ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags26p13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT009096.1| Triticum aestivum clone wkm2c.pk005.g2:fis, full ... 728 0.0
2gb|BT009287.1| Triticum aestivum clone wlm0.pk0014.b1:fis, full ... 714 0.0
3ref|XM_483751.1| Oryza sativa (japonica cultivar-group), mRNA 351 1e-93
4dbj|AK102459.1| Oryza sativa (japonica cultivar-group) cDNA clon... 351 1e-93
5dbj|AK059351.1| Oryza sativa (japonica cultivar-group) cDNA clon... 351 1e-93
6gb|AY107597.1| Zea mays PCO071961 mRNA sequence 343 3e-91
7dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 313 3e-82
8dbj|AP003928.3| Oryza sativa (japonica cultivar-group) genomic D... 313 3e-82
9dbj|AB026731.1| Oryza sativa (japonica cultivar-group) mRNA for ... 268 1e-68
10dbj|AK071558.1| Oryza sativa (japonica cultivar-group) cDNA clon... 149 9e-33
11dbj|D85764.1| Oryza sativa (japonica cultivar-group) mRNA for cy... 149 9e-33
12dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 121 2e-24
13dbj|AP005558.3| Oryza sativa (japonica cultivar-group) genomic D... 121 2e-24
14gb|AY103967.1| Zea mays PCO066827 mRNA sequence 121 2e-24
15gb|DQ175833.1| Hordeum vulgare clone DsB33 Ds insertion site fla... 68 3e-08
16gb|DQ175852.1| Hordeum vulgare clone DsC17 Ds insertion site fla... 64 4e-07
17gb|DQ159869.1| Physcomitrella patens monodehydroascorbate reduct... 56 1e-04
18ref|XM_467387.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.025
19gb|AF480496.1| Oryza sativa clone BAC 49D11, complete sequence 48 0.025
20dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.025
21dbj|AP005844.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.025
22dbj|AP005323.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.025
23emb|AL939123.1|SCO939123 Streptomyces coelicolor A3(2) complete ... 44 0.39
24dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 44 0.39
25ref|NM_120444.2| Arabidopsis thaliana disulfide oxidoreductase/ ... 42 1.6
26gb|AY562376.1| Parma microlepis clone PM2H16 microsatellite sequ... 42 1.6
27gb|AY142000.1| Arabidopsis thaliana At5g03630/F17C15_50 mRNA, co... 42 1.6
28gb|AY057628.1| Arabidopsis thaliana AT5g03630/F17C15_50 mRNA, co... 42 1.6
29gb|AF428317.1|AF428317 Arabidopsis thaliana AT5g03630/F17C15_50 ... 42 1.6
30gb|AE004674.1| Pseudomonas aeruginosa PAO1, section 235 of 529 o... 42 1.6
31gb|AY087318.1| Arabidopsis thaliana clone 34156 mRNA, complete s... 42 1.6
32dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 42 1.6
33dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 42 1.6
34gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 42 1.6
35gb|AE017221.1| Thermus thermophilus HB27, complete genome 42 1.6
36dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 42 1.6
37emb|AL831781.8| Mouse DNA sequence from clone RP23-307O24 on chr... 42 1.6
38gb|AY714813.1| Cercopithecine herpesvirus 2, complete genome 40 6.2
39gb|AY971875.1| Lycopersicon esculentum monodehydroascorbate redu... 40 6.2
40emb|AL672043.15| Human DNA sequence from clone RP11-322N21 on ch... 40 6.2
41emb|AL451084.19| Human DNA sequence from clone RP11-357H24 on ch... 40 6.2
42emb|BX640445.1| Bordetella bronchiseptica strain RB50, complete ... 40 6.2
43emb|BX640431.1| Bordetella parapertussis strain 12822, complete ... 40 6.2
44gb|AC015855.13| Homo sapiens chromosome , clone CTC-480C19, comp... 40 6.2
45gb|CP000133.1| Rhizobium etli CFN 42, complete genome 40 6.2
46dbj|BA000031.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromo... 40 6.2
47dbj|AB096202.1| Cercopithecine herpesvirus 1 UL21, UL20, UL19, U... 40 6.2
48dbj|AB096201.1| Cercopithecine herpesvirus 1 UL21, UL20, UL19, U... 40 6.2
49gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome 40 6.2

>gb|BT009096.1| Triticum aestivum clone wkm2c.pk005.g2:fis, full insert mRNA
           sequence
          Length = 933

 Score =  728 bits (367), Expect = 0.0
 Identities = 421/437 (96%), Gaps = 4/437 (0%)
 Strand = Plus / Minus

                                                                       
Query: 21  aggaagcatcggcaggggagggacaaacacaagatttacacgcgtagatagataatagag 80
           ||||||||||||||||| |||||||||||||| |||||||||||| ||||||||   |||
Sbjct: 789 aggaagcatcggcaggg-agggacaaacacaaaatttacacgcgtcgatagata---gag 734

                                                                       
Query: 81  gaatcttcagatctttgtggcgaaatcaaggccttccttggcgagcgcctccacgtcggc 140
           ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 733 gaatcttcagatcttggtggcgaaatcaaggccttccttgccgagcgcctccacgtcgtc 674

                                                                       
Query: 141 caccggcggctgggccctggcgaccttggcgatggcctgattctcgtcggcggagccgcc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 caccggcggctgggccctggcgaccttggcgatggcctgattctcgtcggcggagccgcc 614

                                                                       
Query: 201 ctctaggaacacgccgatgaccttgccgtccttgacccagtaggtgccgaacttgggctt 260
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ctctaggaacacaccgatgaccttgccgtccttgacccagtaggtgccgaacttgggctt 554

                                                                       
Query: 261 ggccgcagctgggtcgttgtccccgaacagcaccgtctcgccaacgttgtcgccgtagaa 320
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ggccgccgctgggtcgttgtccccgaacagcaccgtctcgccaacgttgtcgccgtagaa 494

                                                                       
Query: 321 ctgccacgcgacgtcgaacgacctagagtagaagtagggcaggtagtcgtactccgccac 380
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 493 ctgccacgcgacgtcgaacgacctggagtagaagtagggcaggtagtcgtactccgccac 434

                                                                       
Query: 381 ggactcaccggactccttggccttgatagcctttactgcctgctcggccgatttccgagc 440
            ||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 433 agactcgccggactccttggccttgatcgcctttactgcctgctcggctgatttccgagc 374

                            
Query: 441 atggtcgacgtgctcca 457
           |||||||||||||||||
Sbjct: 373 atggtcgacgtgctcca 357



to top

>gb|BT009287.1| Triticum aestivum clone wlm0.pk0014.b1:fis, full insert mRNA sequence
          Length = 1486

 Score =  714 bits (360), Expect = 0.0
 Identities = 419/438 (95%), Gaps = 3/438 (0%)
 Strand = Plus / Minus

                                                                        
Query: 20   taggaagcatcggcaggggagggacaaacacaagatttacacgcgtagatagataataga 79
            ||||||||||||||||||||||||||||||||| ||| |||||||| || |||||   ||
Sbjct: 1334 taggaagcatcggcaggggagggacaaacacaacattaacacgcgtcgacagata---ga 1278

                                                                        
Query: 80   ggaatcttcagatctttgtggcgaaatcaaggccttccttggcgagcgcctccacgtcgg 139
            |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1277 ggaatcttcagatcttggtggcgaaatcaaggccttccttgccgagcgcctccacgtcgg 1218

                                                                        
Query: 140  ccaccggcggctgggccctggcgaccttggcgatggcctgattctcgtcggcggagccgc 199
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1217 ccaccggcggctgggccctggcgaccttggcgatggcctgattctcgtcggcggagccgc 1158

                                                                        
Query: 200  cctctaggaacacgccgatgaccttgccgtccttgacccagtaggtgccgaacttgggct 259
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1157 cctctaggaacacaccgatgaccttgccgtccttgacccagtaggtgccgaacttgggct 1098

                                                                        
Query: 260  tggccgcagctgggtcgttgtccccgaacagcaccgtctcgccaacgttgtcgccgtaga 319
            ||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1097 tggccaccgctgggtcgttgtccccgaacagcaccgtctcgccaacgttctcgccgtaga 1038

                                                                        
Query: 320  actgccacgcgacgtcgaacgacctagagtagaagtagggcaggtagtcgtactccgcca 379
            ||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 1037 actgccacgcgacatcgaacgacctcgaatagaagtagggcaggtagtcgtactccgcca 978

                                                                        
Query: 380  cggactcaccggactccttggccttgatagcctttactgcctgctcggccgatttccgag 439
            ||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 977  cggactcgccggactccttggccttgatcgcctttactgcctgctcggctgatttccgag 918

                              
Query: 440  catggtcgacgtgctcca 457
            ||||||||||||||||||
Sbjct: 917  catggtcgacgtgctcca 900



to top

>ref|XM_483751.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1721

 Score =  351 bits (177), Expect = 1e-93
 Identities = 291/329 (88%)
 Strand = Plus / Minus

                                                                        
Query: 127  gcctccacgtcggccaccggcggctgggccctggcgaccttggcgatggcctgattctcg 186
            ||||| |||||||||||||||||||| || |||||||||||||| ||| |||||||||| 
Sbjct: 1365 gcctcgacgtcggccaccggcggctgagctctggcgaccttggcaatgacctgattctcc 1306

                                                                        
Query: 187  tcggcggagccgccctctaggaacacgccgatgaccttgccgtccttgacccagtaggtg 246
            || || ||||||||||| ||||| ||||||| ||||||||||||||||| |||||| | |
Sbjct: 1305 tccgccgagccgccctcgaggaagacgccgacgaccttgccgtccttgatccagtacgag 1246

                                                                        
Query: 247  ccgaacttgggcttggccgcagctgggtcgttgtccccgaacagcaccgtctcgccaacg 306
            |||||||||||||||||||| |  ||||||||||| |||||||||||   |||||| |||
Sbjct: 1245 ccgaacttgggcttggccgccgtggggtcgttgtcgccgaacagcacatcctcgccgacg 1186

                                                                        
Query: 307  ttgtcgccgtagaactgccacgcgacgtcgaacgacctagagtagaagtagggcaggtag 366
            |||||||||||||||||||||| || |||||||||||  |||||||||||||||||||||
Sbjct: 1185 ttgtcgccgtagaactgccacgagaggtcgaacgaccgggagtagaagtagggcaggtag 1126

                                                                        
Query: 367  tcgtactccgccacggactcaccggactccttggccttgatagcctttactgcctgctcg 426
            |||||||||| ||| ||||| |||| |||||| |||||||| ||||| || |||||||||
Sbjct: 1125 tcgtactccggcaccgactcgccggcctccttcgccttgatcgccttcacggcctgctcg 1066

                                         
Query: 427  gccgatttccgagcatggtcgacgtgctc 455
            || ||||| ||||||||||| || |||||
Sbjct: 1065 gctgatttgcgagcatggtcaacatgctc 1037



to top

>dbj|AK102459.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033094C01, full
            insert sequence
          Length = 1720

 Score =  351 bits (177), Expect = 1e-93
 Identities = 291/329 (88%)
 Strand = Plus / Minus

                                                                        
Query: 127  gcctccacgtcggccaccggcggctgggccctggcgaccttggcgatggcctgattctcg 186
            ||||| |||||||||||||||||||| || |||||||||||||| ||| |||||||||| 
Sbjct: 1365 gcctcgacgtcggccaccggcggctgagctctggcgaccttggcaatgacctgattctcc 1306

                                                                        
Query: 187  tcggcggagccgccctctaggaacacgccgatgaccttgccgtccttgacccagtaggtg 246
            || || ||||||||||| ||||| ||||||| ||||||||||||||||| |||||| | |
Sbjct: 1305 tccgccgagccgccctcgaggaagacgccgacgaccttgccgtccttgatccagtacgag 1246

                                                                        
Query: 247  ccgaacttgggcttggccgcagctgggtcgttgtccccgaacagcaccgtctcgccaacg 306
            |||||||||||||||||||| |  ||||||||||| |||||||||||   |||||| |||
Sbjct: 1245 ccgaacttgggcttggccgccgtggggtcgttgtcgccgaacagcacatcctcgccgacg 1186

                                                                        
Query: 307  ttgtcgccgtagaactgccacgcgacgtcgaacgacctagagtagaagtagggcaggtag 366
            |||||||||||||||||||||| || |||||||||||  |||||||||||||||||||||
Sbjct: 1185 ttgtcgccgtagaactgccacgagaggtcgaacgaccgggagtagaagtagggcaggtag 1126

                                                                        
Query: 367  tcgtactccgccacggactcaccggactccttggccttgatagcctttactgcctgctcg 426
            |||||||||| ||| ||||| |||| |||||| |||||||| ||||| || |||||||||
Sbjct: 1125 tcgtactccggcaccgactcgccggcctccttcgccttgatcgccttcacggcctgctcg 1066

                                         
Query: 427  gccgatttccgagcatggtcgacgtgctc 455
            || ||||| ||||||||||| || |||||
Sbjct: 1065 gctgatttgcgagcatggtcaacatgctc 1037



to top

>dbj|AK059351.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-026-C10, full
           insert sequence
          Length = 694

 Score =  351 bits (177), Expect = 1e-93
 Identities = 291/329 (88%)
 Strand = Plus / Minus

                                                                       
Query: 127 gcctccacgtcggccaccggcggctgggccctggcgaccttggcgatggcctgattctcg 186
           ||||| |||||||||||||||||||| || |||||||||||||| ||| |||||||||| 
Sbjct: 338 gcctcgacgtcggccaccggcggctgagctctggcgaccttggcaatgacctgattctcc 279

                                                                       
Query: 187 tcggcggagccgccctctaggaacacgccgatgaccttgccgtccttgacccagtaggtg 246
           || || ||||||||||| ||||| ||||||| ||||||||||||||||| |||||| | |
Sbjct: 278 tccgccgagccgccctcgaggaagacgccgacgaccttgccgtccttgatccagtacgag 219

                                                                       
Query: 247 ccgaacttgggcttggccgcagctgggtcgttgtccccgaacagcaccgtctcgccaacg 306
           |||||||||||||||||||| |  ||||||||||| |||||||||||   |||||| |||
Sbjct: 218 ccgaacttgggcttggccgccgtggggtcgttgtcgccgaacagcacatcctcgccgacg 159

                                                                       
Query: 307 ttgtcgccgtagaactgccacgcgacgtcgaacgacctagagtagaagtagggcaggtag 366
           |||||||||||||||||||||| || |||||||||||  |||||||||||||||||||||
Sbjct: 158 ttgtcgccgtagaactgccacgagaggtcgaacgaccgggagtagaagtagggcaggtag 99

                                                                       
Query: 367 tcgtactccgccacggactcaccggactccttggccttgatagcctttactgcctgctcg 426
           |||||||||| ||| ||||| |||| |||||| |||||||| ||||| || |||||||||
Sbjct: 98  tcgtactccggcaccgactcgccggcctccttcgccttgatcgccttcacggcctgctcg 39

                                        
Query: 427 gccgatttccgagcatggtcgacgtgctc 455
           || ||||| ||||||||||| || |||||
Sbjct: 38  gctgatttgcgagcatggtcaacatgctc 10



to top

>gb|AY107597.1| Zea mays PCO071961 mRNA sequence
          Length = 1745

 Score =  343 bits (173), Expect = 3e-91
 Identities = 295/333 (88%), Gaps = 2/333 (0%)
 Strand = Plus / Minus

                                                                        
Query: 124  agcgcctccacgtcggccaccggcggctgggccctggcgaccttggcgatggcctgattc 183
            |||||||  |||||||||||||||||||| |||||||||||| ||||||||||||| |||
Sbjct: 1478 agcgcctggacgtcggccaccggcggctgcgccctggcgaccctggcgatggcctggttc 1419

                                                                        
Query: 184  tcgtcggcggagccgccctctaggaacacgccgatgaccttgccgtccttgacccagtag 243
            || ||||| || |||||||| || |||||||||| ||||||||||||||| |||||||||
Sbjct: 1418 tcctcggccgacccgccctcgagaaacacgccgacgaccttgccgtccttcacccagtag 1359

                                                                        
Query: 244  gtgccgaacttgggcttggccgcagctgggtcgttgtccccgaacagcaccgtc-tcgcc 302
             |||||||||||||||||||||  || ||||||||||| |||||||||| |||| |||||
Sbjct: 1358 ctgccgaacttgggcttggccgaggccgggtcgttgtcgccgaacagca-cgtcgtcgcc 1300

                                                                        
Query: 303  aacgttgtcgccgtagaactgccacgcgacgtcgaacgacctagagtagaagtagggcag 362
             |||||||||||||||||||||||||| | |||||||||||  |||||||||||||||||
Sbjct: 1299 gacgttgtcgccgtagaactgccacgccaagtcgaacgaccgggagtagaagtagggcag 1240

                                                                        
Query: 363  gtagtcgtactccgccacggactcaccggactccttggccttgatagcctttactgcctg 422
            ||||||||| || ||||| || || |||||||||||||||||||| ||| | || |||||
Sbjct: 1239 gtagtcgtattcggccaccgattcgccggactccttggccttgattgccctcacggcctg 1180

                                             
Query: 423  ctcggccgatttccgagcatggtcgacgtgctc 455
            |||||| || ||||| || ||||| ||||||||
Sbjct: 1179 ctcggcggacttccgggcgtggtccacgtgctc 1147



to top

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  313 bits (158), Expect = 3e-82
 Identities = 254/286 (88%)
 Strand = Plus / Minus

                                                                            
Query: 127      gcctccacgtcggccaccggcggctgggccctggcgaccttggcgatggcctgattctcg 186
                ||||| |||||||||||||||||||| || |||||||||||||| ||| |||||||||| 
Sbjct: 27895523 gcctcgacgtcggccaccggcggctgagctctggcgaccttggcaatgacctgattctcc 27895464

                                                                            
Query: 187      tcggcggagccgccctctaggaacacgccgatgaccttgccgtccttgacccagtaggtg 246
                || || ||||||||||| ||||| ||||||| ||||||||||||||||| |||||| | |
Sbjct: 27895463 tccgccgagccgccctcgaggaagacgccgacgaccttgccgtccttgatccagtacgag 27895404

                                                                            
Query: 247      ccgaacttgggcttggccgcagctgggtcgttgtccccgaacagcaccgtctcgccaacg 306
                |||||||||||||||||||| |  ||||||||||| |||||||||||   |||||| |||
Sbjct: 27895403 ccgaacttgggcttggccgccgtggggtcgttgtcgccgaacagcacatcctcgccgacg 27895344

                                                                            
Query: 307      ttgtcgccgtagaactgccacgcgacgtcgaacgacctagagtagaagtagggcaggtag 366
                |||||||||||||||||||||| || |||||||||||  |||||||||||||||||||||
Sbjct: 27895343 ttgtcgccgtagaactgccacgagaggtcgaacgaccgggagtagaagtagggcaggtag 27895284

                                                              
Query: 367      tcgtactccgccacggactcaccggactccttggccttgatagcct 412
                |||||||||| ||| ||||| |||| |||||| |||||||| ||||
Sbjct: 27895283 tcgtactccggcaccgactcgccggcctccttcgccttgatcgcct 27895238



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                      
Query: 418      gcctgctcggccgatttccgagcatggtcgacgtgctc 455
                ||||||||||| ||||| ||||||||||| || |||||
Sbjct: 27895126 gcctgctcggctgatttgcgagcatggtcaacatgctc 27895089



to top

>dbj|AP003928.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1150_A11
          Length = 142010

 Score =  313 bits (158), Expect = 3e-82
 Identities = 254/286 (88%)
 Strand = Plus / Minus

                                                                          
Query: 127    gcctccacgtcggccaccggcggctgggccctggcgaccttggcgatggcctgattctcg 186
              ||||| |||||||||||||||||||| || |||||||||||||| ||| |||||||||| 
Sbjct: 103601 gcctcgacgtcggccaccggcggctgagctctggcgaccttggcaatgacctgattctcc 103542

                                                                          
Query: 187    tcggcggagccgccctctaggaacacgccgatgaccttgccgtccttgacccagtaggtg 246
              || || ||||||||||| ||||| ||||||| ||||||||||||||||| |||||| | |
Sbjct: 103541 tccgccgagccgccctcgaggaagacgccgacgaccttgccgtccttgatccagtacgag 103482

                                                                          
Query: 247    ccgaacttgggcttggccgcagctgggtcgttgtccccgaacagcaccgtctcgccaacg 306
              |||||||||||||||||||| |  ||||||||||| |||||||||||   |||||| |||
Sbjct: 103481 ccgaacttgggcttggccgccgtggggtcgttgtcgccgaacagcacatcctcgccgacg 103422

                                                                          
Query: 307    ttgtcgccgtagaactgccacgcgacgtcgaacgacctagagtagaagtagggcaggtag 366
              |||||||||||||||||||||| || |||||||||||  |||||||||||||||||||||
Sbjct: 103421 ttgtcgccgtagaactgccacgagaggtcgaacgaccgggagtagaagtagggcaggtag 103362

                                                            
Query: 367    tcgtactccgccacggactcaccggactccttggccttgatagcct 412
              |||||||||| ||| ||||| |||| |||||| |||||||| ||||
Sbjct: 103361 tcgtactccggcaccgactcgccggcctccttcgccttgatcgcct 103316



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                    
Query: 418    gcctgctcggccgatttccgagcatggtcgacgtgctc 455
              ||||||||||| ||||| ||||||||||| || |||||
Sbjct: 103204 gcctgctcggctgatttgcgagcatggtcaacatgctc 103167



to top

>dbj|AB026731.1| Oryza sativa (japonica cultivar-group) mRNA for monodehydroascorbate
            reductase, partial cds
          Length = 1339

 Score =  268 bits (135), Expect = 1e-68
 Identities = 222/251 (88%)
 Strand = Plus / Minus

                                                                        
Query: 205  aggaacacgccgatgaccttgccgtccttgacccagtaggtgccgaacttgggcttggcc 264
            ||||| ||||||| ||||||||||||||||| |||||| | |||||||||||||||||||
Sbjct: 1335 aggaagacgccgacgaccttgccgtccttgatccagtacgagccgaacttgggcttggcc 1276

                                                                        
Query: 265  gcagctgggtcgttgtccccgaacagcaccgtctcgccaacgttgtcgccgtagaactgc 324
            || |  ||||||||||| |||||||||||   |||||| |||||||||||||||||||||
Sbjct: 1275 gccgtggggtcgttgtcgccgaacagcacatcctcgccgacgttgtcgccgtagaactgc 1216

                                                                        
Query: 325  cacgcgacgtcgaacgacctagagtagaagtagggcaggtagtcgtactccgccacggac 384
            |||| || |||||||||||  ||||||||||||||||||||||||||||||| ||| |||
Sbjct: 1215 cacgagaggtcgaacgaccgggagtagaagtagggcaggtagtcgtactccggcaccgac 1156

                                                                        
Query: 385  tcaccggactccttggccttgatagcctttactgcctgctcggccgatttccgagcatgg 444
            || |||| |||||| |||||||| ||||| || ||||||||||| ||||| |||||||||
Sbjct: 1155 tcgccggcctccttcgccttgatcgccttcacggcctgctcggctgatttgcgagcatgg 1096

                       
Query: 445  tcgacgtgctc 455
            || || |||||
Sbjct: 1095 tcaacatgctc 1085



to top

>dbj|AK071558.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023100J06, full
            insert sequence
          Length = 1668

 Score =  149 bits (75), Expect = 9e-33
 Identities = 189/227 (83%)
 Strand = Plus / Minus

                                                                        
Query: 220  accttgccgtccttgacccagtaggtgccgaacttgggcttggccgcagctgggtcgttg 279
            |||||||||||||||| ||||||||  ||||||||||||||||| |  |  |||||  ||
Sbjct: 1394 accttgccgtccttgatccagtaggacccgaacttgggcttggcagaggtcgggtcactg 1335

                                                                        
Query: 280  tccccgaacagcaccgtctcgccaacgttgtcgccgtagaactgccacgcgacgtcgaac 339
            || |||||||| |  || ||||||||||||||||||||||| |||||  | | |||||| 
Sbjct: 1334 tctccgaacaggatggtgtcgccaacgttgtcgccgtagaattgccatcccaggtcgaat 1275

                                                                        
Query: 340  gacctagagtagaagtagggcaggtagtcgtactccgccacggactcaccggactccttg 399
            ||||  ||||||||||| ||||| ||||| |||||| | |||||||| |||||||| || 
Sbjct: 1274 gaccgggagtagaagtatggcagatagtcatactccacaacggactcgccggactctttt 1215

                                                           
Query: 400  gccttgatagcctttactgcctgctcggccgatttccgagcatggtc 446
             ||||||| |||||||| |||||||| || || |||| |||||||||
Sbjct: 1214 cccttgattgcctttacagcctgctctgcagacttcctagcatggtc 1168



to top

>dbj|D85764.1| Oryza sativa (japonica cultivar-group) mRNA for cytosolic
            monodehydroascorbate reductase, complete cds
          Length = 1570

 Score =  149 bits (75), Expect = 9e-33
 Identities = 189/227 (83%)
 Strand = Plus / Minus

                                                                        
Query: 220  accttgccgtccttgacccagtaggtgccgaacttgggcttggccgcagctgggtcgttg 279
            |||||||||||||||| ||||||||  ||||||||||||||||| |  |  |||||  ||
Sbjct: 1272 accttgccgtccttgatccagtaggacccgaacttgggcttggcagaggtcgggtcactg 1213

                                                                        
Query: 280  tccccgaacagcaccgtctcgccaacgttgtcgccgtagaactgccacgcgacgtcgaac 339
            || |||||||| |  || ||||||||||||||||||||||| |||||  | | |||||| 
Sbjct: 1212 tctccgaacaggatggtgtcgccaacgttgtcgccgtagaattgccatcccaggtcgaat 1153

                                                                        
Query: 340  gacctagagtagaagtagggcaggtagtcgtactccgccacggactcaccggactccttg 399
            ||||  ||||||||||| ||||| ||||| |||||| | |||||||| |||||||| || 
Sbjct: 1152 gaccgggagtagaagtatggcagatagtcatactccacaacggactcgccggactctttt 1093

                                                           
Query: 400  gccttgatagcctttactgcctgctcggccgatttccgagcatggtc 446
             ||||||| |||||||| |||||||| || || |||| |||||||||
Sbjct: 1092 cccttgattgcctttacagcctgctctgcagacttcctagcatggtc 1046



to top

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  121 bits (61), Expect = 2e-24
 Identities = 160/193 (82%)
 Strand = Plus / Minus

                                                                            
Query: 220      accttgccgtccttgacccagtaggtgccgaacttgggcttggccgcagctgggtcgttg 279
                |||||||||||||||| ||||||||  ||||||||||||||||| |  |  |||||  ||
Sbjct: 22346963 accttgccgtccttgatccagtaggacccgaacttgggcttggcagaggtcgggtcactg 22346904

                                                                            
Query: 280      tccccgaacagcaccgtctcgccaacgttgtcgccgtagaactgccacgcgacgtcgaac 339
                || |||||||| |  || ||||||||||||||||||||||| |||||  | | |||||| 
Sbjct: 22346903 tctccgaacaggatggtgtcgccaacgttgtcgccgtagaattgccatcccaggtcgaat 22346844

                                                                            
Query: 340      gacctagagtagaagtagggcaggtagtcgtactccgccacggactcaccggactccttg 399
                ||||  ||||||||||| ||||| ||||| |||||| | |||||||| |||||||| || 
Sbjct: 22346843 gaccgggagtagaagtatggcagatagtcatactccacaacggactcgccggactctttt 22346784

                             
Query: 400      gccttgatagcct 412
                 ||||||| ||||
Sbjct: 22346783 cccttgattgcct 22346771



to top

>dbj|AP005558.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1155_H10
          Length = 140475

 Score =  121 bits (61), Expect = 2e-24
 Identities = 160/193 (82%)
 Strand = Plus / Minus

                                                                          
Query: 220    accttgccgtccttgacccagtaggtgccgaacttgggcttggccgcagctgggtcgttg 279
              |||||||||||||||| ||||||||  ||||||||||||||||| |  |  |||||  ||
Sbjct: 108971 accttgccgtccttgatccagtaggacccgaacttgggcttggcagaggtcgggtcactg 108912

                                                                          
Query: 280    tccccgaacagcaccgtctcgccaacgttgtcgccgtagaactgccacgcgacgtcgaac 339
              || |||||||| |  || ||||||||||||||||||||||| |||||  | | |||||| 
Sbjct: 108911 tctccgaacaggatggtgtcgccaacgttgtcgccgtagaattgccatcccaggtcgaat 108852

                                                                          
Query: 340    gacctagagtagaagtagggcaggtagtcgtactccgccacggactcaccggactccttg 399
              ||||  ||||||||||| ||||| ||||| |||||| | |||||||| |||||||| || 
Sbjct: 108851 gaccgggagtagaagtatggcagatagtcatactccacaacggactcgccggactctttt 108792

                           
Query: 400    gccttgatagcct 412
               ||||||| ||||
Sbjct: 108791 cccttgattgcct 108779



to top

>gb|AY103967.1| Zea mays PCO066827 mRNA sequence
          Length = 1675

 Score =  121 bits (61), Expect = 2e-24
 Identities = 231/285 (81%), Gaps = 2/285 (0%)
 Strand = Plus / Minus

                                                                        
Query: 142  accggcggctgggccctggcgaccttggcgatggcctgattctcgtcggcggagccgccc 201
            |||||||||||||   | || |||||||| ||| |||  |||||||| |  || ||||||
Sbjct: 1386 accggcggctgggttttcgccaccttggcaatgaccttgttctcgtccggtgacccgccc 1327

                                                                        
Query: 202  tctaggaacacgccgatgaccttgccgtccttgacccagtaggtgccgaacttgggcttg 261
            || |||||  |||| | ||||||||||||||| | |||||| | ||||||||||||||||
Sbjct: 1326 tccaggaaggcgcccaagaccttgccgtccttaatccagtacgagccgaacttgggcttg 1267

                                                                        
Query: 262  gccgcagctggg-tcgttgtccccgaacagcaccgtctcgccaacgttgtcgccgtagaa 320
             | | || |||| ||  |||| || ||||| |  || ||||| |||||||||||||||||
Sbjct: 1266 -ctggaggtggggtcactgtcgccaaacaggatggtttcgcccacgttgtcgccgtagaa 1208

                                                                        
Query: 321  ctgccacgcgacgtcgaacgacctagagtagaagtagggcaggtagtcgtactccgccac 380
             |||||||| | |||||| || |  ||||||||||| ||||||||||| |||||||  ||
Sbjct: 1207 ttgccacgccaggtcgaatgatcgggagtagaagtatggcaggtagtcatactccggaac 1148

                                                         
Query: 381  ggactcaccggactccttggccttgatagcctttactgcctgctc 425
             |  ||||||||||| ||| ||||||| |||||||| ||||||||
Sbjct: 1147 tggttcaccggactctttgcccttgatcgcctttacagcctgctc 1103



to top

>gb|DQ175833.1| Hordeum vulgare clone DsB33 Ds insertion site flanking region
           genomic sequence
          Length = 887

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 82/98 (83%)
 Strand = Plus / Minus

                                                                       
Query: 145 ggcggctgggccctggcgaccttggcgatggcctgattctcgtcggcggagccgccctct 204
           ||||||||| |||| |||| ||||||||||||    |||||||| |  || |||||||| 
Sbjct: 654 ggcggctggtccctcgcgagcttggcgatggcgccgttctcgtccggcgacccgccctcc 595

                                                 
Query: 205 aggaacacgccgatgaccttgccgtccttgacccagta 242
           ||||||||||| | |  |||||||||||||||||||||
Sbjct: 594 aggaacacgcccacgcacttgccgtccttgacccagta 557



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 32/32 (100%)
 Strand = Plus / Minus

                                           
Query: 346 gagtagaagtagggcaggtagtcgtactccgc 377
           ||||||||||||||||||||||||||||||||
Sbjct: 32  gagtagaagtagggcaggtagtcgtactccgc 1



to top

>gb|DQ175852.1| Hordeum vulgare clone DsC17 Ds insertion site flanking region
           genomic sequence
          Length = 538

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 32/32 (100%)
 Strand = Plus / Minus

                                           
Query: 346 gagtagaagtagggcaggtagtcgtactccgc 377
           ||||||||||||||||||||||||||||||||
Sbjct: 74  gagtagaagtagggcaggtagtcgtactccgc 43



to top

>gb|DQ159869.1| Physcomitrella patens monodehydroascorbate reductase I (Mdhar1) gene,
            promoter region and complete cds
          Length = 6026

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                    
Query: 289  agcaccgtctcgccaacgttgtcgccgtagaactgccacg 328
            ||||| |||||||| || ||||||||||||||||||||||
Sbjct: 5562 agcacagtctcgcccacattgtcgccgtagaactgccacg 5523



to top

>ref|XM_467387.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1440

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 305  cgttgtcgccgtagaactgccacg 328
            ||||||||||||||||||||||||
Sbjct: 1084 cgttgtcgccgtagaactgccacg 1061



to top

>gb|AF480496.1| Oryza sativa clone BAC 49D11, complete sequence
          Length = 158050

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 305    cgttgtcgccgtagaactgccacg 328
              ||||||||||||||||||||||||
Sbjct: 116968 cgttgtcgccgtagaactgccacg 116945



to top

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                        
Query: 305      cgttgtcgccgtagaactgccacg 328
                ||||||||||||||||||||||||
Sbjct: 29245663 cgttgtcgccgtagaactgccacg 29245686



to top

>dbj|AP005844.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0060O16
          Length = 164373

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 305   cgttgtcgccgtagaactgccacg 328
             ||||||||||||||||||||||||
Sbjct: 43008 cgttgtcgccgtagaactgccacg 43031



to top

>dbj|AP005323.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0680A05
          Length = 168092

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 305    cgttgtcgccgtagaactgccacg 328
              ||||||||||||||||||||||||
Sbjct: 135631 cgttgtcgccgtagaactgccacg 135654



to top

>emb|AL939123.1|SCO939123 Streptomyces coelicolor A3(2) complete genome; segment 20/29
          Length = 300100

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 116    ccttggcgagcgcctccacgtcggcc 141
              ||||||||| ||||||||||||||||
Sbjct: 292100 ccttggcgaccgcctccacgtcggcc 292075



to top

>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 210     cacgccgatgaccttgccgtccttga 235
               ||||||| ||||||||||||||||||
Sbjct: 2805150 cacgccggtgaccttgccgtccttga 2805125



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 218     tgaccttgccgtccttgacc 237
               ||||||||||||||||||||
Sbjct: 4337179 tgaccttgccgtccttgacc 4337198



to top

>ref|NM_120444.2| Arabidopsis thaliana disulfide oxidoreductase/ oxidoreductase
            AT5G03630 mRNA, complete cds
          Length = 1581

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                 
Query: 400  gccttgatagcctttactgcctgctcggccgatttccgagcatggtcgacgtg 452
            |||||||| |||||||| || || || || ||||| ||||||||||| |||||
Sbjct: 1056 gccttgattgcctttacggcttgttcagcggatttgcgagcatggtcaacgtg 1004



to top

>gb|AY562376.1| Parma microlepis clone PM2H16 microsatellite sequence
          Length = 537

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 33  caggggagggacaaacacaag 53
           |||||||||||||||||||||
Sbjct: 194 caggggagggacaaacacaag 214



to top

>gb|AY142000.1| Arabidopsis thaliana At5g03630/F17C15_50 mRNA, complete cds
          Length = 1308

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                
Query: 400 gccttgatagcctttactgcctgctcggccgatttccgagcatggtcgacgtg 452
           |||||||| |||||||| || || || || ||||| ||||||||||| |||||
Sbjct: 995 gccttgattgcctttacggcttgttcagcggatttgcgagcatggtcaacgtg 943



to top

>gb|AY057628.1| Arabidopsis thaliana AT5g03630/F17C15_50 mRNA, complete cds
          Length = 1577

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                 
Query: 400  gccttgatagcctttactgcctgctcggccgatttccgagcatggtcgacgtg 452
            |||||||| |||||||| || || || || ||||| ||||||||||| |||||
Sbjct: 1047 gccttgattgcctttacggcttgttcagcggatttgcgagcatggtcaacgtg 995



to top

>gb|AF428317.1|AF428317 Arabidopsis thaliana AT5g03630/F17C15_50 mRNA, complete cds
          Length = 1526

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                 
Query: 400  gccttgatagcctttactgcctgctcggccgatttccgagcatggtcgacgtg 452
            |||||||| |||||||| || || || || ||||| ||||||||||| |||||
Sbjct: 1044 gccttgattgcctttacggcttgttcagcggatttgcgagcatggtcaacgtg 992



to top

>gb|AE004674.1| Pseudomonas aeruginosa PAO1, section 235 of 529 of the complete
            genome
          Length = 11021

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 137  cggccaccggcggctgggccctggcgacc 165
            |||||||||||||||||||| || |||||
Sbjct: 9935 cggccaccggcggctgggccatgccgacc 9963



to top

>gb|AY087318.1| Arabidopsis thaliana clone 34156 mRNA, complete sequence
          Length = 1538

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                 
Query: 400  gccttgatagcctttactgcctgctcggccgatttccgagcatggtcgacgtg 452
            |||||||| |||||||| || || || || ||||| ||||||||||| |||||
Sbjct: 1057 gccttgattgcctttacggcttgttcagcggatttgcgagcatggtcaacgtg 1005



to top

>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 150    ctgggccctggcgaccttggcgatggcct 178
              ||||||| |||| ||||||||||||||||
Sbjct: 792531 ctgggccttggccaccttggcgatggcct 792559



to top

>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 213     gccgatgaccttgccgtcctt 233
               |||||||||||||||||||||
Sbjct: 2512009 gccgatgaccttgccgtcctt 2512029



to top

>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 235    acccagtaggtgccgaacttg 255
              |||||||||||||||||||||
Sbjct: 464124 acccagtaggtgccgaacttg 464144



to top

>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 150    ctgggccctggcgaccttggcgatggcct 178
              ||||||| |||| ||||||||||||||||
Sbjct: 463611 ctgggccttggccaccttggcgatggcct 463639



to top

>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 210    cacgccgatgaccttgccgtc 230
              |||||||||||||||||||||
Sbjct: 532004 cacgccgatgaccttgccgtc 532024



to top

>emb|AL831781.8| Mouse DNA sequence from clone RP23-307O24 on chromosome 2, complete
              sequence
          Length = 140953

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 31     ggcaggggagggacaaacaca 51
              |||||||||||||||||||||
Sbjct: 127280 ggcaggggagggacaaacaca 127260



to top

>gb|AY714813.1| Cercopithecine herpesvirus 2, complete genome
          Length = 150715

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 130    tccacgtcggccaccggcgg 149
              ||||||||||||||||||||
Sbjct: 134504 tccacgtcggccaccggcgg 134485



to top

>gb|AY971875.1| Lycopersicon esculentum monodehydroascorbate reductase (MDHAR) mRNA,
            partial cds
          Length = 1419

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 430  gatttccgagcatggtcgacgtgctcca 457
            ||||| ||||||||||| ||||||||||
Sbjct: 1342 gatttacgagcatggtcaacgtgctcca 1315



to top

>emb|AL672043.15| Human DNA sequence from clone RP11-322N21 on chromosome 1 Contains a
             novel gene, the gene for  tetraspan 1 (TSPAN-1), gene
             FLJ20277 (FLJ31624) and the gene for a novel protein
             (FLJ25163), complete sequence
          Length = 87234

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 150   ctgggccctggcgaccttgg 169
             ||||||||||||||||||||
Sbjct: 22909 ctgggccctggcgaccttgg 22928



to top

>emb|AL451084.19| Human DNA sequence from clone RP11-357H24 on chromosome 10 Contains the
              3' end of the TCF7L2 gene for transcription factor 7-like 2
              (T-cell specific, HMG-box), complete sequence
          Length = 183815

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 400    gccttgatagcctttactgc 419
              ||||||||||||||||||||
Sbjct: 111250 gccttgatagcctttactgc 111231



to top

>emb|BX640445.1| Bordetella bronchiseptica strain RB50, complete genome; segment 9/16
          Length = 348706

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 141    caccggcggctgggccctgg 160
              ||||||||||||||||||||
Sbjct: 268675 caccggcggctgggccctgg 268694



to top

>emb|BX640431.1| Bordetella parapertussis strain 12822, complete genome; segment 9/14
          Length = 347894

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 141    caccggcggctgggccctgg 160
              ||||||||||||||||||||
Sbjct: 340349 caccggcggctgggccctgg 340368



to top

>gb|AC015855.13| Homo sapiens chromosome , clone CTC-480C19, complete sequence
          Length = 96963

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 149   gctgggccctggcgaccttg 168
             ||||||||||||||||||||
Sbjct: 84619 gctgggccctggcgaccttg 84600



to top

>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 218     tgaccttgccgtccttgacc 237
               ||||||||||||||||||||
Sbjct: 3687086 tgaccttgccgtccttgacc 3687067



to top

>dbj|BA000031.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromosome 1, complete sequence
          Length = 3288558

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 410    cctttactgcctgctcggcc 429
              ||||||||||||||||||||
Sbjct: 285008 cctttactgcctgctcggcc 284989



to top

>dbj|AB096202.1| Cercopithecine herpesvirus 1 UL21, UL20, UL19, UL18, UL15 genes for
            tegument protein, integral membrane protein, major capsid
            protein, capsid protein, DNA packaging protein, partial
            and complete cds, genotypes: BVlt
          Length = 7985

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 120  ggcgagcgcctccacgtcggccac 143
            ||||||||||||||||| ||||||
Sbjct: 4291 ggcgagcgcctccacgtgggccac 4268



to top

>dbj|AB096201.1| Cercopithecine herpesvirus 1 UL21, UL20, UL19, UL18, UL15 genes for
            tegument protein, integral membrane protein, major capsid
            protein, capsid protein, DNA packaging protein, partial
            and complete cds, genotypes: BVpt
          Length = 7910

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 120  ggcgagcgcctccacgtcggccac 143
            ||||||||||||||||| ||||||
Sbjct: 4299 ggcgagcgcctccacgtgggccac 4276



to top

>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome
          Length = 2256640

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 215    cgatgaccttgccgtccttg 234
              ||||||||||||||||||||
Sbjct: 420412 cgatgaccttgccgtccttg 420431


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,443,509
Number of Sequences: 3902068
Number of extensions: 2443509
Number of successful extensions: 52994
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52225
Number of HSP's gapped (non-prelim): 759
length of query: 457
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 435
effective length of database: 17,147,199,772
effective search space: 7459031900820
effective search space used: 7459031900820
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top