSEEKDD 67
>VL2_HPV26 (P36754) Minor capsid protein L2| Length = 472 Score = 28.5 bits (62), Expect = 8.4 Identities = 12/38 (31%), Positives = 21/38 (55%) Frame = -1 Query: 347 ARRDSVRHQRMGQAAVTRESVKDDLGAEVSYNQEEKPV 234 +R+ +VR+ R+GQ A + +GA V Y + P+ Sbjct: 291 SRKGTVRYSRLGQKATMKTRSGKQIGATVHYYHDISPI 328 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,663,682 Number of Sequences: 219361 Number of extensions: 1443977 Number of successful extensions: 3854 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 3747 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3849 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2851757076 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
