ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags26p15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_185521.2| Oryza sativa (japonica cultivar-group), mRNA 151 2e-33
2dbj|AK068462.1| Oryza sativa (japonica cultivar-group) cDNA clon... 151 2e-33
3gb|AY109842.1| Zea mays CL53684_1 mRNA sequence 100 8e-18
4dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 90 7e-15
5dbj|AP004316.4| Oryza sativa (japonica cultivar-group) genomic D... 90 7e-15
6dbj|AP003816.2| Oryza sativa (japonica cultivar-group) genomic D... 90 7e-15
7gb|BT019095.1| Zea mays clone Contig694.F mRNA sequence 86 1e-13
8gb|AC161589.2| Mus musculus BAC clone RP24-383M20 from chromosom... 44 0.39
9gb|AC093295.2| Homo sapiens chromosome 5 clone RP11-535A15, comp... 42 1.6
10gb|AC018687.6| Homo sapiens BAC clone RP11-462G22 from 4, comple... 42 1.6
11emb|AL513352.12| Mouse DNA sequence from clone RP23-180L12 on ch... 42 1.6
12gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 6.1
13gb|AC008317.7| Drosophila melanogaster clone BACR08N17, complete... 40 6.1
14ref|XM_414713.1| PREDICTED: Gallus gallus similar to ubinuclein ... 40 6.1
15gb|AC012560.5| Homo sapiens chromosome 10 clone RP11-397I15, com... 40 6.1
16gb|AC149518.2| Xenopus tropicalis clone CH216-59A18, complete se... 40 6.1
17gb|AC012084.9| Homo sapiens 10 BAC RP11-943E22 (Roswell Park Can... 40 6.1
18gb|AC159912.9| Mus musculus 6 BAC RP24-314B1 (Roswell Park Cance... 40 6.1
19gb|AC157101.9| Mus musculus 6 BAC RP24-549J13 (Roswell Park Canc... 40 6.1
20gb|AC092608.2| Homo sapiens BAC clone RP11-154F14 from 4, comple... 40 6.1
21emb|AL731776.7| Mouse DNA sequence from clone RP23-58B9 on chrom... 40 6.1
22ref|XM_560527.1| Anopheles gambiae str. PEST ENSANGP00000027434 ... 40 6.1
23gb|AE003681.5| Drosophila melanogaster chromosome 3R, section 19... 40 6.1
24gb|AC106950.7| Rattus norvegicus BAC CH230-23G8 (Children's Hos... 40 6.1
25gb|AF011927.1|AF011927 Bos indicus tumor necrosis factor alpha (... 40 6.1
26gb|AY067812.1| Schmidtea mediterranea clone H.19.1c(T3) unknown ... 40 6.1 
>ref|NM_185521.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2383

 Score =  151 bits (76), Expect = 2e-33
 Identities = 163/192 (84%)
 Strand = Plus / Minus

                                                                        
Query: 264  ttctgctccgagatcatctttaacagattcacgagtgactgcagcctgtcccatacgctg 323
            |||||||| || ||||||||||||||||| || |||||| |||  |||||||| || || 
Sbjct: 2008 ttctgctctgaaatcatctttaacagattgacaagtgaccgcaatctgtcccacacacta 1949

                                                                        
Query: 324  atgccgtacagagtctcgacgagcagctgctggaatgcaaacccattctccgagacggga 383
            | |||||| ||||| || ||||||| ||  |||||| |||| |||||||| ||||| |||
Sbjct: 1948 aggccgtagagagtttcaacgagcaactcttggaattcaaatccattctcggagacagga 1889

                                                                        
Query: 384  tactgaataggcttggggatcattgttttgacgtatggccaccacctgtcttctacaact 443
            ||||||||||| || |||||||| ||||| || ||||||||||| || ||||||||||||
Sbjct: 1888 tactgaataggttttgggatcatggttttaacatatggccaccatctatcttctacaact 1829

                        
Query: 444  gcctttacaagg 455
            ||||| ||||||
Sbjct: 1828 gccttgacaagg 1817
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>dbj|AK068462.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155B06, full
            insert sequence
          Length = 2383

 Score =  151 bits (76), Expect = 2e-33
 Identities = 163/192 (84%)
 Strand = Plus / Minus

                                                                        
Query: 264  ttctgctccgagatcatctttaacagattcacgagtgactgcagcctgtcccatacgctg 323
            |||||||| || ||||||||||||||||| || |||||| |||  |||||||| || || 
Sbjct: 2008 ttctgctctgaaatcatctttaacagattgacaagtgaccgcaatctgtcccacacacta 1949

                                                                        
Query: 324  atgccgtacagagtctcgacgagcagctgctggaatgcaaacccattctccgagacggga 383
            | |||||| ||||| || ||||||| ||  |||||| |||| |||||||| ||||| |||
Sbjct: 1948 aggccgtagagagtttcaacgagcaactcttggaattcaaatccattctcggagacagga 1889

                                                                        
Query: 384  tactgaataggcttggggatcattgttttgacgtatggccaccacctgtcttctacaact 443
            ||||||||||| || |||||||| ||||| || ||||||||||| || ||||||||||||
Sbjct: 1888 tactgaataggttttgggatcatggttttaacatatggccaccatctatcttctacaact 1829

                        
Query: 444  gcctttacaagg 455
            ||||| ||||||
Sbjct: 1828 gccttgacaagg 1817
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>gb|AY109842.1| Zea mays CL53684_1 mRNA sequence
          Length = 1091

 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 146/178 (82%)
 Strand = Plus / Minus

                                                                       
Query: 278 catctttaacagattcacgagtgactgcagcctgtcccatacgctgatgccgtacagagt 337
           ||||||||  |||||||| || ||| ||| ||||||||| |||||   ||| ||||||||
Sbjct: 784 catctttataagattcacaagggaccgcaacctgtcccacacgctatagccatacagagt 725

                                                                       
Query: 338 ctcgacgagcagctgctggaatgcaaacccattctccgagacgggatactgaataggctt 397
           ||| || |||| |||||||||  |||| |||| ||| |||||||||||||| ||||||||
Sbjct: 724 ctccacaagcaactgctggaactcaaatccatgctctgagacgggatactggataggctt 665

                                                                     
Query: 398 ggggatcattgttttgacgtatggccaccacctgtcttctacaactgcctttacaagg 455
            ||||||| |||| | |  ||||||||| | || ||||||||||| | ||| ||||||
Sbjct: 664 cgggatcactgttctaatatatggccacaatctatcttctacaacagacttcacaagg 607
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 108/129 (83%)
 Strand = Plus / Plus

                                                                            
Query: 264      ttctgctccgagatcatctttaacagattcacgagtgactgcagcctgtcccatacgctg 323
                |||||||| || ||||||||||||||||| || |||||| |||  |||||||| || || 
Sbjct: 29218385 ttctgctctgaaatcatctttaacagattgacaagtgaccgcaatctgtcccacacacta 29218444

                                                                            
Query: 324      atgccgtacagagtctcgacgagcagctgctggaatgcaaacccattctccgagacggga 383
                | |||||| ||||| || ||||||| ||  |||||| |||| |||||||| ||||| |||
Sbjct: 29218445 aggccgtagagagtttcaacgagcaactcttggaattcaaatccattctcggagacagga 29218504

                         
Query: 384      tactgaata 392
                |||||||||
Sbjct: 29218505 tactgaata 29218513



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 62/70 (88%)
 Strand = Plus / Plus

                                                                            
Query: 386      ctgaataggcttggggatcattgttttgacgtatggccaccacctgtcttctacaactgc 445
                ||||||||| || |||||||| ||||| || ||||||||||| || ||||||||||||||
Sbjct: 29218593 ctgaataggttttgggatcatggttttaacatatggccaccatctatcttctacaactgc 29218652

                          
Query: 446      ctttacaagg 455
                ||| ||||||
Sbjct: 29218653 cttgacaagg 29218662
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>dbj|AP004316.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
            clone:P0597G07
          Length = 152928

 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 108/129 (83%)
 Strand = Plus / Plus

                                                                        
Query: 264  ttctgctccgagatcatctttaacagattcacgagtgactgcagcctgtcccatacgctg 323
            |||||||| || ||||||||||||||||| || |||||| |||  |||||||| || || 
Sbjct: 7074 ttctgctctgaaatcatctttaacagattgacaagtgaccgcaatctgtcccacacacta 7133

                                                                        
Query: 324  atgccgtacagagtctcgacgagcagctgctggaatgcaaacccattctccgagacggga 383
            | |||||| ||||| || ||||||| ||  |||||| |||| |||||||| ||||| |||
Sbjct: 7134 aggccgtagagagtttcaacgagcaactcttggaattcaaatccattctcggagacagga 7193

                     
Query: 384  tactgaata 392
            |||||||||
Sbjct: 7194 tactgaata 7202



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 62/70 (88%)
 Strand = Plus / Plus

                                                                        
Query: 386  ctgaataggcttggggatcattgttttgacgtatggccaccacctgtcttctacaactgc 445
            ||||||||| || |||||||| ||||| || ||||||||||| || ||||||||||||||
Sbjct: 7282 ctgaataggttttgggatcatggttttaacatatggccaccatctatcttctacaactgc 7341

                      
Query: 446  ctttacaagg 455
            ||| ||||||
Sbjct: 7342 cttgacaagg 7351
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>dbj|AP003816.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1165_F02
          Length = 125993

 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 108/129 (83%)
 Strand = Plus / Plus

                                                                         
Query: 264   ttctgctccgagatcatctttaacagattcacgagtgactgcagcctgtcccatacgctg 323
             |||||||| || ||||||||||||||||| || |||||| |||  |||||||| || || 
Sbjct: 58459 ttctgctctgaaatcatctttaacagattgacaagtgaccgcaatctgtcccacacacta 58518

                                                                         
Query: 324   atgccgtacagagtctcgacgagcagctgctggaatgcaaacccattctccgagacggga 383
             | |||||| ||||| || ||||||| ||  |||||| |||| |||||||| ||||| |||
Sbjct: 58519 aggccgtagagagtttcaacgagcaactcttggaattcaaatccattctcggagacagga 58578

                      
Query: 384   tactgaata 392
             |||||||||
Sbjct: 58579 tactgaata 58587



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 62/70 (88%)
 Strand = Plus / Plus

                                                                         
Query: 386   ctgaataggcttggggatcattgttttgacgtatggccaccacctgtcttctacaactgc 445
             ||||||||| || |||||||| ||||| || ||||||||||| || ||||||||||||||
Sbjct: 58667 ctgaataggttttgggatcatggttttaacatatggccaccatctatcttctacaactgc 58726

                       
Query: 446   ctttacaagg 455
             ||| ||||||
Sbjct: 58727 cttgacaagg 58736
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>gb|BT019095.1| Zea mays clone Contig694.F mRNA sequence
          Length = 1006

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 146/179 (81%), Gaps = 1/179 (0%)
 Strand = Plus / Minus

                                                                       
Query: 278 catctttaacagattcacgagtgactgcagcctgtccc-atacgctgatgccgtacagag 336
           ||||||||  |||||||| || ||| ||| |||||||| | |||||   ||| |||||||
Sbjct: 679 catctttataagattcacaagggaccgcaacctgtccccacacgctatagccatacagag 620

                                                                       
Query: 337 tctcgacgagcagctgctggaatgcaaacccattctccgagacgggatactgaataggct 396
           |||| || |||| |||||||||  |||| |||| ||| |||||||||||||| |||||||
Sbjct: 619 tctccacaagcaactgctggaactcaaatccatgctctgagacgggatactggataggct 560

                                                                      
Query: 397 tggggatcattgttttgacgtatggccaccacctgtcttctacaactgcctttacaagg 455
           | ||||||| |||| | |  ||||||||| | || ||||||||||| | ||| ||||||
Sbjct: 559 tcgggatcactgttctaatatatggccacaatctatcttctacaacagacttcacaagg 501
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>gb|AC161589.2| Mus musculus BAC clone RP24-383M20 from chromosome 9, complete sequence
          Length = 226186

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 36     aatcttcactttctaggaaaga 57
              ||||||||||||||||||||||
Sbjct: 171414 aatcttcactttctaggaaaga 171435
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>gb|AC093295.2| Homo sapiens chromosome 5 clone RP11-535A15, complete sequence
          Length = 203831

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 240    cttttcctcctggttatagga 260
              |||||||||||||||||||||
Sbjct: 168141 cttttcctcctggttatagga 168121
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>gb|AC018687.6| Homo sapiens BAC clone RP11-462G22 from 4, complete sequence
          Length = 156378

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 75     cgtttcacattcaaataaatgctac 99
              ||||||||||| |||||||||||||
Sbjct: 146795 cgtttcacatttaaataaatgctac 146771
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>emb|AL513352.12| Mouse DNA sequence from clone RP23-180L12 on chromosome 15, complete
              sequence
          Length = 240977

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 146    cagccaaaagactagcccaca 166
              |||||||||||||||||||||
Sbjct: 220533 cagccaaaagactagcccaca 220553
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>gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 1, complete
               sequence
          Length = 2300533

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 187     agcaaactgatgggataaaa 206
               ||||||||||||||||||||
Sbjct: 2157157 agcaaactgatgggataaaa 2157176
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>gb|AC008317.7| Drosophila melanogaster clone BACR08N17, complete sequence
          Length = 169100

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 162   ccacaggcaggagcatcatcatca 185
             ||||||||| ||||||||||||||
Sbjct: 96304 ccacaggcacgagcatcatcatca 96327
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>ref|XM_414713.1| PREDICTED: Gallus gallus similar to ubinuclein (LOC416398), mRNA
          Length = 3520

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 175  catcatcatcagagcaaact 194
            ||||||||||||||||||||
Sbjct: 1709 catcatcatcagagcaaact 1690
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>gb|AC012560.5| Homo sapiens chromosome 10 clone RP11-397I15, complete sequence
          Length = 170917

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 350   ctgctggaatgcaaacccat 369
             ||||||||||||||||||||
Sbjct: 63120 ctgctggaatgcaaacccat 63139
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>gb|AC149518.2| Xenopus tropicalis clone CH216-59A18, complete sequence
          Length = 210140

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 84     ttcaaataaatgctaccttgccct 107
              |||||||||||||| |||||||||
Sbjct: 181389 ttcaaataaatgctcccttgccct 181412
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>gb|AC012084.9| Homo sapiens 10 BAC RP11-943E22 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 167441

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 350   ctgctggaatgcaaacccat 369
             ||||||||||||||||||||
Sbjct: 25348 ctgctggaatgcaaacccat 25329
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>gb|AC159912.9| Mus musculus 6 BAC RP24-314B1 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 178951

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 243    ttcctcctggttataggaga 262
              ||||||||||||||||||||
Sbjct: 148393 ttcctcctggttataggaga 148412
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>gb|AC157101.9| Mus musculus 6 BAC RP24-549J13 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 167974

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 243   ttcctcctggttataggaga 262
             ||||||||||||||||||||
Sbjct: 26494 ttcctcctggttataggaga 26513
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>gb|AC092608.2| Homo sapiens BAC clone RP11-154F14 from 4, complete sequence
          Length = 196952

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 429   ctgtcttctacaactgcctt 448
             ||||||||||||||||||||
Sbjct: 33373 ctgtcttctacaactgcctt 33392
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>emb|AL731776.7| Mouse DNA sequence from clone RP23-58B9 on chromosome X, complete
             sequence
          Length = 237321

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 199   ggataaaacattgtgccaaa 218
             ||||||||||||||||||||
Sbjct: 75526 ggataaaacattgtgccaaa 75507
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>ref|XM_560527.1| Anopheles gambiae str. PEST ENSANGP00000027434
           (ENSANGG00000023688), partial mRNA
          Length = 978

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 105 cctgagcctgatccccacca 124
           ||||||||||||||||||||
Sbjct: 600 cctgagcctgatccccacca 619
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>gb|AE003681.5| Drosophila melanogaster chromosome 3R, section 19 of 118 of the complete
              sequence
          Length = 306650

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 162    ccacaggcaggagcatcatcatca 185
              ||||||||| ||||||||||||||
Sbjct: 201568 ccacaggcacgagcatcatcatca 201545
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>gb|AC106950.7| Rattus norvegicus  BAC CH230-23G8 (Children's Hospital Oakland Research
              Institute Rat (BN/SsNHsd/MCW) BAC library) complete
              sequence
          Length = 254341

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 199    ggataaaacattgtgccaaa 218
              ||||||||||||||||||||
Sbjct: 238295 ggataaaacattgtgccaaa 238314
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>gb|AF011927.1|AF011927 Bos indicus tumor necrosis factor alpha (TNFa) gene, complete cds
          Length = 4349

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 45   tttctaggaaagagcactgg 64
            ||||||||||||||||||||
Sbjct: 4090 tttctaggaaagagcactgg 4109
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>gb|AY067812.1| Schmidtea mediterranea clone H.19.1c(T3) unknown mRNA sequence
          Length = 632

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 191 aactgatgggataaaacatt 210
           ||||||||||||||||||||
Sbjct: 136 aactgatgggataaaacatt 155


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,097,371
Number of Sequences: 3902068
Number of extensions: 4097371
Number of successful extensions: 75954
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75882
Number of HSP's gapped (non-prelim): 72
length of query: 455
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 433
effective length of database: 17,147,199,772
effective search space: 7424737501276
effective search space used: 7424737501276
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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