ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags26p10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y277_MYCGE (Q49409) Hypothetical protein MG277 30 4.5
2COA1_POVBK (P03088) Coat protein VP1 30 4.5
3COA1_POVBA (P14996) Coat protein VP1 30 4.5
4PPME1_CRYNE (Q5KBD8) Protein phosphatase methylesterase 1 (EC 3.... 29 5.9
5COA1_SV40 (P03087) Coat protein VP1 29 5.9
6HEMA_IADNY (P04660) Hemagglutinin precursor [Contains: Hemagglut... 29 7.7
7MRGX1_HUMAN (Q96LB2) Mas-related G-protein coupled receptor memb... 29 7.7

>Y277_MYCGE (Q49409) Hypothetical protein MG277|
          Length = 970

 Score = 29.6 bits (65), Expect = 4.5
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -1

Query: 486 DDSDLPAQDLQGSCQDADVSGHGDAVKLDDDGTSASATALLIFWK 352
           +  +L + D       A V G+G   K + +GTS+S    L+ WK
Sbjct: 237 NSKNLSSSDYNTGNGQASVEGNGKFFKQNANGTSSSGNKTLVLWK 281



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>COA1_POVBK (P03088) Coat protein VP1|
          Length = 362

 Score = 29.6 bits (65), Expect = 4.5
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +1

Query: 181 NVTNTATTGMIDTQILGPFC 240
           +VTNTATT ++D Q +GP C
Sbjct: 236 HVTNTATTVLLDEQGVGPLC 255



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>COA1_POVBA (P14996) Coat protein VP1|
          Length = 362

 Score = 29.6 bits (65), Expect = 4.5
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +1

Query: 181 NVTNTATTGMIDTQILGPFC 240
           +VTNTATT ++D Q +GP C
Sbjct: 236 HVTNTATTVLLDEQGVGPLC 255



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>PPME1_CRYNE (Q5KBD8) Protein phosphatase methylesterase 1 (EC 3.1.1.-) (PME-1)|
          Length = 422

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = -1

Query: 483 DSDLPAQDLQGSCQDADVSGHGDAVKLDDDGTSASATALLIFWKPDTDVIVKPP 322
           D +L    +QG  Q   +S  G    L +D  +  A  L+ FW  +T V+V PP
Sbjct: 349 DRELMVGQMQGKFQLEVMSDVGHY--LHEDNPAGLAATLITFWHRNTRVLVLPP 400



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>COA1_SV40 (P03087) Coat protein VP1|
          Length = 364

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +1

Query: 181 NVTNTATTGMIDTQILGPFC 240
           ++TNTATT ++D Q +GP C
Sbjct: 238 HITNTATTVLLDEQGVGPLC 257



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>HEMA_IADNY (P04660) Hemagglutinin precursor [Contains: Hemagglutinin HA1|
           chain] (Fragment)
          Length = 100

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 175 QPNVTNTATTGMIDTQILGPFCPI*GYTTTNLGKIRDGWWDL 300
           + NVT T++  +++T+  G FC I G    +LG      W L
Sbjct: 37  ESNVTVTSSVELVETEHTGSFCSINGKQPISLGDCSFAGWIL 78



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>MRGX1_HUMAN (Q96LB2) Mas-related G-protein coupled receptor member X1 (Sensory|
           neuron-specific G-protein coupled receptor 4)
          Length = 322

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
 Frame = -3

Query: 301 LDPTTHLLSYLDSSLCNPISGKRDRV--SEYLSYLWWQCLLRLVGCTSRAILLLLV 140
           +DPT   +S LD+ L  PI+G  + +   + LS     C++ LVG T  A++L L+
Sbjct: 1   MDPT---ISTLDTEL-TPINGTEETLCYKQTLSLTVLTCIVSLVGLTGNAVVLWLL 52


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,885,165
Number of Sequences: 219361
Number of extensions: 1267654
Number of successful extensions: 3386
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3386
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3420806017
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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