ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags26p14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL392106.4| Human DNA sequence from clone RP11-563H8 on chro... 42 1.9
2emb|AL138709.19| Human DNA sequence from clone RP11-460G11 on ch... 42 1.9
3gb|AF235104.5| Homo sapiens chromosome 8 clone GS1-251I7 map p21... 40 7.4
4gb|AF233390.5| Homo sapiens chromosome 8 clone GS1-251I7 map p21... 40 7.4
5gb|AC163347.4| Mus musculus BAC clone RP23-259F13 from chromosom... 40 7.4
6gb|AC107058.4| Homo sapiens BAC clone RP11-633G11 from 4, comple... 40 7.4
7gb|AC013643.10| Homo sapiens chromosome 8, clone RP11-16P20, com... 40 7.4
8gb|AC016670.7| Homo sapiens BAC clone RP11-11K6 from 2, complete... 40 7.4
9gb|AY029472.1| Homo sapiens smad-interacting protein-1 gene, par... 40 7.4
10gb|AC026461.11| Homo sapiens chromosome 16 clone RP11-249C24, co... 40 7.4
11gb|AC009951.10| Homo sapiens BAC clone RP11-107E5 from 2, comple... 40 7.4
12gb|AC136003.10| Mus musculus chromosome 15, clone RP23-191C24, c... 40 7.4
13gb|AC009155.3|AC009155 Homo sapiens chromosome 16 clone RP11-5A3... 40 7.4
14gb|AC154275.2| Mus musculus BAC clone RP24-299G8 from chromosome... 40 7.4
15dbj|AP004517.1| Lotus japonicus genomic DNA, chromosome 6, clone... 40 7.4
16gb|AC171202.1| Mus musculus BAC clone RP24-288C12 from chromosom... 40 7.4 
>emb|AL392106.4| Human DNA sequence from clone RP11-563H8 on chromosome 9 Contains a
             novel gene (FLJ20808) and a ribosomal protein L23a
             (RPL23A) pseudogene, complete sequence
          Length = 150771

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 439   tcctgggcatgtactggcaag 459
             |||||||||||||||||||||
Sbjct: 56105 tcctgggcatgtactggcaag 56125



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 328   tcctgggcatgtactggcaag 348
             |||||||||||||||||||||
Sbjct: 56105 tcctgggcatgtactggcaag 56125
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>emb|AL138709.19| Human DNA sequence from clone RP11-460G11 on chromosome 13 Contains
             part of a novel gene, complete sequence
          Length = 96874

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 265   ccattttcttgctttttccca 285
             |||||||||||||||||||||
Sbjct: 41940 ccattttcttgctttttccca 41960



 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 377   cattttcttgctttttccca 396
             ||||||||||||||||||||
Sbjct: 41941 cattttcttgctttttccca 41960
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>gb|AF235104.5| Homo sapiens chromosome 8 clone GS1-251I7 map p21-p11, complete
             sequence
          Length = 175380

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 67    cgcagctgctttccatcagc 86
             ||||||||||||||||||||
Sbjct: 96744 cgcagctgctttccatcagc 96725
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>gb|AF233390.5| Homo sapiens chromosome 8 clone GS1-251I7 map p21-p11, complete
             sequence
          Length = 95005

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 67    cgcagctgctttccatcagc 86
             ||||||||||||||||||||
Sbjct: 81211 cgcagctgctttccatcagc 81192
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>gb|AC163347.4| Mus musculus BAC clone RP23-259F13 from chromosome 18, complete
             sequence
          Length = 184836

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 313   tgctaccattgtctttcctg 332
             ||||||||||||||||||||
Sbjct: 91860 tgctaccattgtctttcctg 91841



 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 424   tgctaccattgtctttcctg 443
             ||||||||||||||||||||
Sbjct: 91860 tgctaccattgtctttcctg 91841
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>gb|AC107058.4| Homo sapiens BAC clone RP11-633G11 from 4, complete sequence
          Length = 126135

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 264   cccattttcttgctttttcc 283
             ||||||||||||||||||||
Sbjct: 74760 cccattttcttgctttttcc 74779
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>gb|AC013643.10| Homo sapiens chromosome 8, clone RP11-16P20, complete sequence
          Length = 157324

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 67    cgcagctgctttccatcagc 86
             ||||||||||||||||||||
Sbjct: 93252 cgcagctgctttccatcagc 93233
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>gb|AC016670.7| Homo sapiens BAC clone RP11-11K6 from 2, complete sequence
          Length = 148415

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 268   ttttcttgctttttcccatc 287
             ||||||||||||||||||||
Sbjct: 30698 ttttcttgctttttcccatc 30717



 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 379   ttttcttgctttttcccatc 398
             ||||||||||||||||||||
Sbjct: 30698 ttttcttgctttttcccatc 30717
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>gb|AY029472.1| Homo sapiens smad-interacting protein-1 gene, partial cds
          Length = 126080

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 363   ccacttttcgcactcatttt 382
             ||||||||||||||||||||
Sbjct: 10958 ccacttttcgcactcatttt 10939
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>gb|AC026461.11| Homo sapiens chromosome 16 clone RP11-249C24, complete sequence
          Length = 168392

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 257    tgacttgcccattttcttgctttt 280
              ||||||| ||||||||||||||||
Sbjct: 115409 tgacttgtccattttcttgctttt 115386
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>gb|AC009951.10| Homo sapiens BAC clone RP11-107E5 from 2, complete sequence
          Length = 159791

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 363   ccacttttcgcactcatttt 382
             ||||||||||||||||||||
Sbjct: 83786 ccacttttcgcactcatttt 83805
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>gb|AC136003.10| Mus musculus chromosome 15, clone RP23-191C24, complete sequence
          Length = 214651

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 292   agtgtccaataactttatca 311
             ||||||||||||||||||||
Sbjct: 18918 agtgtccaataactttatca 18899
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>gb|AC009155.3|AC009155 Homo sapiens chromosome 16 clone RP11-5A3, complete sequence
          Length = 143860

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 257    tgacttgcccattttcttgctttt 280
              ||||||| ||||||||||||||||
Sbjct: 109538 tgacttgtccattttcttgctttt 109561
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>gb|AC154275.2| Mus musculus BAC clone RP24-299G8 from chromosome 16, complete sequence
          Length = 183487

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 373   cactcattttcttgcttttt 392
             ||||||||||||||||||||
Sbjct: 13667 cactcattttcttgcttttt 13648
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>dbj|AP004517.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT14B06, TM0045,
             complete sequence
          Length = 113139

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 374   actcattttcttgctttttc 393
             ||||||||||||||||||||
Sbjct: 41770 actcattttcttgctttttc 41789
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>gb|AC171202.1| Mus musculus BAC clone RP24-288C12 from chromosome 16, complete
            sequence
          Length = 194527

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 373  cactcattttcttgcttttt 392
            ||||||||||||||||||||
Sbjct: 7278 cactcattttcttgcttttt 7297


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,028,671
Number of Sequences: 3902068
Number of extensions: 5028671
Number of successful extensions: 123576
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 123531
Number of HSP's gapped (non-prelim): 45
length of query: 545
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 522
effective length of database: 17,143,297,704
effective search space: 8948801401488
effective search space used: 8948801401488
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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